Rw1G001130

Belongs to the glutathione peroxidase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
1737916 .. 1740758
2843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G001130.1

Sequence Viewer

Length: 384 bp
ATGTCGTTTTGCACTGATCTTTATCAGGCTGGAGCTGAGTCGCCAGTGAGAGCTGAGTCGCCAGATATTCATGGAAATGATGTAAAGCTAAGTCAGAACAGCGGCAAGGTTCTTCTGATTGTGAATGAATTGAATATTTTGTATGAAAAGTATTGTTTTGAGATTCTAACATTTCCTTGCAACCAGTTTGCAGGACAAGACAATGAGGCTCCCCTTTACAAGGTCTTAAAATTGGAGAAAGGTGGTCTCTTTGGAAATGGCATCAAATGGAACTTTACCAAGTTTTTGGTAAACAAAGAAGGGAAGGTTGTGGAGAGATATGCTCCCGTGACAGCACCTCTGAAAATTGAGAAGGACATCCAAAATCTATTGGAATCTTCTTGA

Protein Analysis

127

Amino Acids

14.25

Weight (kDa)

5.43

Isoelectric Point (pI)

41.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 102
AfiI CCNNNNNNNGG 1 cut(s) 220
AgsI TTSAA 1 cut(s) 133
AluBI AGCT 3 cut(s) 35, 53, 88
AluI AGCT 3 cut(s) 35, 53, 88
Alw26I GTCTC 1 cut(s) 251
BcoDI GTCTC 1 cut(s) 251
BisI GCNGC 1 cut(s) 103
BlsI GCNGC 1 cut(s) 104
BmiI GGNNCC 1 cut(s) 210
BmsI GCATC 1 cut(s) 270
BplI GAGNNNNNCTC 2 cut(s) 307, 339
BpmI CTGGAG 1 cut(s) 51
BsaBI GATNNNNATC 1 cut(s) 21
BsaI GGTCTC 1 cut(s) 251
Bsc4I CCNNNNNNNGG 1 cut(s) 220
Bse1I ACTGG 2 cut(s) 44, 184
Bse8I GATNNNNATC 1 cut(s) 21
BseGI GGATG 1 cut(s) 357
BseJI GATNNNNATC 1 cut(s) 21
BseLI CCNNNNNNNGG 1 cut(s) 220
BseMII CTCAG 2 cut(s) 27, 45
BseNI ACTGG 2 cut(s) 44, 184
BslI CCNNNNNNNGG 1 cut(s) 220
BsmAI GTCTC 1 cut(s) 251
Bso31I GGTCTC 1 cut(s) 251
Bsp143I GATC 1 cut(s) 16
BspACI CCGC 1 cut(s) 102
BspCNI CTCAG 2 cut(s) 28, 46
BspLI GGNNCC 1 cut(s) 210
BspTNI GGTCTC 1 cut(s) 251
BsrI ACTGG 2 cut(s) 44, 184
BssMI GATC 1 cut(s) 16
BstDEI CTNAG 3 cut(s) 36, 54, 89
BstENI CCTNNNNNAGG 1 cut(s) 218
BstF5I GGATG 1 cut(s) 357
BstKTI GATC 1 cut(s) 19
BstMAI GTCTC 1 cut(s) 251
BstMBI GATC 1 cut(s) 16
BstXI CCANNNNNNTGG 1 cut(s) 286
BtsCI GGATG 1 cut(s) 357
BtsIMutI CAGTG 2 cut(s) 12, 51
CviAII CATG 1 cut(s) 71
CviJI RGCY 5 cut(s) 29, 35, 53, 88, 209
CviKI_1 RGCY 5 cut(s) 29, 35, 53, 88, 209
DdeI CTNAG 3 cut(s) 36, 54, 89
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
Eco31I GGTCTC 1 cut(s) 251
EcoNI CCTNNNNNAGG 1 cut(s) 218
FaeI CATG 1 cut(s) 74
FaiI YATR 3 cut(s) 72, 144, 321
FatI CATG 1 cut(s) 70
Fnu4HI GCNGC 1 cut(s) 103
FokI GGATG 1 cut(s) 344
Fsp4HI GCNGC 1 cut(s) 103
GluI GCNGC 1 cut(s) 103
GsuI CTGGAG 1 cut(s) 51
Hin1II CATG 1 cut(s) 74
HinfI GANTC 4 cut(s) 38, 56, 163, 374
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 3 cut(s) 96, 117, 342
Hpy188III TCNNGA 1 cut(s) 381
Hpy8I GTNNAC 1 cut(s) 292
HpyAV CCTTC 3 cut(s) 293, 298, 346
HpyCH4V TGCA 3 cut(s) 12, 180, 191
HpyF3I CTNAG 3 cut(s) 36, 54, 89
Hsp92II CATG 1 cut(s) 74
Kzo9I GATC 1 cut(s) 16
LmnI GCTCC 3 cut(s) 32, 214, 328
LpnPI CCDG 6 cut(s) 11, 15, 57, 75, 177, 197
LweI GCATC 1 cut(s) 270
MaeIII GTNAC 1 cut(s) 328
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 2 cut(s) 104, 369
MluCI AATT 3 cut(s) 128, 230, 345
MlyI GAGTC 2 cut(s) 47, 65
MnlI CCTC 2 cut(s) 199, 348
MseI TTAA 1 cut(s) 227
MslI CAYNNNNRTG 1 cut(s) 75
MspA1I CMGCKG 1 cut(s) 102
NdeII GATC 1 cut(s) 16
NlaIII CATG 1 cut(s) 74
NlaIV GGNNCC 1 cut(s) 210
NmuCI GTSAC 1 cut(s) 328
PfeI GAWTC 2 cut(s) 163, 374
PkrI GCNGC 1 cut(s) 104
PleI GAGTC 2 cut(s) 46, 64
PpsI GAGTC 2 cut(s) 46, 64
PspN4I GGNNCC 1 cut(s) 210
RseI CAYNNNNRTG 1 cut(s) 75
SaqAI TTAA 1 cut(s) 227
SatI GCNGC 1 cut(s) 103
Sau3AI GATC 1 cut(s) 16
SchI GAGTC 2 cut(s) 47, 65
SetI ASST 8 cut(s) 37, 55, 90, 111, 225, 244, 309, 340
SfaNI GCATC 1 cut(s) 270
SmiMI CAYNNNNRTG 1 cut(s) 75
Sse9I AATT 3 cut(s) 128, 230, 345
SsiI CCGC 1 cut(s) 102
SspI AATATT 1 cut(s) 136
TasI AATT 3 cut(s) 128, 230, 345
TauI GCSGC 1 cut(s) 105
TfiI GAWTC 2 cut(s) 163, 374
Tru1I TTAA 1 cut(s) 227
Tru9I TTAA 1 cut(s) 227
TscAI CASTG 2 cut(s) 19, 51
TseFI GTSAC 1 cut(s) 328
Tsp45I GTSAC 1 cut(s) 328
TspDTI ATGAA 3 cut(s) 59, 141, 159
TspRI CASTG 2 cut(s) 19, 51
XagI CCTNNNNNAGG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.