Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003502

Physical Location & Seq

Genomic Coordinates Reverse (-)

13914987 .. 13917699

Gene Structure 2713 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG152400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGATGGCCCACGGAAAAGTCAGTCTCGCTCAAGAACTCCTCCCCTCGCCGATCTTCTCCGCCACCAAAGACTCGGAGATGGCACAGAGGGAAGAGTTCGAGATGAGCGTCGCAGGATCTGGAGAGGTGGAGCCTTCGATCAGTCAGATCCTTGGAAAGCTTGACAGGTTCACGGAGATTGTGAGTGTTTTCGGTTTTGAGATCCTGGCATTTCCTTGCAACCAGTTTGCAGGACAAGACGTTTCCTGGAATGAGGAGATTCAGGAAGTTGCATGTACGAAGTTGAAAGCTGAATTTCCAATCTTTGACAAGGATGAGGCTCCCCTTTACAAGGTCTTAAAATTGGAGAAAGGTGGTCTCTTTGGAAATGGCATCAAATGGAACTTTACCAAGTTTTTGGTAAACAAAGAAGGGAAGGTTGAGGAGAGATATGCTCCCGTGACAGCACCTCTCAAAATTGAGGATCTACAGACAAAAGACATGGGGCGGGTTAAAGAAAACATAGGGAAGAAAGTGAAAAAGAAGATTATGAAGAAGAAGCAAAAATTCCAACGAGGAAGAAAAAGGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

190

Amino Acids

21.55

Weight (kDa)

9.19

Isoelectric Point (pI)

46.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GSHPx	PF00255	54 - 106	3.9e-10	Glutathione peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31570 AT2G43350 AT2G43350
fragaria_vesca	FvH4_6g25700
malus_domestica	MD04G1034400.v1.1 MD14G1027000.v1.1
prunus_persica	Prupe.1G186500_v2.0.a1 Prupe.1G186500_v2.0.a1
pyrus_communis	pycom14g02570
rosa_chinensis	RchiOBHm_Chr4g0400261 RchiOBHm_Chr4g0408201
rosa_laevigata	RLG00000008663 RLG00000015280
rosa_multiflora	Rmu_sc0001793.1_g000052 Rmu_sc0005466.1_g000001 Rmu_sc0007120.1_g000003
rosa_roxburghii	Rroxscaffold_1G00024180 Rroxscaffold_1G00051140 Rroxscaffold_4G00316840 Rroxscaffold_5G00352710 Rroxscaffold_5G00361080
rosa_rugosa	Rorug04G0084100 Rorug04G0184800
rosa_samantha	Rh1CG015500 Rh2AG152400 Rh2BG157900 Rh3BG160500 Rh4AG149100 Rh4BG145700 Rh4CG156100 Rh4DG142100 Rh5BG054800
rosa_wichuraiana	Rw1G001130 Rw3G028070 Rw4G012170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	60, 487
AclWI	GGATC	4 cut(s)	124, 142, 196, 471
AcsI	RAATTY	2 cut(s)	293, 545
AfaI	GTAC	1 cut(s)	277
AfiI	CCNNNNNNNGG	1 cut(s)	331
AgsI	TTSAA	1 cut(s)	286
AjnI	CCWGG	2 cut(s)	204, 245
AluBI	AGCT	2 cut(s)	160, 290
AluI	AGCT	2 cut(s)	160, 290
Alw26I	GTCTC	2 cut(s)	29, 362
AlwI	GGATC	4 cut(s)	124, 142, 196, 471
AlwNI	CAGNNNCTG	1 cut(s)	119
AoxI	GGCC	1 cut(s)	6
ApoI	RAATTY	2 cut(s)	293, 545
AspS9I	GGNCC	1 cut(s)	7
BccI	CCATC	1 cut(s)	73
BciT130I	CCWGG	2 cut(s)	206, 247
BcoDI	GTCTC	2 cut(s)	29, 362
BfmI	CTRYAG	1 cut(s)	467
Bme1390I	CCNGG	2 cut(s)	206, 247
BmgT120I	GGNCC	1 cut(s)	7
BmiI	GGNNCC	2 cut(s)	132, 321
BmrFI	CCNGG	2 cut(s)	206, 247
BmsI	GCATC	1 cut(s)	381
BplI	GAGNNNNNCTC	2 cut(s)	418, 450
BpmI	CTGGAG	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	15
BsaI	GGTCTC	1 cut(s)	362
BsaJI	CCNNGG	2 cut(s)	10, 151
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
Bse1I	ACTGG	1 cut(s)	223
BseBI	CCWGG	2 cut(s)	206, 247
BseDI	CCNNGG	2 cut(s)	10, 151
BseGI	GGATG	1 cut(s)	319
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseNI	ACTGG	1 cut(s)	223
BseRI	GAGGAG	3 cut(s)	29, 269, 437
BshFI	GGCC	1 cut(s)	8
BslI	CCNNNNNNNGG	1 cut(s)	331
BsmAI	GTCTC	2 cut(s)	29, 362
BsnI	GGCC	1 cut(s)	8
Bso31I	GGTCTC	1 cut(s)	362
Bsp143I	GATC	6 cut(s)	51, 116, 138, 147, 201, 463
BspACI	CCGC	2 cut(s)	60, 487
BspANI	GGCC	1 cut(s)	8
BspLI	GGNNCC	2 cut(s)	132, 321
BspPI	GGATC	4 cut(s)	124, 142, 196, 471
BspTNI	GGTCTC	1 cut(s)	362
BsrI	ACTGG	1 cut(s)	223
BssECI	CCNNGG	2 cut(s)	10, 151
BssMI	GATC	6 cut(s)	51, 116, 138, 147, 201, 463
BssT1I	CCWWGG	1 cut(s)	151
Bst2UI	CCWGG	2 cut(s)	206, 247
Bst6I	CTCTTC	1 cut(s)	87
BstDSI	CCRYGG	1 cut(s)	10
BstENI	CCTNNNNNAGG	1 cut(s)	329
BstF5I	GGATG	1 cut(s)	319
BstKTI	GATC	6 cut(s)	54, 119, 141, 150, 204, 466
BstMAI	GTCTC	2 cut(s)	29, 362
BstMBI	GATC	6 cut(s)	51, 116, 138, 147, 201, 463
BstNI	CCWGG	2 cut(s)	206, 247
BstNSI	RCATGY	1 cut(s)	276
BstSCI	CCNGG	2 cut(s)	204, 245
BstSFI	CTRYAG	1 cut(s)	467
BstX2I	RGATCY	4 cut(s)	116, 147, 201, 463
BstXI	CCANNNNNNTGG	1 cut(s)	397
BstYI	RGATCY	4 cut(s)	116, 147, 201, 463
BsuRI	GGCC	1 cut(s)	8
BtgI	CCRYGG	1 cut(s)	10
BtsCI	GGATG	1 cut(s)	319
CaiI	CAGNNNCTG	1 cut(s)	119
Cfr13I	GGNCC	1 cut(s)	7
CseI	GACGC	1 cut(s)	97
Csp6I	GTAC	1 cut(s)	276
CviAII	CATG	2 cut(s)	273, 481
CviJI	RGCY	5 cut(s)	8, 133, 160, 290, 320
CviKI_1	RGCY	5 cut(s)	8, 133, 160, 290, 320
CviQI	GTAC	1 cut(s)	276
DpnI	GATC	6 cut(s)	53, 118, 140, 149, 203, 465
DpnII	GATC	6 cut(s)	51, 116, 138, 147, 201, 463
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
EciI	GGCGGA	1 cut(s)	49
Eco130I	CCWWGG	1 cut(s)	151
Eco31I	GGTCTC	1 cut(s)	362
EcoNI	CCTNNNNNAGG	1 cut(s)	329
EcoRII	CCWGG	2 cut(s)	204, 245
EcoT14I	CCWWGG	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	151
FaeI	CATG	2 cut(s)	276, 484
FaiI	YATR	6 cut(s)	274, 432, 482, 503, 530, 571
FatI	CATG	2 cut(s)	272, 480
FauI	CCCGC	1 cut(s)	480
FokI	GGATG	1 cut(s)	326
GsuI	CTGGAG	1 cut(s)	141
HaeIII	GGCC	1 cut(s)	8
HgaI	GACGC	1 cut(s)	97
Hin1II	CATG	2 cut(s)	276, 484
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	2 cut(s)	71, 259
Hpy166II	GTNNAC	2 cut(s)	171, 403
Hpy188I	TCNGA	2 cut(s)	76, 147
Hpy188III	TCNNGA	4 cut(s)	32, 100, 120, 263
Hpy8I	GTNNAC	2 cut(s)	171, 403
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	3 cut(s)	144, 404, 409
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	3 cut(s)	219, 230, 272
HpySE526I	ACGT	1 cut(s)	240
Hsp92II	CATG	2 cut(s)	276, 484
Kzo9I	GATC	6 cut(s)	51, 116, 138, 147, 201, 463
LmnI	GCTCC	3 cut(s)	130, 325, 439
LweI	GCATC	1 cut(s)	381
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	6 cut(s)	53, 118, 140, 149, 203, 465
MboI	GATC	6 cut(s)	51, 116, 138, 147, 201, 463
MboII	GAAGA	7 cut(s)	46, 104, 520, 535, 544, 547, 570
MflI	RGATCY	4 cut(s)	116, 147, 201, 463
MluCI	AATT	4 cut(s)	293, 341, 456, 545
MlyI	GAGTC	1 cut(s)	65
MseI	TTAA	2 cut(s)	338, 492
MspR9I	CCNGG	2 cut(s)	206, 247
MvaI	CCWGG	2 cut(s)	206, 247
NdeII	GATC	6 cut(s)	51, 116, 138, 147, 201, 463
NlaIII	CATG	2 cut(s)	276, 484
NlaIV	GGNNCC	2 cut(s)	132, 321
NmuCI	GTSAC	1 cut(s)	439
NspI	RCATGY	1 cut(s)	276
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PfeI	GAWTC	1 cut(s)	259
PfoI	TCCNGGA	1 cut(s)	245
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
Psp6I	CCWGG	2 cut(s)	204, 245
PspGI	CCWGG	2 cut(s)	204, 245
PspN4I	GGNNCC	2 cut(s)	132, 321
PspPI	GGNCC	1 cut(s)	7
PstNI	CAGNNNCTG	1 cut(s)	119
PsuI	RGATCY	4 cut(s)	116, 147, 201, 463
RsaI	GTAC	1 cut(s)	277
RsaNI	GTAC	1 cut(s)	276
SaqAI	TTAA	2 cut(s)	338, 492
Sau3AI	GATC	6 cut(s)	51, 116, 138, 147, 201, 463
Sau96I	GGNCC	1 cut(s)	7
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	2 cut(s)	206, 247
SetI	ASST	9 cut(s)	129, 162, 170, 243, 292, 336, 355, 420, 451
SfaNI	GCATC	1 cut(s)	381
SfcI	CTRYAG	1 cut(s)	467
SmlI	CTYRAG	1 cut(s)	30
SmoI	CTYRAG	1 cut(s)	30
Sse9I	AATT	4 cut(s)	293, 341, 456, 545
SsiI	CCGC	2 cut(s)	60, 487
StyD4I	CCNGG	2 cut(s)	204, 245
StyI	CCWWGG	1 cut(s)	151
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	2 cut(s)	99, 137
TasI	AATT	4 cut(s)	293, 341, 456, 545
TfiI	GAWTC	1 cut(s)	259
Tru1I	TTAA	2 cut(s)	338, 492
Tru9I	TTAA	2 cut(s)	338, 492
TseFI	GTSAC	1 cut(s)	439
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	1 cut(s)	545
TspGWI	ACGGA	2 cut(s)	27, 188
XagI	CCTNNNNNAGG	1 cut(s)	329
XapI	RAATTY	2 cut(s)	293, 545
XceI	RCATGY	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.