Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0010761

Physical Location & Seq

Genomic Coordinates Reverse (-)

3203742 .. 3204355

Gene Structure 614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g04810.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCTGCCAAACTCTACGCCCTCGCCGTCATCCTCCTCCTCATCAGCATTGCCGGCAATGCAGCTGCCGAGGAACCACAGCAATGTGGGTCCAAATCCAAAGGACAATGCCACGACAAATCCAAGGCCTTGATACTGAAGACCATTGCTTTATTTGCCATTTTGGTTTCGGCTTTCCAACCCGGCAAAAACATGTTCGTCATTGTCAAAGCGTTCGCCTCCGGTGTCATACTTGCCACGGGGTACATGCACGTTTTGCCCGACTCGTTCGATTGCTTGACATCCGAGTGCTTGCCGGAACATCCGTGGAGGAAGTTTCCATTCACAACGTTCGTGGCAATGCTTTCAGCCGTTCTTACTCTCATGGTGGACTCGTTTTCAATGAGTCACTATAGGAAATATTTAGTTCGCGGTGCAGCTCGCGGCGAAGATGACGAGAATGCCAAAAATAGCTCTTCTCAAATAGAACCTTTTGGGTATGGTCATGACATTAAGACTGAAGATGGACTCGACGATAAGGATTCACAGTTGCTGAGATATCGTGTTGTGGCACAGGTATTAATCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0015691 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

190

Amino Acids

20.72

Weight (kDa)

6.95

Isoelectric Point (pI)

48.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04032
fragaria_vesca	FvH4_4g28790 FvH4_4g28790 FvH4_5g31650
malus_domestica	MD13G1054100.v1.1 MD15G1116800.v1.1 MD16G1052500.v1.1
prunus_persica	Prupe.1G298100_v2.0.a1
pyrus_communis	pycom13g04810 pycom15g10520
rosa_chinensis	RchiOBHm_Chr4g0436921
rosa_laevigata	RLG00000006486
rosa_multiflora	Rmu_sc0001464.1_g000008
rosa_roxburghii	Rroxscaffold_5G00377990
rosa_rugosa	Rorug04G0297400
rosa_samantha	Rh4AG351700 Rh4BG360700 Rh4CG375000 Rh4DG354900
rosa_wichuraiana	Rw4G030780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	411, 423
AciI	CCGC	2 cut(s)	411, 423
AclI	AACGTT	1 cut(s)	329
AcuI	CTGAAG	2 cut(s)	158, 519
AfaI	GTAC	1 cut(s)	245
AflIII	ACRYGT	1 cut(s)	192
AgsI	TTSAA	1 cut(s)	381
AluBI	AGCT	3 cut(s)	65, 419, 453
AluI	AGCT	3 cut(s)	65, 419, 453
AlwNI	CAGNNNCTG	1 cut(s)	532
AoxI	GGCC	1 cut(s)	126
ApeKI	GCWGC	4 cut(s)	5, 62, 65, 416
AseI	ATTAAT	1 cut(s)	560
AspS9I	GGNCC	1 cut(s)	90
AsuC2I	CCSGG	1 cut(s)	183
AvaII	GGWCC	1 cut(s)	90
BbsI	GAAGAC	1 cut(s)	146
BbvI	GCAGC	3 cut(s)	52, 74, 428
BccI	CCATC	1 cut(s)	497
BceAI	ACGGC	2 cut(s)	11, 335
BcnI	CCSGG	1 cut(s)	183
BfmI	CTRYAG	1 cut(s)	391
BisI	GCNGC	5 cut(s)	6, 63, 66, 417, 424
BlsI	GCNGC	5 cut(s)	7, 64, 67, 418, 425
Bme1390I	CCNGG	1 cut(s)	183
Bme18I	GGWCC	1 cut(s)	90
BmgT120I	GGNCC	1 cut(s)	90
BmiI	GGNNCC	2 cut(s)	75, 91
BmrFI	CCNGG	1 cut(s)	183
BpiI	GAAGAC	1 cut(s)	146
BpuMI	CCSGG	1 cut(s)	183
BsaJI	CCNNGG	4 cut(s)	69, 123, 237, 305
BsaWI	WCCGGW	1 cut(s)	221
Bse118I	RCCGGY	1 cut(s)	53
Bse3DI	GCAATG	5 cut(s)	48, 64, 89, 144, 345
BseDI	CCNNGG	4 cut(s)	69, 123, 237, 305
BseGI	GGATG	3 cut(s)	30, 281, 301
BseMI	GCAATG	5 cut(s)	48, 64, 89, 144, 345
BseMII	CTCAG	1 cut(s)	524
BseRI	GAGGAG	2 cut(s)	26, 29
BseXI	GCAGC	3 cut(s)	52, 74, 428
BsgI	GTGCAG	1 cut(s)	435
Bsh1236I	CGCG	2 cut(s)	411, 423
BshFI	GGCC	1 cut(s)	128
BsiSI	CCGG	4 cut(s)	54, 183, 222, 296
BsmI	GAATGC	1 cut(s)	445
BsnI	GGCC	1 cut(s)	128
BspACI	CCGC	2 cut(s)	411, 423
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	1 cut(s)	525
BspFNI	CGCG	2 cut(s)	411, 423
BspHI	TCATGA	1 cut(s)	484
BspLI	GGNNCC	2 cut(s)	75, 91
BspQI	GCTCTTC	1 cut(s)	460
BsrDI	GCAATG	5 cut(s)	48, 64, 89, 144, 345
BsrFI	RCCGGY	1 cut(s)	53
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	4 cut(s)	69, 123, 237, 305
BssT1I	CCWWGG	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	528
Bst6I	CTCTTC	1 cut(s)	460
BstAPI	GCANNNNNTGC	1 cut(s)	256
BstC8I	GCNNGC	3 cut(s)	55, 293, 421
BstDEI	CTNAG	1 cut(s)	533
BstDSI	CCRYGG	2 cut(s)	237, 305
BstF5I	GGATG	3 cut(s)	30, 281, 301
BstFNI	CGCG	2 cut(s)	411, 423
BstMWI	GCNNNNNNNGC	4 cut(s)	54, 59, 155, 256
BstNSI	RCATGY	2 cut(s)	196, 250
BstSCI	CCNGG	1 cut(s)	181
BstSFI	CTRYAG	1 cut(s)	391
BstUI	CGCG	2 cut(s)	411, 423
BstV1I	GCAGC	3 cut(s)	52, 74, 428
BstV2I	GAAGAC	1 cut(s)	146
BsuRI	GGCC	1 cut(s)	128
BtgI	CCRYGG	2 cut(s)	237, 305
BtsCI	GGATG	3 cut(s)	30, 281, 301
Cac8I	GCNNGC	3 cut(s)	55, 293, 421
CaiI	CAGNNNCTG	1 cut(s)	532
CciI	TCATGA	1 cut(s)	484
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	90
Csp6I	GTAC	1 cut(s)	244
CspCI	CAANNNNNGTGG	2 cut(s)	315, 350
CviAII	CATG	4 cut(s)	193, 247, 364, 485
CviJI	RGCY	7 cut(s)	5, 65, 128, 173, 350, 419, 453
CviKI_1	RGCY	7 cut(s)	5, 65, 128, 173, 350, 419, 453
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	1 cut(s)	533
Eam1104I	CTCTTC	1 cut(s)	460
EarI	CTCTTC	1 cut(s)	460
Eco130I	CCWWGG	1 cut(s)	123
Eco147I	AGGCCT	1 cut(s)	128
Eco32I	GATATC	1 cut(s)	539
Eco47I	GGWCC	1 cut(s)	90
Eco57I	CTGAAG	2 cut(s)	158, 519
EcoRV	GATATC	1 cut(s)	539
EcoT14I	CCWWGG	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	4 cut(s)	196, 250, 367, 488
FaiI	YATR	8 cut(s)	194, 230, 248, 365, 393, 480, 486, 568
FatI	CATG	4 cut(s)	192, 246, 363, 484
Fnu4HI	GCNGC	5 cut(s)	6, 63, 66, 417, 424
FokI	GGATG	3 cut(s)	17, 268, 288
Fsp4HI	GCNGC	5 cut(s)	6, 63, 66, 417, 424
GluI	GCNGC	5 cut(s)	6, 63, 66, 417, 424
HaeIII	GGCC	1 cut(s)	128
HapII	CCGG	4 cut(s)	54, 183, 222, 296
Hin1II	CATG	4 cut(s)	196, 250, 367, 488
HinfI	GANTC	5 cut(s)	263, 371, 385, 507, 521
HpaII	CCGG	4 cut(s)	54, 183, 222, 296
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	1 cut(s)	286
Hpy188III	TCNNGA	1 cut(s)	485
Hpy8I	GTNNAC	1 cut(s)	370
Hpy99I	CGWCG	1 cut(s)	515
HpyCH4III	ACNGT	1 cut(s)	528
HpyCH4IV	ACGT	2 cut(s)	252, 329
HpyCH4V	TGCA	3 cut(s)	62, 250, 416
HpyF10VI	GCNNNNNNNGC	4 cut(s)	54, 59, 155, 256
HpyF3I	CTNAG	1 cut(s)	533
HpySE526I	ACGT	2 cut(s)	252, 329
Hsp92II	CATG	4 cut(s)	196, 250, 367, 488
KroI	GCCGGC	1 cut(s)	53
KroNI	GCCGGC	1 cut(s)	55
LguI	GCTCTTC	1 cut(s)	460
LpnPI	CCDG	5 cut(s)	67, 196, 235, 309, 539
Lsp1109I	GCAGC	3 cut(s)	52, 74, 428
MaeII	ACGT	2 cut(s)	252, 329
MaeIII	GTNAC	1 cut(s)	386
MboII	GAAGA	4 cut(s)	151, 440, 447, 512
MlyI	GAGTC	4 cut(s)	257, 365, 394, 501
MmeI	TCCRAC	1 cut(s)	202
MnlI	CCTC	7 cut(s)	32, 44, 47, 50, 64, 229, 303
MroNI	GCCGGC	1 cut(s)	53
MseI	TTAA	2 cut(s)	492, 560
MslI	CAYNNNNRTG	2 cut(s)	82, 286
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	4 cut(s)	54, 183, 222, 296
MspR9I	CCNGG	1 cut(s)	183
Mva1269I	GAATGC	1 cut(s)	445
MvnI	CGCG	2 cut(s)	411, 423
MwoI	GCNNNNNNNGC	4 cut(s)	54, 59, 155, 256
NaeI	GCCGGC	1 cut(s)	55
NciI	CCSGG	1 cut(s)	183
NgoMIV	GCCGGC	1 cut(s)	53
NlaIII	CATG	4 cut(s)	196, 250, 367, 488
NlaIV	GGNNCC	2 cut(s)	75, 91
NmeAIII	GCCGAG	1 cut(s)	94
NmuCI	GTSAC	1 cut(s)	386
NspI	RCATGY	2 cut(s)	196, 250
PagI	TCATGA	1 cut(s)	484
PceI	AGGCCT	1 cut(s)	128
PciI	ACATGT	1 cut(s)	192
PciSI	GCTCTTC	1 cut(s)	460
PcsI	WCGNNNNNNNCGW	2 cut(s)	24, 258
PctI	GAATGC	1 cut(s)	445
PdiI	GCCGGC	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	521
PkrI	GCNGC	5 cut(s)	7, 64, 67, 418, 425
PleI	GAGTC	4 cut(s)	257, 365, 393, 501
PpsI	GAGTC	4 cut(s)	257, 365, 393, 501
PscI	ACATGT	1 cut(s)	192
PshBI	ATTAAT	1 cut(s)	560
Psp1406I	AACGTT	1 cut(s)	329
PspN4I	GGNNCC	2 cut(s)	75, 91
PspPI	GGNCC	1 cut(s)	90
PstNI	CAGNNNCTG	1 cut(s)	532
PvuII	CAGCTG	1 cut(s)	65
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
RseI	CAYNNNNRTG	2 cut(s)	82, 286
SapI	GCTCTTC	1 cut(s)	460
SaqAI	TTAA	2 cut(s)	492, 560
SatI	GCNGC	5 cut(s)	6, 63, 66, 417, 424
Sau96I	GGNCC	1 cut(s)	90
SchI	GAGTC	4 cut(s)	257, 365, 394, 501
ScrFI	CCNGG	1 cut(s)	183
SetI	ASST	7 cut(s)	67, 255, 332, 421, 455, 472, 558
SfcI	CTRYAG	1 cut(s)	391
SinI	GGWCC	1 cut(s)	90
SmiMI	CAYNNNNRTG	2 cut(s)	82, 286
SseBI	AGGCCT	1 cut(s)	128
SsiI	CCGC	2 cut(s)	411, 423
SspI	AATATT	1 cut(s)	401
StuI	AGGCCT	1 cut(s)	128
StyD4I	CCNGG	1 cut(s)	181
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	1 cut(s)	528
TaiI	ACGT	2 cut(s)	255, 332
TaqI	TCGA	2 cut(s)	270, 510
TauI	GCSGC	1 cut(s)	426
TfiI	GAWTC	1 cut(s)	521
Tru1I	TTAA	2 cut(s)	492, 560
Tru9I	TTAA	2 cut(s)	492, 560
TseFI	GTSAC	1 cut(s)	386
TseI	GCWGC	4 cut(s)	5, 62, 65, 416
Tsp45I	GTSAC	1 cut(s)	386
TspGWI	ACGGA	1 cut(s)	294
VpaK11BI	GGWCC	1 cut(s)	90
VspI	ATTAAT	1 cut(s)	560
XceI	RCATGY	2 cut(s)	196, 250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.