FvH4_4g28790

) transport protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0010761
Physical Location & Seq
Reverse (-)
29290512 .. 29292323
1812 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g28790.t1

Sequence Viewer

Length: 1011 bp
ATGGCAACCAAACCCTACTTCATGCTCATTGCCATCTTCCTCCTCCTAACCTTCACGGCCCTCAATGTTTCGGCAGAGTCGACGTCCTGTCGGGAAGAGACCTCATCATGCCACAACAAAGCGGAGGCCTTGAAGATGAAGTACATCGCCATAGCTTCCATACTAGTGATGAGCATGATCGGGGTTTGCTTGCCAGTCTATTCTAACAAGGTGAAGGCTCTTCAGCCCGATACGAACCTATTTGTGATCGTCAAGGCGTTTGCATCCGGTGTCATACTCGCCACCGGGTACATGCATGTCTTACCTGATTCGTTTAACGACTTGACATCCCAGTGCTTGCCCCAAAAGCCGTGGAGGAACTTCCCCTTCACTACTTTTGTGGCAATGCTATCTGCTGTTATGTGCATGATGATCGATTCATTTTCAATGAGTCGTTATAGAAAATCTTTTATTCGAGCTACCCGTAGTGATGGCGAAGTGAGTCGAGAAATGAAAATTGAGGAGGGATTCATTACTAAAGAGGAACAACTGATGAGGCATCGTGTTGTGGCCAAGGTACTGGAAACAGGTATTGTAGTGCACTCAGTAGTGATTGGATTATCAATGGGGTCATCTCAAAATCCTTGCACAATAAGACCGCTCATTGCTGCAATTTGTTTCCATCAACTATTTGAAGGAATGGGACTAGGAGGCTGCATACTACAGGCTGAGTTTAAGAGCAAGATGAAGTTAATAATGGTGTTCTTCTTTTCATGCACAACACCATTTGGGATAGCATTAGGGATTGCGTTGAATACTGTATACAGTGACACCAGTCCGAAGTCTCTGATTGTGGAAGGTTTGCTAAATGCTTGTTCTGCAGGGCTGCTCAACTATATGGCATTGGTGGATCTGCTAGCAGCTGATTTTATGGGTTCTAAACTGCAAGGAAATATGAAGCTCCAAGTATGGTCGTACATTGCAGTTCTTTTAGGGGCAGGAGGCATGTCAGTAATGGCCATTTGGGCATAG

Protein Analysis

337

Amino Acids

36.83

Weight (kDa)

8.75

Isoelectric Point (pI)

46.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 45 - 333 4.3e-70 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010761)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04032
fragaria_vesca FvH4_4g28790 FvH4_4g28790 FvH4_5g31650
malus_domestica MD13G1054100.v1.1 MD15G1116800.v1.1 MD16G1052500.v1.1
prunus_persica Prupe.1G298100_v2.0.a1
pyrus_communis pycom13g04810 pycom15g10520
rosa_chinensis RchiOBHm_Chr4g0436921
rosa_laevigata RLG00000006486
rosa_multiflora Rmu_sc0001464.1_g000008
rosa_roxburghii Rroxscaffold_5G00377990
rosa_rugosa Rorug04G0297400
rosa_samantha Rh4AG351700 Rh4BG360700 Rh4CG375000 Rh4DG354900
rosa_wichuraiana Rw4G030780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 86
AccBSI CCGCTC 1 cut(s) 640
AccI GTMKAC 2 cut(s) 80, 801
AciI CCGC 2 cut(s) 122, 638
AclWI GGATC 1 cut(s) 897
AcoI YGGCCR 2 cut(s) 549, 996
AcuI CTGAAG 1 cut(s) 206
AcyI GRCGYC 1 cut(s) 83
AfaI GTAC 4 cut(s) 143, 290, 558, 956
AgsI TTSAA 4 cut(s) 133, 426, 674, 793
AhdI GACNNNNNGTC 1 cut(s) 87
AhlI ACTAGT 1 cut(s) 163
AjuI GAANNNNNNNTTGG 1 cut(s) 34
AluBI AGCT 4 cut(s) 155, 458, 902, 940
AluI AGCT 4 cut(s) 155, 458, 902, 940
Alw21I GWGCWC 1 cut(s) 582
Alw26I GTCTC 2 cut(s) 92, 828
Alw44I GTGCAC 1 cut(s) 578
AlwI GGATC 1 cut(s) 897
AoxI GGCC 4 cut(s) 57, 126, 549, 996
ApaLI GTGCAC 1 cut(s) 578
ApeKI GCWGC 4 cut(s) 647, 693, 865, 899
AspS9I GGNCC 1 cut(s) 58
AsuC2I CCSGG 1 cut(s) 286
AsuHPI GGTGA 1 cut(s) 223
AsuNHI GCTAGC 1 cut(s) 895
BaeGI GKGCMC 1 cut(s) 582
BalI TGGCCA 2 cut(s) 551, 998
BarI GAAGNNNNNNTAC 2 cut(s) 125, 157
Bbv12I GWGCWC 1 cut(s) 582
BbvI GCAGC 4 cut(s) 634, 680, 852, 911
BccI CCATC 3 cut(s) 41, 464, 669
BceAI ACGGC 2 cut(s) 72, 334
BcgI CGANNNNNNTGC 2 cut(s) 394, 428
BcnI CCSGG 1 cut(s) 286
BcoDI GTCTC 2 cut(s) 92, 828
BcuI ACTAGT 1 cut(s) 163
BfaI CTAG 3 cut(s) 164, 686, 896
BfmI CTRYAG 2 cut(s) 701, 858
BglI GCCNNNNNGGC 1 cut(s) 1004
BisI GCNGC 4 cut(s) 648, 694, 866, 900
BlsI GCNGC 4 cut(s) 649, 695, 867, 901
Bme1390I CCNGG 1 cut(s) 286
BmeRI GACNNNNNGTC 1 cut(s) 87
BmgT120I GGNCC 1 cut(s) 58
BmrFI CCNGG 1 cut(s) 286
BmrI ACTGGG 1 cut(s) 325
BmsI GCATC 2 cut(s) 272, 547
BmtI GCTAGC 1 cut(s) 899
BmuI ACTGGG 1 cut(s) 325
BoxI GACNNNNGTC 1 cut(s) 813
BpuMI CCSGG 1 cut(s) 286
Bsa29I ATCGAT 1 cut(s) 414
BsaHI GRCGYC 1 cut(s) 83
BsaI GGTCTC 1 cut(s) 92
BsaJI CCNNGG 2 cut(s) 350, 552
BsaWI WCCGGW 1 cut(s) 266
Bse1I ACTGG 4 cut(s) 194, 331, 564, 813
Bse3DI GCAATG 4 cut(s) 27, 390, 642, 957
BseCI ATCGAT 1 cut(s) 414
BseDI CCNNGG 2 cut(s) 350, 552
BseGI GGATG 2 cut(s) 263, 326
BseMI GCAATG 4 cut(s) 27, 390, 642, 957
BseMII CTCAG 2 cut(s) 597, 699
BseNI ACTGG 4 cut(s) 194, 331, 564, 813
BseRI GAGGAG 2 cut(s) 32, 515
BseSI GKGCMC 1 cut(s) 582
BseXI GCAGC 4 cut(s) 634, 680, 852, 911
BshFI GGCC 4 cut(s) 59, 128, 551, 998
BshVI ATCGAT 1 cut(s) 414
BsiHKAI GWGCWC 1 cut(s) 582
BsiSI CCGG 2 cut(s) 267, 285
BslFI GGGAC 1 cut(s) 696
BsmAI GTCTC 2 cut(s) 92, 828
BsmFI GGGAC 1 cut(s) 696
BsnI GGCC 4 cut(s) 59, 128, 551, 998
Bso31I GGTCTC 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 582
Bsp143I GATC 4 cut(s) 177, 246, 411, 889
BspACI CCGC 2 cut(s) 122, 638
BspANI GGCC 4 cut(s) 59, 128, 551, 998
BspCNI CTCAG 2 cut(s) 596, 700
BspDI ATCGAT 1 cut(s) 414
BspMAI CTGCAG 1 cut(s) 862
BspOI GCTAGC 1 cut(s) 899
BspPI GGATC 1 cut(s) 897
BspQI GCTCTTC 1 cut(s) 225
BspTNI GGTCTC 1 cut(s) 92
BsrBI CCGCTC 1 cut(s) 640
BsrDI GCAATG 4 cut(s) 27, 390, 642, 957
BsrI ACTGG 4 cut(s) 194, 331, 564, 813
BssECI CCNNGG 2 cut(s) 350, 552
BssMI GATC 4 cut(s) 177, 246, 411, 889
BssNAI GTATAC 1 cut(s) 802
BssNI GRCGYC 1 cut(s) 83
BssT1I CCWWGG 1 cut(s) 552
Bst1107I GTATAC 1 cut(s) 802
Bst4CI ACNGT 2 cut(s) 799, 806
Bst6I CTCTTC 2 cut(s) 90, 225
BstACI GRCGYC 1 cut(s) 83
BstC8I GCNNGC 3 cut(s) 191, 338, 897
BstDEI CTNAG 2 cut(s) 583, 708
BstDSI CCRYGG 1 cut(s) 350
BstF5I GGATG 2 cut(s) 263, 326
BstKTI GATC 4 cut(s) 180, 249, 414, 892
BstMAI GTCTC 2 cut(s) 92, 828
BstMBI GATC 4 cut(s) 177, 246, 411, 889
BstMWI GCNNNNNNNGC 3 cut(s) 346, 857, 1004
BstNSI RCATGY 3 cut(s) 295, 299, 988
BstPAI GACNNNNGTC 1 cut(s) 813
BstSCI CCNGG 1 cut(s) 284
BstSFI CTRYAG 2 cut(s) 701, 858
BstSLI GKGCMC 1 cut(s) 582
BstV1I GCAGC 4 cut(s) 634, 680, 852, 911
BstX2I RGATCY 1 cut(s) 889
BstXI CCANNNNNNTGG 1 cut(s) 559
BstYI RGATCY 1 cut(s) 889
BstZ17I GTATAC 1 cut(s) 802
Bsu15I ATCGAT 1 cut(s) 414
BsuRI GGCC 4 cut(s) 59, 128, 551, 998
BsuTUI ATCGAT 1 cut(s) 414
BtgI CCRYGG 1 cut(s) 350
BtgZI GCGATG 1 cut(s) 130
BtsCI GGATG 2 cut(s) 263, 326
BtsIMutI CAGTG 2 cut(s) 338, 811
Cac8I GCNNGC 3 cut(s) 191, 338, 897
Cfr13I GGNCC 1 cut(s) 58
ClaI ATCGAT 1 cut(s) 414
Csp6I GTAC 4 cut(s) 142, 289, 557, 955
CspCI CAANNNNNGTGG 2 cut(s) 332, 367
CviAII CATG 8 cut(s) 22, 108, 175, 292, 296, 406, 753, 985
CviQI GTAC 4 cut(s) 142, 289, 557, 955
DdeI CTNAG 2 cut(s) 583, 708
DpnI GATC 4 cut(s) 179, 248, 413, 891
DpnII GATC 4 cut(s) 177, 246, 411, 889
DriI GACNNNNNGTC 1 cut(s) 87
EaeI YGGCCR 2 cut(s) 549, 996
Eam1104I CTCTTC 2 cut(s) 90, 225
Eam1105I GACNNNNNGTC 1 cut(s) 87
EarI CTCTTC 2 cut(s) 90, 225
Eco130I CCWWGG 1 cut(s) 552
Eco147I AGGCCT 1 cut(s) 128
Eco31I GGTCTC 1 cut(s) 92
Eco57I CTGAAG 1 cut(s) 206
EcoT14I CCWWGG 1 cut(s) 552
EcoT22I ATGCAT 1 cut(s) 297
ErhI CCWWGG 1 cut(s) 552
FaeI CATG 8 cut(s) 25, 111, 178, 295, 299, 409, 756, 988
FaqI GGGAC 1 cut(s) 696
FatI CATG 8 cut(s) 21, 107, 174, 291, 295, 405, 752, 984
FblI GTMKAC 2 cut(s) 80, 801
Fnu4HI GCNGC 4 cut(s) 648, 694, 866, 900
FokI GGATG 2 cut(s) 250, 313
Fsp4HI GCNGC 4 cut(s) 648, 694, 866, 900
FspBI CTAG 3 cut(s) 164, 686, 896
GluI GCNGC 4 cut(s) 648, 694, 866, 900
HaeIII GGCC 4 cut(s) 59, 128, 551, 998
HapII CCGG 2 cut(s) 267, 285
Hin1I GRCGYC 1 cut(s) 83
Hin1II CATG 8 cut(s) 25, 111, 178, 295, 299, 409, 756, 988
HincII GTYRAC 1 cut(s) 81
HindII GTYRAC 1 cut(s) 81
HinfI GANTC 6 cut(s) 77, 308, 416, 430, 481, 507
HpaII CCGG 2 cut(s) 267, 285
HphI GGTGA 1 cut(s) 223
Hpy166II GTNNAC 3 cut(s) 81, 580, 802
Hpy188I TCNGA 2 cut(s) 819, 828
Hpy188III TCNNGA 2 cut(s) 92, 485
Hpy8I GTNNAC 3 cut(s) 81, 580, 802
Hpy99I CGWCG 1 cut(s) 85
HpyAV CCTTC 5 cut(s) 61, 208, 376, 668, 830
HpyCH4III ACNGT 2 cut(s) 799, 806
HpyCH4IV ACGT 1 cut(s) 83
HpyF10VI GCNNNNNNNGC 3 cut(s) 346, 857, 1004
HpyF3I CTNAG 2 cut(s) 583, 708
HpySE526I ACGT 1 cut(s) 83
Hsp92I GRCGYC 1 cut(s) 83
Hsp92II CATG 8 cut(s) 25, 111, 178, 295, 299, 409, 756, 988
Kzo9I GATC 4 cut(s) 177, 246, 411, 889
LguI GCTCTTC 1 cut(s) 225
LmnI GCTCC 1 cut(s) 945
Lsp1109I GCAGC 4 cut(s) 634, 680, 852, 911
LweI GCATC 2 cut(s) 272, 547
MaeI CTAG 3 cut(s) 164, 686, 896
MaeII ACGT 1 cut(s) 83
MaeIII GTNAC 1 cut(s) 806
MalI GATC 4 cut(s) 179, 248, 413, 891
MbiI CCGCTC 1 cut(s) 640
MboI GATC 4 cut(s) 177, 246, 411, 889
MboII GAAGA 5 cut(s) 28, 107, 145, 212, 736
MflI RGATCY 1 cut(s) 889
MhlI GDGCHC 1 cut(s) 582
MlsI TGGCCA 2 cut(s) 551, 998
MluCI AATT 2 cut(s) 495, 651
MluNI TGGCCA 2 cut(s) 551, 998
MlyI GAGTC 3 cut(s) 86, 439, 490
Mox20I TGGCCA 2 cut(s) 551, 998
Mph1103I ATGCAT 1 cut(s) 297
MscI TGGCCA 2 cut(s) 551, 998
MseI TTAA 3 cut(s) 315, 714, 731
MslI CAYNNNNRTG 2 cut(s) 164, 331
Msp20I TGGCCA 2 cut(s) 551, 998
MspA1I CMGCKG 1 cut(s) 902
MspI CCGG 2 cut(s) 267, 285
MspR9I CCNGG 1 cut(s) 286
MwoI GCNNNNNNNGC 3 cut(s) 346, 857, 1004
NciI CCSGG 1 cut(s) 286
NdeII GATC 4 cut(s) 177, 246, 411, 889
NheI GCTAGC 1 cut(s) 895
NlaIII CATG 8 cut(s) 25, 111, 178, 295, 299, 409, 756, 988
NmuCI GTSAC 1 cut(s) 806
NsiI ATGCAT 1 cut(s) 297
NspI RCATGY 3 cut(s) 295, 299, 988
PceI AGGCCT 1 cut(s) 128
PciSI GCTCTTC 1 cut(s) 225
PcsI WCGNNNNNNNCGW 2 cut(s) 77, 460
PfeI GAWTC 3 cut(s) 308, 416, 507
PkrI GCNGC 4 cut(s) 649, 695, 867, 901
PleI GAGTC 3 cut(s) 85, 438, 489
PpsI GAGTC 3 cut(s) 85, 438, 489
PshAI GACNNNNGTC 1 cut(s) 813
PspPI GGNCC 1 cut(s) 58
PstI CTGCAG 1 cut(s) 862
PsuI RGATCY 1 cut(s) 889
PvuII CAGCTG 1 cut(s) 902
RsaI GTAC 4 cut(s) 143, 290, 558, 956
RsaNI GTAC 4 cut(s) 142, 289, 557, 955
RseI CAYNNNNRTG 2 cut(s) 164, 331
SalI GTCGAC 1 cut(s) 79
SapI GCTCTTC 1 cut(s) 225
SaqAI TTAA 3 cut(s) 315, 714, 731
SatI GCNGC 4 cut(s) 648, 694, 866, 900
Sau3AI GATC 4 cut(s) 177, 246, 411, 889
Sau96I GGNCC 1 cut(s) 58
SchI GAGTC 3 cut(s) 86, 439, 490
ScrFI CCNGG 1 cut(s) 286
SduI GDGCHC 1 cut(s) 582
SfaNI GCATC 2 cut(s) 272, 547
SfcI CTRYAG 2 cut(s) 701, 858
SmiMI CAYNNNNRTG 2 cut(s) 164, 331
SpeI ACTAGT 1 cut(s) 163
Sse9I AATT 2 cut(s) 495, 651
SseBI AGGCCT 1 cut(s) 128
SsiI CCGC 2 cut(s) 122, 638
SspMI CTAG 3 cut(s) 164, 686, 896
StuI AGGCCT 1 cut(s) 128
StyD4I CCNGG 1 cut(s) 284
StyI CCWWGG 1 cut(s) 552
TaaI ACNGT 2 cut(s) 799, 806
TaiI ACGT 1 cut(s) 86
TaqI TCGA 4 cut(s) 80, 414, 454, 484
TasI AATT 2 cut(s) 495, 651
TatI WGTACW 1 cut(s) 141
TfiI GAWTC 3 cut(s) 308, 416, 507
Tru1I TTAA 3 cut(s) 315, 714, 731
Tru9I TTAA 3 cut(s) 315, 714, 731
TscAI CASTG 2 cut(s) 338, 811
TseFI GTSAC 1 cut(s) 806
TseI GCWGC 4 cut(s) 647, 693, 865, 899
Tsp45I GTSAC 1 cut(s) 806
TspDTI ATGAA 8 cut(s) 10, 152, 408, 499, 506, 740, 741, 950
TspRI CASTG 2 cut(s) 338, 811
VneI GTGCAC 1 cut(s) 578
XceI RCATGY 3 cut(s) 295, 299, 988
XmiI GTMKAC 2 cut(s) 80, 801
XspI CTAG 3 cut(s) 164, 686, 896
ZraI GACGTC 1 cut(s) 84
Zsp2I ATGCAT 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.