Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0003502

Physical Location & Seq

Genomic Coordinates Reverse (-)

41100660 .. 41104304

Gene Structure 3645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G028070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGCTGGAGTGGAGGCCAAAGATTGCATCAAGATCAAGGATATGGCATTCAAGGCCTCGAGAGCCTATAAAAACTGCAAGCTGTGTTCGAGGCTATGTGGCGACCACCGGAACGGGAACTGTTCGGACTCTGATATGTTGGCAAAGTGAGTTTGATATTCCTGGAAATGATGTAAAGCTAAGTGAGAACAGAGACAAGGTTCTTCTGATTGTGAAAGTTGAATTGAATATTTTGTATGAAAAGTACAAAAACAAAGGTTTTGAGATCCTAGCATTTCCTTGCAACCAGTTTGTAGGACAAGACCCAGGAAACAATGAGGAGATTCAGGAAGTTGCATGTACGAGGTTGAAAGTTGAATTTCCAATCTTTGACAAGAAAGGTGGTCTCTTTGGAAATGGCATCAAATGGAATTTTACCAAGTTTTTGGTAAACAAAGAAGGGAAGGTTGTGGAGAGATATGCTCCCGTGACAGCACCTCTCAAAATTGAGGTCAATATCCAGAATCTATTGGAATCTTCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

174

Amino Acids

19.92

Weight (kDa)

9.16

Isoelectric Point (pI)

43.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GSHPx	PF00255	52 - 126	5.5e-16	Glutathione peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31570 AT2G43350 AT2G43350
fragaria_vesca	FvH4_6g25700
malus_domestica	MD04G1034400.v1.1 MD14G1027000.v1.1
prunus_persica	Prupe.1G186500_v2.0.a1 Prupe.1G186500_v2.0.a1
pyrus_communis	pycom14g02570
rosa_chinensis	RchiOBHm_Chr4g0400261 RchiOBHm_Chr4g0408201
rosa_laevigata	RLG00000008663 RLG00000015280
rosa_multiflora	Rmu_sc0001793.1_g000052 Rmu_sc0005466.1_g000001 Rmu_sc0007120.1_g000003
rosa_roxburghii	Rroxscaffold_1G00024180 Rroxscaffold_1G00051140 Rroxscaffold_4G00316840 Rroxscaffold_5G00352710 Rroxscaffold_5G00361080
rosa_rugosa	Rorug04G0084100 Rorug04G0184800
rosa_samantha	Rh1CG015500 Rh2AG152400 Rh2BG157900 Rh3BG160500 Rh4AG149100 Rh4BG145700 Rh4CG156100 Rh4DG142100 Rh5BG054800
rosa_wichuraiana	Rw1G001130 Rw3G028070 Rw4G012170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	259
AcsI	RAATTY	2 cut(s)	356, 409
AfaI	GTAC	2 cut(s)	245, 340
AgsI	TTSAA	5 cut(s)	51, 221, 226, 349, 356
AjnI	CCWGG	2 cut(s)	160, 304
AluBI	AGCT	2 cut(s)	81, 178
AluI	AGCT	2 cut(s)	81, 178
Alw26I	GTCTC	2 cut(s)	186, 389
AlwI	GGATC	1 cut(s)	259
Ama87I	CYCGRG	1 cut(s)	57
AoxI	GGCC	2 cut(s)	14, 53
ApoI	RAATTY	2 cut(s)	356, 409
ArsI	GACNNNNNNTTYG	2 cut(s)	474, 506
AvaI	CYCGRG	1 cut(s)	57
BciT130I	CCWGG	2 cut(s)	162, 306
BcoDI	GTCTC	2 cut(s)	186, 389
BfaI	CTAG	1 cut(s)	269
Bme1390I	CCNGG	2 cut(s)	162, 306
BmeT110I	CYCGRG	1 cut(s)	57
BmrFI	CCNGG	2 cut(s)	162, 306
BmsI	GCATC	2 cut(s)	35, 408
BplI	GAGNNNNNCTC	2 cut(s)	445, 477
BpmI	CTGGAG	1 cut(s)	26
BsaI	GGTCTC	1 cut(s)	389
BsaJI	CCNNGG	1 cut(s)	304
BsaWI	WCCGGW	1 cut(s)	107
Bse1I	ACTGG	1 cut(s)	286
BseBI	CCWGG	2 cut(s)	162, 306
BseDI	CCNNGG	1 cut(s)	304
BseNI	ACTGG	1 cut(s)	286
BseRI	GAGGAG	1 cut(s)	332
BshFI	GGCC	2 cut(s)	16, 55
BsiHKCI	CYCGRG	1 cut(s)	57
BsiSI	CCGG	1 cut(s)	108
BsmAI	GTCTC	2 cut(s)	186, 389
BsmI	GAATGC	1 cut(s)	46
BsnI	GGCC	2 cut(s)	16, 55
Bso31I	GGTCTC	1 cut(s)	389
BsoBI	CYCGRG	1 cut(s)	57
Bsp143I	GATC	2 cut(s)	32, 264
BspANI	GGCC	2 cut(s)	16, 55
BspPI	GGATC	1 cut(s)	259
BspTNI	GGTCTC	1 cut(s)	389
BsrI	ACTGG	1 cut(s)	286
BssECI	CCNNGG	1 cut(s)	304
BssMI	GATC	2 cut(s)	32, 264
Bst2UI	CCWGG	2 cut(s)	162, 306
Bst4CI	ACNGT	1 cut(s)	121
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	1 cut(s)	179
BstKTI	GATC	2 cut(s)	35, 267
BstMAI	GTCTC	2 cut(s)	186, 389
BstMBI	GATC	2 cut(s)	32, 264
BstMWI	GCNNNNNNNGC	2 cut(s)	52, 61
BstNI	CCWGG	2 cut(s)	162, 306
BstNSI	RCATGY	1 cut(s)	339
BstSCI	CCNGG	2 cut(s)	160, 304
BstX2I	RGATCY	1 cut(s)	264
BstXI	CCANNNNNNTGG	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	264
BsuRI	GGCC	2 cut(s)	16, 55
Cac8I	GCNNGC	1 cut(s)	79
Csp6I	GTAC	2 cut(s)	244, 339
CspCI	CAANNNNNGTGG	2 cut(s)	361, 396
CviAII	CATG	1 cut(s)	336
CviJI	RGCY	6 cut(s)	16, 55, 64, 81, 93, 178
CviKI_1	RGCY	6 cut(s)	16, 55, 64, 81, 93, 178
CviQI	GTAC	2 cut(s)	244, 339
DdeI	CTNAG	1 cut(s)	179
DpnI	GATC	2 cut(s)	34, 266
DpnII	GATC	2 cut(s)	32, 264
Eco147I	AGGCCT	1 cut(s)	55
Eco31I	GGTCTC	1 cut(s)	389
Eco88I	CYCGRG	1 cut(s)	57
EcoRII	CCWGG	2 cut(s)	160, 304
FaeI	CATG	1 cut(s)	339
FaiI	YATR	7 cut(s)	43, 68, 96, 136, 237, 337, 459
FatI	CATG	1 cut(s)	335
FspBI	CTAG	1 cut(s)	269
GsuI	CTGGAG	1 cut(s)	26
HaeIII	GGCC	2 cut(s)	16, 55
HapII	CCGG	1 cut(s)	108
Hin1II	CATG	1 cut(s)	339
HinfI	GANTC	4 cut(s)	127, 322, 502, 512
HpaII	CCGG	1 cut(s)	108
Hpy166II	GTNNAC	1 cut(s)	430
Hpy188I	TCNGA	3 cut(s)	126, 132, 207
Hpy188III	TCNNGA	4 cut(s)	30, 59, 326, 499
Hpy8I	GTNNAC	1 cut(s)	430
HpyAV	CCTTC	2 cut(s)	431, 436
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4V	TGCA	4 cut(s)	26, 77, 282, 335
HpyF10VI	GCNNNNNNNGC	2 cut(s)	52, 61
HpyF3I	CTNAG	1 cut(s)	179
Hsp92II	CATG	1 cut(s)	339
Kzo9I	GATC	2 cut(s)	32, 264
LmnI	GCTCC	1 cut(s)	466
LpnPI	CCDG	8 cut(s)	121, 147, 174, 291, 299, 311, 318, 512
LweI	GCATC	2 cut(s)	35, 408
MaeI	CTAG	1 cut(s)	269
MaeIII	GTNAC	1 cut(s)	466
MalI	GATC	2 cut(s)	34, 266
MboI	GATC	2 cut(s)	32, 264
MboII	GAAGA	2 cut(s)	194, 507
MflI	RGATCY	1 cut(s)	264
MluCI	AATT	4 cut(s)	221, 356, 409, 483
MlyI	GAGTC	1 cut(s)	121
MnlI	CCTC	7 cut(s)	6, 66, 83, 310, 336, 481, 486
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	2 cut(s)	162, 306
Mva1269I	GAATGC	1 cut(s)	46
MvaI	CCWGG	2 cut(s)	162, 306
MwoI	GCNNNNNNNGC	2 cut(s)	52, 61
NdeII	GATC	2 cut(s)	32, 264
NlaIII	CATG	1 cut(s)	339
NmuCI	GTSAC	1 cut(s)	466
NspI	RCATGY	1 cut(s)	339
PaeR7I	CTCGAG	1 cut(s)	57
PceI	AGGCCT	1 cut(s)	55
PctI	GAATGC	1 cut(s)	46
PfeI	GAWTC	3 cut(s)	322, 502, 512
PfoI	TCCNGGA	1 cut(s)	160
PleI	GAGTC	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	121
Psp6I	CCWGG	2 cut(s)	160, 304
PspGI	CCWGG	2 cut(s)	160, 304
PsuI	RGATCY	1 cut(s)	264
RsaI	GTAC	2 cut(s)	245, 340
RsaNI	GTAC	2 cut(s)	244, 339
Sau3AI	GATC	2 cut(s)	32, 264
SchI	GAGTC	1 cut(s)	121
ScrFI	CCNGG	2 cut(s)	162, 306
SetI	ASST	9 cut(s)	83, 180, 201, 259, 347, 382, 447, 478, 492
SfaNI	GCATC	2 cut(s)	35, 408
Sfr274I	CTCGAG	1 cut(s)	57
SlaI	CTCGAG	1 cut(s)	57
SmlI	CTYRAG	1 cut(s)	57
SmoI	CTYRAG	1 cut(s)	57
Sse9I	AATT	4 cut(s)	221, 356, 409, 483
SseBI	AGGCCT	1 cut(s)	55
SspI	AATATT	1 cut(s)	229
SspMI	CTAG	1 cut(s)	269
StuI	AGGCCT	1 cut(s)	55
StyD4I	CCNGG	2 cut(s)	160, 304
TaaI	ACNGT	1 cut(s)	121
TaqI	TCGA	2 cut(s)	58, 88
TasI	AATT	4 cut(s)	221, 356, 409, 483
TatI	WGTACW	1 cut(s)	243
TfiI	GAWTC	3 cut(s)	322, 502, 512
TseFI	GTSAC	1 cut(s)	466
Tsp45I	GTSAC	1 cut(s)	466
TspDTI	ATGAA	1 cut(s)	252
XapI	RAATTY	2 cut(s)	356, 409
XceI	RCATGY	1 cut(s)	339
XhoI	CTCGAG	1 cut(s)	57
XspI	CTAG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.