Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003502

Physical Location & Seq

Genomic Coordinates Forward (+)

4462898 .. 4470257

Gene Structure 7360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG054800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGATGGCCCACGGAAAAGTCAGTCTCGCTCAAGAACTCCTCCCCTCGCCGATCTTCTCCGCCACCAAAGACTCGGAGATGGCACAGAGGGAAGAGTTCGAGATGAGCGTCGCAGGATCTGGAGAGGTGGAGCCTTCGATCAGTCAGATCCTTGGAAAGCTTGACAGAAAGGCTGAAGAATCAGGTTTTGAGATCCTGGCATTTCCTTACAACCAGTTTGCAGGACAAGACGTTTCCTGGAATGAGGAGATTCAGGAAGTTGCATGTACGAAGTTGAAAGCTGAATTTCCAATCTTTGACAAGGATGAGGCTCCCCTTTACAAGGTCTTAAAATTGGAGAAAGGTGGTCTCTTTGGAAATGGCATCAAATGGAACTTTACCAAGTTTTTGGTAAACAAAGAAGAGAAGGTTGTGGAGAGATATGCTCCCGTGACAGCACCTCTCAAAATTGAGAAAGACATCCAGAATCTATTGGAATCTTCTTGTGTATCAAGGGATTGCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

168

Amino Acids

18.86

Weight (kDa)

4.84

Isoelectric Point (pI)

51.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GSHPx	PF00255	51 - 103	9.4e-10	Glutathione peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31570 AT2G43350 AT2G43350
fragaria_vesca	FvH4_6g25700
malus_domestica	MD04G1034400.v1.1 MD14G1027000.v1.1
prunus_persica	Prupe.1G186500_v2.0.a1 Prupe.1G186500_v2.0.a1
pyrus_communis	pycom14g02570
rosa_chinensis	RchiOBHm_Chr4g0400261 RchiOBHm_Chr4g0408201
rosa_laevigata	RLG00000008663 RLG00000015280
rosa_multiflora	Rmu_sc0001793.1_g000052 Rmu_sc0005466.1_g000001 Rmu_sc0007120.1_g000003
rosa_roxburghii	Rroxscaffold_1G00024180 Rroxscaffold_1G00051140 Rroxscaffold_4G00316840 Rroxscaffold_5G00352710 Rroxscaffold_5G00361080
rosa_rugosa	Rorug04G0084100 Rorug04G0184800
rosa_samantha	Rh1CG015500 Rh2AG152400 Rh2BG157900 Rh3BG160500 Rh4AG149100 Rh4BG145700 Rh4CG156100 Rh4DG142100 Rh5BG054800
rosa_wichuraiana	Rw1G001130 Rw3G028070 Rw4G012170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	60
AclWI	GGATC	3 cut(s)	124, 142, 187
AcsI	RAATTY	1 cut(s)	284
AcuI	CTGAAG	1 cut(s)	195
AfaI	GTAC	1 cut(s)	268
AfiI	CCNNNNNNNGG	1 cut(s)	322
AgsI	TTSAA	1 cut(s)	277
AjnI	CCWGG	2 cut(s)	195, 236
AluBI	AGCT	2 cut(s)	160, 281
AluI	AGCT	2 cut(s)	160, 281
Alw26I	GTCTC	2 cut(s)	29, 353
AlwI	GGATC	3 cut(s)	124, 142, 187
AlwNI	CAGNNNCTG	1 cut(s)	119
AoxI	GGCC	1 cut(s)	6
ApoI	RAATTY	1 cut(s)	284
AspS9I	GGNCC	1 cut(s)	7
BccI	CCATC	1 cut(s)	73
BciT130I	CCWGG	2 cut(s)	197, 238
BcoDI	GTCTC	2 cut(s)	29, 353
Bme1390I	CCNGG	2 cut(s)	197, 238
BmgT120I	GGNCC	1 cut(s)	7
BmiI	GGNNCC	2 cut(s)	132, 312
BmrFI	CCNGG	2 cut(s)	197, 238
BmsI	GCATC	1 cut(s)	372
BplI	GAGNNNNNCTC	2 cut(s)	409, 441
BpmI	CTGGAG	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	15
BsaI	GGTCTC	1 cut(s)	353
BsaJI	CCNNGG	2 cut(s)	10, 151
Bsc4I	CCNNNNNNNGG	1 cut(s)	322
Bse1I	ACTGG	1 cut(s)	214
BseBI	CCWGG	2 cut(s)	197, 238
BseDI	CCNNGG	2 cut(s)	10, 151
BseGI	GGATG	2 cut(s)	310, 459
BseLI	CCNNNNNNNGG	1 cut(s)	322
BseNI	ACTGG	1 cut(s)	214
BseRI	GAGGAG	2 cut(s)	29, 260
BshFI	GGCC	1 cut(s)	8
BslI	CCNNNNNNNGG	1 cut(s)	322
BsmAI	GTCTC	2 cut(s)	29, 353
BsnI	GGCC	1 cut(s)	8
Bso31I	GGTCTC	1 cut(s)	353
Bsp143I	GATC	5 cut(s)	51, 116, 138, 147, 192
BspACI	CCGC	1 cut(s)	60
BspANI	GGCC	1 cut(s)	8
BspLI	GGNNCC	2 cut(s)	132, 312
BspPI	GGATC	3 cut(s)	124, 142, 187
BspTNI	GGTCTC	1 cut(s)	353
BsrI	ACTGG	1 cut(s)	214
BssECI	CCNNGG	2 cut(s)	10, 151
BssMI	GATC	5 cut(s)	51, 116, 138, 147, 192
BssT1I	CCWWGG	1 cut(s)	151
Bst2UI	CCWGG	2 cut(s)	197, 238
Bst6I	CTCTTC	2 cut(s)	87, 396
BstDSI	CCRYGG	1 cut(s)	10
BstENI	CCTNNNNNAGG	1 cut(s)	320
BstF5I	GGATG	2 cut(s)	310, 459
BstKTI	GATC	5 cut(s)	54, 119, 141, 150, 195
BstMAI	GTCTC	2 cut(s)	29, 353
BstMBI	GATC	5 cut(s)	51, 116, 138, 147, 192
BstNI	CCWGG	2 cut(s)	197, 238
BstNSI	RCATGY	1 cut(s)	267
BstSCI	CCNGG	2 cut(s)	195, 236
BstX2I	RGATCY	3 cut(s)	116, 147, 192
BstXI	CCANNNNNNTGG	1 cut(s)	388
BstYI	RGATCY	3 cut(s)	116, 147, 192
BsuRI	GGCC	1 cut(s)	8
BtgI	CCRYGG	1 cut(s)	10
BtsCI	GGATG	2 cut(s)	310, 459
CaiI	CAGNNNCTG	1 cut(s)	119
Cfr13I	GGNCC	1 cut(s)	7
CseI	GACGC	1 cut(s)	97
Csp6I	GTAC	1 cut(s)	267
CviAII	CATG	1 cut(s)	264
CviJI	RGCY	6 cut(s)	8, 133, 160, 173, 281, 311
CviKI_1	RGCY	6 cut(s)	8, 133, 160, 173, 281, 311
CviQI	GTAC	1 cut(s)	267
DpnI	GATC	5 cut(s)	53, 118, 140, 149, 194
DpnII	GATC	5 cut(s)	51, 116, 138, 147, 192
Eam1104I	CTCTTC	2 cut(s)	87, 396
EarI	CTCTTC	2 cut(s)	87, 396
EciI	GGCGGA	1 cut(s)	49
Eco130I	CCWWGG	1 cut(s)	151
Eco31I	GGTCTC	1 cut(s)	353
Eco57I	CTGAAG	1 cut(s)	195
EcoNI	CCTNNNNNAGG	1 cut(s)	320
EcoRII	CCWGG	2 cut(s)	195, 236
EcoT14I	CCWWGG	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	151
FaeI	CATG	1 cut(s)	267
FaiI	YATR	2 cut(s)	265, 423
FatI	CATG	1 cut(s)	263
FokI	GGATG	2 cut(s)	317, 446
GsuI	CTGGAG	1 cut(s)	141
HaeIII	GGCC	1 cut(s)	8
HgaI	GACGC	1 cut(s)	97
Hin1II	CATG	1 cut(s)	267
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	5 cut(s)	71, 179, 250, 466, 476
Hpy166II	GTNNAC	1 cut(s)	394
Hpy188I	TCNGA	2 cut(s)	76, 147
Hpy188III	TCNNGA	5 cut(s)	32, 100, 120, 254, 463
Hpy8I	GTNNAC	1 cut(s)	394
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	2 cut(s)	144, 400
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	2 cut(s)	221, 263
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	1 cut(s)	267
Kzo9I	GATC	5 cut(s)	51, 116, 138, 147, 192
LmnI	GCTCC	3 cut(s)	130, 316, 430
LweI	GCATC	1 cut(s)	372
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	430
MalI	GATC	5 cut(s)	53, 118, 140, 149, 194
MboI	GATC	5 cut(s)	51, 116, 138, 147, 192
MboII	GAAGA	5 cut(s)	46, 104, 188, 413, 471
MflI	RGATCY	3 cut(s)	116, 147, 192
MluCI	AATT	3 cut(s)	284, 332, 447
MlyI	GAGTC	1 cut(s)	65
MnlI	CCTC	7 cut(s)	50, 55, 81, 118, 238, 301, 450
MseI	TTAA	2 cut(s)	329, 505
MspR9I	CCNGG	2 cut(s)	197, 238
MvaI	CCWGG	2 cut(s)	197, 238
NdeII	GATC	5 cut(s)	51, 116, 138, 147, 192
NlaIII	CATG	1 cut(s)	267
NlaIV	GGNNCC	2 cut(s)	132, 312
NmuCI	GTSAC	1 cut(s)	430
NspI	RCATGY	1 cut(s)	267
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PfeI	GAWTC	4 cut(s)	179, 250, 466, 476
PfoI	TCCNGGA	1 cut(s)	236
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
Psp6I	CCWGG	2 cut(s)	195, 236
PspGI	CCWGG	2 cut(s)	195, 236
PspN4I	GGNNCC	2 cut(s)	132, 312
PspPI	GGNCC	1 cut(s)	7
PstNI	CAGNNNCTG	1 cut(s)	119
PsuI	RGATCY	3 cut(s)	116, 147, 192
RsaI	GTAC	1 cut(s)	268
RsaNI	GTAC	1 cut(s)	267
SaqAI	TTAA	2 cut(s)	329, 505
Sau3AI	GATC	5 cut(s)	51, 116, 138, 147, 192
Sau96I	GGNCC	1 cut(s)	7
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	2 cut(s)	197, 238
SetI	ASST	9 cut(s)	129, 162, 187, 234, 283, 327, 346, 411, 442
SfaNI	GCATC	1 cut(s)	372
SmlI	CTYRAG	1 cut(s)	30
SmoI	CTYRAG	1 cut(s)	30
Sse9I	AATT	3 cut(s)	284, 332, 447
SsiI	CCGC	1 cut(s)	60
StyD4I	CCNGG	2 cut(s)	195, 236
StyI	CCWWGG	1 cut(s)	151
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	2 cut(s)	99, 137
TasI	AATT	3 cut(s)	284, 332, 447
TfiI	GAWTC	4 cut(s)	179, 250, 466, 476
Tru1I	TTAA	2 cut(s)	329, 505
Tru9I	TTAA	2 cut(s)	329, 505
TseFI	GTSAC	1 cut(s)	430
Tsp45I	GTSAC	1 cut(s)	430
TspGWI	ACGGA	1 cut(s)	27
XagI	CCTNNNNNAGG	1 cut(s)	320
XapI	RAATTY	1 cut(s)	284
XceI	RCATGY	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.