Rroxscaffold_5G00361080

Belongs to the glutathione peroxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0003502
Physical Location & Seq
Reverse (-)
41707327 .. 41708851
1525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00361080.1

Sequence Viewer

Length: 396 bp
ATGATGGCCTATGGAAAAGTCGGTCTCGCTCAAGAACTCCTCCCCTCGCCGATCTTCTCCGCCACCAAAGATGTCTCGGACTCGGAGATGGCACGGAGGGAAGAGTTCGAGATGAGCGTCGCAGTGGTCCGGAGAGGTCAAGAATCAGGTTTTGAGATCCCGGCATTTCCTTGCAACCGAGTTTGCAGGACAAGACATTTCTGGAATGAGGAGATTCGGGAAGTTGCATGTACGAAGTTGAAAGCTGAATTTCCAATCTTTGACAAGGATGAGGCTCCCCTTTACAAGGTCTTAAAATTGGAGAAAGGTGGTCTCTTTGGAAATGGCATCAAATGGAACTTTACCAAGTTTTTGGTAAACAAAGAAGGGAAGGTTGTGGAGAGATATGCTCTGTGA

Protein Analysis

131

Amino Acids

15.01

Weight (kDa)

8.43

Isoelectric Point (pI)

50.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GSHPx PF00255 34 - 91 3e-06 Glutathione peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 129
AciI CCGC 1 cut(s) 60
AclWI GGATC 1 cut(s) 151
AcsI RAATTY 1 cut(s) 248
AfaI GTAC 1 cut(s) 232
AfiI CCNNNNNNNGG 1 cut(s) 286
AgsI TTSAA 1 cut(s) 241
AluBI AGCT 1 cut(s) 245
AluI AGCT 1 cut(s) 245
Alw26I GTCTC 3 cut(s) 29, 79, 317
AlwI GGATC 1 cut(s) 151
Aor13HI TCCGGA 1 cut(s) 129
AoxI GGCC 1 cut(s) 6
ApoI RAATTY 1 cut(s) 248
AspS9I GGNCC 1 cut(s) 127
AsuC2I CCSGG 1 cut(s) 161
AvaII GGWCC 1 cut(s) 127
BccI CCATC 1 cut(s) 82
BcnI CCSGG 1 cut(s) 161
BcoDI GTCTC 3 cut(s) 29, 79, 317
Bme1390I CCNGG 1 cut(s) 161
Bme18I GGWCC 1 cut(s) 127
BmgT120I GGNCC 1 cut(s) 127
BmiI GGNNCC 1 cut(s) 276
BmrFI CCNGG 1 cut(s) 161
BmsI GCATC 1 cut(s) 336
BplI GAGNNNNNCTC 1 cut(s) 373
BpuEI CTTGAG 1 cut(s) 15
BpuMI CCSGG 1 cut(s) 161
BsaI GGTCTC 2 cut(s) 29, 317
BsaWI WCCGGW 1 cut(s) 129
Bsc4I CCNNNNNNNGG 1 cut(s) 286
BseAI TCCGGA 1 cut(s) 129
BseGI GGATG 1 cut(s) 274
BseLI CCNNNNNNNGG 1 cut(s) 286
BseRI GAGGAG 2 cut(s) 29, 224
BshFI GGCC 1 cut(s) 8
BsiSI CCGG 2 cut(s) 130, 161
BslI CCNNNNNNNGG 1 cut(s) 286
BsmAI GTCTC 3 cut(s) 29, 79, 317
BsnI GGCC 1 cut(s) 8
Bso31I GGTCTC 2 cut(s) 29, 317
Bsp13I TCCGGA 1 cut(s) 129
Bsp143I GATC 2 cut(s) 51, 156
BspACI CCGC 1 cut(s) 60
BspANI GGCC 1 cut(s) 8
BspEI TCCGGA 1 cut(s) 129
BspLI GGNNCC 1 cut(s) 276
BspPI GGATC 1 cut(s) 151
BspTNI GGTCTC 2 cut(s) 29, 317
BssMI GATC 2 cut(s) 51, 156
Bst6I CTCTTC 1 cut(s) 96
BstENI CCTNNNNNAGG 1 cut(s) 284
BstF5I GGATG 1 cut(s) 274
BstKTI GATC 2 cut(s) 54, 159
BstMAI GTCTC 3 cut(s) 29, 79, 317
BstMBI GATC 2 cut(s) 51, 156
BstNSI RCATGY 1 cut(s) 231
BstSCI CCNGG 1 cut(s) 159
BstX2I RGATCY 1 cut(s) 156
BstXI CCANNNNNNTGG 1 cut(s) 352
BstYI RGATCY 1 cut(s) 156
BsuRI GGCC 1 cut(s) 8
BtsCI GGATG 1 cut(s) 274
BtsI GCAGTG 1 cut(s) 129
BtsIMutI CAGTG 1 cut(s) 129
Cfr13I GGNCC 1 cut(s) 127
CseI GACGC 1 cut(s) 106
Csp6I GTAC 1 cut(s) 231
CviAII CATG 1 cut(s) 228
CviJI RGCY 3 cut(s) 8, 245, 275
CviKI_1 RGCY 3 cut(s) 8, 245, 275
CviQI GTAC 1 cut(s) 231
DpnI GATC 2 cut(s) 53, 158
DpnII GATC 2 cut(s) 51, 156
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
EciI GGCGGA 1 cut(s) 49
Eco31I GGTCTC 2 cut(s) 29, 317
Eco47I GGWCC 1 cut(s) 127
EcoNI CCTNNNNNAGG 1 cut(s) 284
FaeI CATG 1 cut(s) 231
FaiI YATR 3 cut(s) 12, 229, 387
FatI CATG 1 cut(s) 227
FokI GGATG 1 cut(s) 281
HaeIII GGCC 1 cut(s) 8
HapII CCGG 2 cut(s) 130, 161
HgaI GACGC 1 cut(s) 106
Hin1II CATG 1 cut(s) 231
HinfI GANTC 3 cut(s) 80, 143, 214
HpaII CCGG 2 cut(s) 130, 161
Hpy166II GTNNAC 1 cut(s) 358
Hpy188I TCNGA 2 cut(s) 79, 85
Hpy188III TCNNGA 6 cut(s) 32, 109, 130, 140, 202, 218
Hpy8I GTNNAC 1 cut(s) 358
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 2 cut(s) 359, 364
HpyCH4V TGCA 3 cut(s) 174, 186, 227
Hsp92II CATG 1 cut(s) 231
Kpn2I TCCGGA 1 cut(s) 129
Kzo9I GATC 2 cut(s) 51, 156
LmnI GCTCC 1 cut(s) 280
LpnPI CCDG 5 cut(s) 132, 143, 172, 174, 187
LweI GCATC 1 cut(s) 336
MalI GATC 2 cut(s) 53, 158
MboI GATC 2 cut(s) 51, 156
MboII GAAGA 2 cut(s) 46, 113
MflI RGATCY 1 cut(s) 156
MluCI AATT 2 cut(s) 248, 296
MlyI GAGTC 1 cut(s) 74
MnlI CCTC 6 cut(s) 50, 55, 90, 128, 202, 265
MroI TCCGGA 1 cut(s) 129
MseI TTAA 1 cut(s) 293
MspI CCGG 2 cut(s) 130, 161
MspR9I CCNGG 1 cut(s) 161
NciI CCSGG 1 cut(s) 161
NdeII GATC 2 cut(s) 51, 156
NlaIII CATG 1 cut(s) 231
NlaIV GGNNCC 1 cut(s) 276
NspI RCATGY 1 cut(s) 231
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PfeI GAWTC 2 cut(s) 143, 214
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
PspN4I GGNNCC 1 cut(s) 276
PspPI GGNCC 1 cut(s) 127
PsuI RGATCY 1 cut(s) 156
RsaI GTAC 1 cut(s) 232
RsaNI GTAC 1 cut(s) 231
SaqAI TTAA 1 cut(s) 293
Sau3AI GATC 2 cut(s) 51, 156
Sau96I GGNCC 1 cut(s) 127
SchI GAGTC 1 cut(s) 74
ScrFI CCNGG 1 cut(s) 161
SetI ASST 6 cut(s) 139, 151, 247, 291, 310, 375
SfaNI GCATC 1 cut(s) 336
SinI GGWCC 1 cut(s) 127
SmlI CTYRAG 1 cut(s) 30
SmoI CTYRAG 1 cut(s) 30
Sse9I AATT 2 cut(s) 248, 296
SsiI CCGC 1 cut(s) 60
StyD4I CCNGG 1 cut(s) 159
TaqI TCGA 1 cut(s) 108
TaqII GACCGA 1 cut(s) 11
TasI AATT 2 cut(s) 248, 296
TfiI GAWTC 2 cut(s) 143, 214
Tru1I TTAA 1 cut(s) 293
Tru9I TTAA 1 cut(s) 293
TscAI CASTG 1 cut(s) 129
TspGWI ACGGA 1 cut(s) 109
TspRI CASTG 1 cut(s) 129
VpaK11BI GGWCC 1 cut(s) 127
XagI CCTNNNNNAGG 1 cut(s) 284
XapI RAATTY 1 cut(s) 248
XceI RCATGY 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.