Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0003502

Physical Location & Seq

Genomic Coordinates Forward (+)

3840968 .. 3845818

Gene Structure 4851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1034400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGCGTTTGTTGAAATTCACCAACTGGGTCTCTCTCTTCTTTCTGGGTTTTGCTTTCTTCTGCTACTTTTACACTTCTCAATTCTCTTCTCCTCGAATTATGGCTGAAGAAAGTTCCAAATCTGTTTACGACTTCACTGTCAAGGATATTCATGGTAACGACGTAAATCTGAGTGAATACAGTGGGAAGGTTCTTCTGATTGTGAATGTTGCTTCAAAATGTGGTTTAACACAATCCAACTACAAGGAATTAAGTGTTTTGTATGAAAAGTACAAAAACAAAGGTTTTGAGATTTTGGCGTTTCCTTGCAACCAGTTTGGAGGACAAGAGCCGGGAAACAATGAGGAGATTCAAGAAGTTGCATGCACTAGATTTAAAGCTGAATTTCCAATCTTTGACAAGATTGAGGTGAATGGGAAGAACGAGGCACCCCTTTACAAATTCTTAAAGGTACAGAAAGGTGGGATCTTTGGGAGTGGCATCAAATGGAACTTTACGAAGTTTCTGGTTAACAAAGAAGGGAAGGTTGTGGAGAGATATGCTCCTGTGACATCACCTCTTAAAATTGAGACATCCAGAATTTGTTGGAATCTTCTTGAGTATCAAGGACAGCAGGAAGTGTCTGGTTTGGCCTCACCGGAAATAAAAACGTGTTTGCAGATGAAGAAAATGATCAAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

228

Amino Acids

25.93

Weight (kDa)

8.88

Isoelectric Point (pI)

43.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Redoxin	PF08534	41 - 101	1.1e-06	Redoxin
GSHPx	PF00255	42 - 150	1.4e-44	Glutathione peroxidase
AhpC-TSA	PF00578	42 - 103	4.3e-08	AhpC/TSA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31570 AT2G43350 AT2G43350
fragaria_vesca	FvH4_6g25700
malus_domestica	MD04G1034400.v1.1 MD14G1027000.v1.1
prunus_persica	Prupe.1G186500_v2.0.a1 Prupe.1G186500_v2.0.a1
pyrus_communis	pycom14g02570
rosa_chinensis	RchiOBHm_Chr4g0400261 RchiOBHm_Chr4g0408201
rosa_laevigata	RLG00000008663 RLG00000015280
rosa_multiflora	Rmu_sc0001793.1_g000052 Rmu_sc0005466.1_g000001 Rmu_sc0007120.1_g000003
rosa_roxburghii	Rroxscaffold_1G00024180 Rroxscaffold_1G00051140 Rroxscaffold_4G00316840 Rroxscaffold_5G00352710 Rroxscaffold_5G00361080
rosa_rugosa	Rorug04G0084100 Rorug04G0184800
rosa_samantha	Rh1CG015500 Rh2AG152400 Rh2BG157900 Rh3BG160500 Rh4AG149100 Rh4BG145700 Rh4CG156100 Rh4DG142100 Rh5BG054800
rosa_wichuraiana	Rw1G001130 Rw3G028070 Rw4G012170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	137
AccB1I	GGYRCC	1 cut(s)	427
AclWI	GGATC	1 cut(s)	473
AcsI	RAATTY	4 cut(s)	14, 383, 440, 579
AcuI	CTGAAG	1 cut(s)	126
AfaI	GTAC	2 cut(s)	272, 453
AflIII	ACRYGT	1 cut(s)	650
AgsI	TTSAA	3 cut(s)	13, 216, 353
AluBI	AGCT	1 cut(s)	380
AluI	AGCT	1 cut(s)	380
Alw26I	GTCTC	2 cut(s)	34, 563
AlwI	GGATC	1 cut(s)	473
AoxI	GGCC	1 cut(s)	630
ApoI	RAATTY	4 cut(s)	14, 383, 440, 579
AsuC2I	CCSGG	1 cut(s)	333
AsuHPI	GGTGA	4 cut(s)	10, 421, 546, 627
BanI	GGYRCC	1 cut(s)	427
BclI	TGATCA	1 cut(s)	672
BcnI	CCSGG	1 cut(s)	333
BcoDI	GTCTC	2 cut(s)	34, 563
BfaI	CTAG	1 cut(s)	369
Bme1390I	CCNGG	1 cut(s)	333
BmiI	GGNNCC	1 cut(s)	429
BmrFI	CCNGG	1 cut(s)	333
BmrI	ACTGGG	1 cut(s)	34
BmsI	GCATC	1 cut(s)	489
BmuI	ACTGGG	1 cut(s)	34
BplI	GAGNNNNNCTC	2 cut(s)	526, 558
BpuEI	CTTGAG	1 cut(s)	617
BpuMI	CCSGG	1 cut(s)	333
BsaI	GGTCTC	1 cut(s)	34
BsaWI	WCCGGW	1 cut(s)	637
Bse1I	ACTGG	2 cut(s)	29, 313
BseGI	GGATG	1 cut(s)	572
BseMII	CTCAG	1 cut(s)	161
BseNI	ACTGG	2 cut(s)	29, 313
BseRI	GAGGAG	2 cut(s)	81, 359
BshFI	GGCC	1 cut(s)	632
BshNI	GGYRCC	1 cut(s)	427
BsiSI	CCGG	2 cut(s)	332, 638
BsmAI	GTCTC	2 cut(s)	34, 563
BsnI	GGCC	1 cut(s)	632
Bso31I	GGTCTC	1 cut(s)	34
Bsp143I	GATC	2 cut(s)	465, 672
BspANI	GGCC	1 cut(s)	632
BspCNI	CTCAG	1 cut(s)	162
BspLI	GGNNCC	1 cut(s)	429
BspPI	GGATC	1 cut(s)	473
BspT107I	GGYRCC	1 cut(s)	427
BspTNI	GGTCTC	1 cut(s)	34
BsrI	ACTGG	2 cut(s)	29, 313
BssMI	GATC	2 cut(s)	465, 672
Bst4CI	ACNGT	2 cut(s)	139, 182
Bst6I	CTCTTC	2 cut(s)	41, 91
BstC8I	GCNNGC	1 cut(s)	364
BstDEI	CTNAG	1 cut(s)	170
BstF5I	GGATG	1 cut(s)	572
BstKTI	GATC	2 cut(s)	468, 675
BstMAI	GTCTC	2 cut(s)	34, 563
BstMBI	GATC	2 cut(s)	465, 672
BstNSI	RCATGY	1 cut(s)	366
BstSCI	CCNGG	1 cut(s)	331
BstX2I	RGATCY	1 cut(s)	465
BstYI	RGATCY	1 cut(s)	465
BsuRI	GGCC	1 cut(s)	632
BtsCI	GGATG	1 cut(s)	572
BtsIMutI	CAGTG	2 cut(s)	135, 187
Cac8I	GCNNGC	1 cut(s)	364
Csp6I	GTAC	2 cut(s)	271, 452
CviAII	CATG	2 cut(s)	152, 363
CviJI	RGCY	4 cut(s)	104, 331, 380, 632
CviKI_1	RGCY	4 cut(s)	104, 331, 380, 632
CviQI	GTAC	2 cut(s)	271, 452
DdeI	CTNAG	1 cut(s)	170
DpnI	GATC	2 cut(s)	467, 674
DpnII	GATC	2 cut(s)	465, 672
DraI	TTTAAA	1 cut(s)	376
DrdI	GACNNNNNNGTC	1 cut(s)	137
DseDI	GACNNNNNNGTC	1 cut(s)	137
Eam1104I	CTCTTC	2 cut(s)	41, 91
EarI	CTCTTC	2 cut(s)	41, 91
Eco31I	GGTCTC	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	126
FaeI	CATG	2 cut(s)	155, 366
FaiI	YATR	6 cut(s)	101, 153, 264, 364, 540, 682
FatI	CATG	2 cut(s)	151, 362
FbaI	TGATCA	1 cut(s)	672
FokI	GGATG	1 cut(s)	559
FspBI	CTAG	1 cut(s)	369
HaeIII	GGCC	1 cut(s)	632
HapII	CCGG	2 cut(s)	332, 638
Hin1II	CATG	2 cut(s)	155, 366
HincII	GTYRAC	1 cut(s)	511
HindII	GTYRAC	1 cut(s)	511
HinfI	GANTC	2 cut(s)	349, 589
HpaI	GTTAAC	1 cut(s)	511
HpaII	CCGG	2 cut(s)	332, 638
HphI	GGTGA	4 cut(s)	10, 421, 546, 627
Hpy166II	GTNNAC	2 cut(s)	127, 511
Hpy188I	TCNGA	2 cut(s)	171, 198
Hpy188III	TCNNGA	3 cut(s)	353, 576, 596
Hpy8I	GTNNAC	2 cut(s)	127, 511
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	3 cut(s)	181, 512, 517
HpyCH4III	ACNGT	2 cut(s)	139, 182
HpyCH4IV	ACGT	2 cut(s)	162, 650
HpyCH4V	TGCA	4 cut(s)	309, 362, 366, 658
HpyF3I	CTNAG	1 cut(s)	170
HpySE526I	ACGT	2 cut(s)	162, 650
Hsp92II	CATG	2 cut(s)	155, 366
Ksp22I	TGATCA	1 cut(s)	672
KspAI	GTTAAC	1 cut(s)	511
Kzo9I	GATC	2 cut(s)	465, 672
LmnI	GCTCC	1 cut(s)	547
LweI	GCATC	1 cut(s)	489
MaeI	CTAG	1 cut(s)	369
MaeII	ACGT	2 cut(s)	162, 650
MaeIII	GTNAC	2 cut(s)	155, 547
MalI	GATC	2 cut(s)	467, 674
MboI	GATC	2 cut(s)	465, 672
MboII	GAAGA	8 cut(s)	28, 49, 78, 119, 185, 430, 584, 676
MflI	RGATCY	1 cut(s)	465
MluCI	AATT	8 cut(s)	14, 80, 96, 248, 383, 440, 564, 579
MmeI	TCCRAC	2 cut(s)	261, 566
MnlI	CCTC	7 cut(s)	102, 314, 337, 400, 418, 567, 643
MseI	TTAA	6 cut(s)	227, 251, 375, 446, 510, 561
MspI	CCGG	2 cut(s)	332, 638
MspR9I	CCNGG	1 cut(s)	333
NciI	CCSGG	1 cut(s)	333
NdeII	GATC	2 cut(s)	465, 672
NlaIII	CATG	2 cut(s)	155, 366
NlaIV	GGNNCC	1 cut(s)	429
NmuCI	GTSAC	1 cut(s)	547
NspI	RCATGY	1 cut(s)	366
PaeI	GCATGC	1 cut(s)	366
PfeI	GAWTC	2 cut(s)	349, 589
PspN4I	GGNNCC	1 cut(s)	429
PsuI	RGATCY	1 cut(s)	465
RsaI	GTAC	2 cut(s)	272, 453
RsaNI	GTAC	2 cut(s)	271, 452
SaqAI	TTAA	6 cut(s)	227, 251, 375, 446, 510, 561
Sau3AI	GATC	2 cut(s)	465, 672
ScrFI	CCNGG	1 cut(s)	333
SfaNI	GCATC	1 cut(s)	489
SmlI	CTYRAG	1 cut(s)	596
SmoI	CTYRAG	1 cut(s)	596
SphI	GCATGC	1 cut(s)	366
Sse9I	AATT	8 cut(s)	14, 80, 96, 248, 383, 440, 564, 579
SspMI	CTAG	1 cut(s)	369
StyD4I	CCNGG	1 cut(s)	331
TaaI	ACNGT	2 cut(s)	139, 182
TaiI	ACGT	2 cut(s)	165, 653
TaqI	TCGA	1 cut(s)	94
TasI	AATT	8 cut(s)	14, 80, 96, 248, 383, 440, 564, 579
TatI	WGTACW	1 cut(s)	270
TfiI	GAWTC	2 cut(s)	349, 589
Tru1I	TTAA	6 cut(s)	227, 251, 375, 446, 510, 561
Tru9I	TTAA	6 cut(s)	227, 251, 375, 446, 510, 561
TscAI	CASTG	2 cut(s)	142, 187
TseFI	GTSAC	1 cut(s)	547
Tsp45I	GTSAC	1 cut(s)	547
TspDTI	ATGAA	3 cut(s)	140, 279, 677
TspRI	CASTG	2 cut(s)	142, 187
XapI	RAATTY	4 cut(s)	14, 383, 440, 579
XceI	RCATGY	1 cut(s)	366
XspI	CTAG	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.