Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0003502

Physical Location & Seq

Genomic Coordinates Forward (+)

2466363 .. 2466939

Gene Structure 577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1027000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGCGTTCGTTGAAATTCACCAACTGGGTCTCTCTCTTCTTTCTGGGTTTTGCTTTCTTCCGCTACTTTTACACTTCCCAATTCTCTTCTCCTCGAATTATGGCTGAAGAAAGTTCCAAATCTGTATACGAATTCACTGTCAAGGATGTTCATGGTAACGACGTAAATCTGAGCGAATACAGTGGCAAGGTGGTTGTTATGGACAAGAGCCAGGAAACAATGAGGAGATTGAAAGCTGAATTTCCACTCTTTGACAAGATTGTGGTGAATGGGAAGAACGAGGTACCCCTTTACAAATTCTTAAAGGGGCAGAAAGGTGGGATATTTGGGAGTGGCATCCAATGGAACTTTAATAAGTTTTTGGGTAACAAAGAAGGAAAGGTTGTGGAGAGATATGCTCCTGTGACATTACCTATTAAAATAGAGAAAGACATCCAGAATTTGTTCGAATCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

153

Amino Acids

17.58

Weight (kDa)

9.47

Isoelectric Point (pI)

30.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31570 AT2G43350 AT2G43350
fragaria_vesca	FvH4_6g25700
malus_domestica	MD04G1034400.v1.1 MD14G1027000.v1.1
prunus_persica	Prupe.1G186500_v2.0.a1 Prupe.1G186500_v2.0.a1
pyrus_communis	pycom14g02570
rosa_chinensis	RchiOBHm_Chr4g0400261 RchiOBHm_Chr4g0408201
rosa_laevigata	RLG00000008663 RLG00000015280
rosa_multiflora	Rmu_sc0001793.1_g000052 Rmu_sc0005466.1_g000001 Rmu_sc0007120.1_g000003
rosa_roxburghii	Rroxscaffold_1G00024180 Rroxscaffold_1G00051140 Rroxscaffold_4G00316840 Rroxscaffold_5G00352710 Rroxscaffold_5G00361080
rosa_rugosa	Rorug04G0084100 Rorug04G0184800
rosa_samantha	Rh1CG015500 Rh2AG152400 Rh2BG157900 Rh3BG160500 Rh4AG149100 Rh4BG145700 Rh4CG156100 Rh4DG142100 Rh5BG054800
rosa_wichuraiana	Rw1G001130 Rw3G028070 Rw4G012170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	283
AccB1I	GGYRCC	1 cut(s)	283
AccI	GTMKAC	1 cut(s)	126
AciI	CCGC	1 cut(s)	61
AcsI	RAATTY	5 cut(s)	14, 131, 239, 296, 439
AcuI	CTGAAG	1 cut(s)	126
AfaI	GTAC	1 cut(s)	285
AgsI	TTSAA	2 cut(s)	13, 232
AjnI	CCWGG	1 cut(s)	210
AluBI	AGCT	1 cut(s)	236
AluI	AGCT	1 cut(s)	236
Alw26I	GTCTC	1 cut(s)	34
ApoI	RAATTY	5 cut(s)	14, 131, 239, 296, 439
ArsI	GACNNNNNNTTYG	2 cut(s)	123, 155
Asp700I	GAANNNNTTC	1 cut(s)	443
Asp718I	GGTACC	1 cut(s)	283
AsuHPI	GGTGA	2 cut(s)	10, 277
AsuII	TTCGAA	1 cut(s)	447
BanI	GGYRCC	1 cut(s)	283
BciT130I	CCWGG	1 cut(s)	212
BcoDI	GTCTC	1 cut(s)	34
Bme1390I	CCNGG	1 cut(s)	212
BmiI	GGNNCC	1 cut(s)	285
BmrFI	CCNGG	1 cut(s)	212
BmrI	ACTGGG	1 cut(s)	34
BmsI	GCATC	1 cut(s)	345
BmuI	ACTGGG	1 cut(s)	34
BplI	GAGNNNNNCTC	2 cut(s)	382, 414
Bpu14I	TTCGAA	1 cut(s)	447
BsaI	GGTCTC	1 cut(s)	34
Bse1I	ACTGG	1 cut(s)	29
BseBI	CCWGG	1 cut(s)	212
BseGI	GGATG	3 cut(s)	151, 336, 432
BseMII	CTCAG	1 cut(s)	161
BseNI	ACTGG	1 cut(s)	29
BseRI	GAGGAG	2 cut(s)	81, 238
BshNI	GGYRCC	1 cut(s)	283
BsmAI	GTCTC	1 cut(s)	34
Bso31I	GGTCTC	1 cut(s)	34
Bsp119I	TTCGAA	1 cut(s)	447
BspACI	CCGC	1 cut(s)	61
BspCNI	CTCAG	1 cut(s)	162
BspLI	GGNNCC	1 cut(s)	285
BspT104I	TTCGAA	1 cut(s)	447
BspT107I	GGYRCC	1 cut(s)	283
BspTNI	GGTCTC	1 cut(s)	34
BsrI	ACTGG	1 cut(s)	29
BssNAI	GTATAC	1 cut(s)	127
Bst1107I	GTATAC	1 cut(s)	127
Bst2UI	CCWGG	1 cut(s)	212
Bst4CI	ACNGT	2 cut(s)	139, 182
Bst6I	CTCTTC	2 cut(s)	41, 91
BstBI	TTCGAA	1 cut(s)	447
BstDEI	CTNAG	1 cut(s)	170
BstF5I	GGATG	3 cut(s)	151, 336, 432
BstMAI	GTCTC	1 cut(s)	34
BstNI	CCWGG	1 cut(s)	212
BstSCI	CCNGG	1 cut(s)	210
BstZ17I	GTATAC	1 cut(s)	127
BtsCI	GGATG	3 cut(s)	151, 336, 432
BtsIMutI	CAGTG	2 cut(s)	135, 187
Csp6I	GTAC	1 cut(s)	284
CviAII	CATG	1 cut(s)	152
CviJI	RGCY	3 cut(s)	104, 210, 236
CviKI_1	RGCY	3 cut(s)	104, 210, 236
CviQI	GTAC	1 cut(s)	284
DdeI	CTNAG	1 cut(s)	170
Eam1104I	CTCTTC	2 cut(s)	41, 91
EarI	CTCTTC	2 cut(s)	41, 91
Eco31I	GGTCTC	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	126
EcoRI	GAATTC	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	210
FaeI	CATG	1 cut(s)	155
FaiI	YATR	5 cut(s)	101, 127, 153, 200, 396
FatI	CATG	1 cut(s)	151
FblI	GTMKAC	1 cut(s)	126
FokI	GGATG	3 cut(s)	158, 323, 419
Hin1II	CATG	1 cut(s)	155
HinfI	GANTC	1 cut(s)	449
HphI	GGTGA	2 cut(s)	10, 277
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	1 cut(s)	171
Hpy188III	TCNNGA	2 cut(s)	436, 456
Hpy8I	GTNNAC	1 cut(s)	127
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	1 cut(s)	368
HpyCH4III	ACNGT	2 cut(s)	139, 182
HpyCH4IV	ACGT	1 cut(s)	162
HpyF3I	CTNAG	1 cut(s)	170
HpySE526I	ACGT	1 cut(s)	162
Hsp92II	CATG	1 cut(s)	155
KpnI	GGTACC	1 cut(s)	287
LmnI	GCTCC	1 cut(s)	403
LpnPI	CCDG	6 cut(s)	10, 29, 197, 224, 414, 449
LweI	GCATC	1 cut(s)	345
MaeII	ACGT	1 cut(s)	162
MaeIII	GTNAC	3 cut(s)	155, 365, 403
MboII	GAAGA	6 cut(s)	28, 49, 78, 119, 286, 444
MluCI	AATT	7 cut(s)	14, 80, 96, 131, 239, 296, 439
MnlI	CCTC	3 cut(s)	102, 216, 274
MroXI	GAANNNNTTC	1 cut(s)	443
MseI	TTAA	3 cut(s)	302, 351, 417
MspR9I	CCNGG	1 cut(s)	212
MvaI	CCWGG	1 cut(s)	212
NlaIII	CATG	1 cut(s)	155
NlaIV	GGNNCC	1 cut(s)	285
NmuCI	GTSAC	1 cut(s)	403
NspV	TTCGAA	1 cut(s)	447
PdmI	GAANNNNTTC	1 cut(s)	443
PfeI	GAWTC	1 cut(s)	449
Psp6I	CCWGG	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	210
PspN4I	GGNNCC	1 cut(s)	285
RsaI	GTAC	1 cut(s)	285
RsaNI	GTAC	1 cut(s)	284
SaqAI	TTAA	3 cut(s)	302, 351, 417
ScrFI	CCNGG	1 cut(s)	212
SetI	ASST	7 cut(s)	165, 192, 238, 285, 319, 384, 415
SfaNI	GCATC	1 cut(s)	345
SfuI	TTCGAA	1 cut(s)	447
Sse9I	AATT	7 cut(s)	14, 80, 96, 131, 239, 296, 439
SsiI	CCGC	1 cut(s)	61
StyD4I	CCNGG	1 cut(s)	210
TaaI	ACNGT	2 cut(s)	139, 182
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	2 cut(s)	94, 447
TasI	AATT	7 cut(s)	14, 80, 96, 131, 239, 296, 439
TfiI	GAWTC	1 cut(s)	449
Tru1I	TTAA	3 cut(s)	302, 351, 417
Tru9I	TTAA	3 cut(s)	302, 351, 417
TscAI	CASTG	2 cut(s)	142, 187
TseFI	GTSAC	1 cut(s)	403
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	1 cut(s)	140
TspRI	CASTG	2 cut(s)	142, 187
XapI	RAATTY	5 cut(s)	14, 131, 239, 296, 439
XmiI	GTMKAC	1 cut(s)	126
XmnI	GAANNNNTTC	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.