Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0010761

Physical Location & Seq

Genomic Coordinates Reverse (-)

57514009 .. 57515254

Gene Structure 1246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G030780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGCAACCAAACACTTCTTGCTTGCCATCTTTGTCCTCCTCCTAAGCTTTGGGCCCCTCAATGTTTCGGCAGTTTCGCCACAATGTGGGGAAGAGATCACACGGTGCCACAACAAAGAGGAGGCCTTGAAGATGAAGATCATTGCCATAGCTGCCATACTAGTCATGAGCATGATCGGGGTTTGCTTGCCATTATTTTCGCACATGGTGCCGGCTCTTCAGCCCGACAAGAACCTGTTTGTGGTGGTCAAGGCGTTTGCATCCGGTGTCATACTCGCGACCGGGTACATGCACGTGTTACCCGATTCGTTTGAAGACTTGACATCCGAGTGCTTGCCTGAAAGGCCGTGGAGGAAATTTCCCTTCACGACGTTTGTGGCAATGCTCTCGGCTATTGTGTGTATGATGGTGGATTCAATTTCGATGAGTCGTTATAAAAAATCTTTTCTTCGAGCTACTGGTAATGGCGACTTGCGCAACAGTACTGCCAAAATTGAGAGCGCCGAGTCAGCGGATATTGGACATGGTCGTGAAATGAAAATTGAGGAGGGGATCAATACTAAGGAGGAACAATTGATGAAGCATCGTATTGTGGCAAAGGTATTGGAAACAGGTATTGTAGTGCACTCAGTAGTGATTGGATTGTCAATGGGGTCATCTGAAAACCCTTGCACAATTAGACCGCTCATTGCTGCAATTTGTTTCCATCAACTATTTGAAGGAATGGGTCTAGGAGGGTGCATACTTCAGGCTGAATTTGGAAGCAAGATGAAAGTAATCATGATGTTCTTCTTTTCATGCACAACACCATTTGGGATAGTGTTAGGGATTGCGTTGTCTAATGTATACGAAGACAACAGTCCGAAGTCTCTGATTGTGGAAGGGCTGCTAAATGCTTGTTCTTCAGGGCTACTCAATTATATGGCACTGGTGGATCTGCTAGCCGCTGAATTTATGGGTCCTAAACTGCAATCAAATATAAAGCTCCAAGTATGGTCGTACATTGCAGTTCTTTTAGGAGCAGGAGGCATGTCAGTGATGGCCATTTGGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0015691 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

351

Amino Acids

38.18

Weight (kDa)

6.71

Isoelectric Point (pI)

52.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	44 - 348	2.5e-75	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04032
fragaria_vesca	FvH4_4g28790 FvH4_4g28790 FvH4_5g31650
malus_domestica	MD13G1054100.v1.1 MD15G1116800.v1.1 MD16G1052500.v1.1
prunus_persica	Prupe.1G298100_v2.0.a1
pyrus_communis	pycom13g04810 pycom15g10520
rosa_chinensis	RchiOBHm_Chr4g0436921
rosa_laevigata	RLG00000006486
rosa_multiflora	Rmu_sc0001464.1_g000008
rosa_roxburghii	Rroxscaffold_5G00377990
rosa_rugosa	Rorug04G0297400
rosa_samantha	Rh4AG351700 Rh4BG360700 Rh4CG375000 Rh4DG354900
rosa_wichuraiana	Rw4G030780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	435
Acc16I	TGCGCA	1 cut(s)	476
AccB1I	GGYRCC	2 cut(s)	105, 208
AccB7I	CCANNNNNTGG	1 cut(s)	86
AccBSI	CCGCTC	1 cut(s)	685
AccI	GTMKAC	1 cut(s)	846
AccII	CGCG	1 cut(s)	278
AciI	CCGC	3 cut(s)	512, 683, 945
AclWI	GGATC	2 cut(s)	560, 942
AcoI	YGGCCR	1 cut(s)	1041
AcsI	RAATTY	3 cut(s)	356, 755, 950
AcuI	CTGAAG	3 cut(s)	203, 731, 888
AcvI	CACGTG	1 cut(s)	295
AdeI	CACNNNGTG	3 cut(s)	86, 105, 208
AfaI	GTAC	3 cut(s)	287, 484, 1001
AfiI	CCNNNNNNNGG	2 cut(s)	86, 241
AflIII	ACRYGT	1 cut(s)	294
AgsI	TTSAA	4 cut(s)	130, 314, 417, 719
AhlI	ACTAGT	1 cut(s)	160
AluBI	AGCT	4 cut(s)	48, 152, 455, 985
AluI	AGCT	4 cut(s)	48, 152, 455, 985
Alw21I	GWGCWC	1 cut(s)	627
Alw26I	GTCTC	1 cut(s)	873
Alw44I	GTGCAC	1 cut(s)	623
AlwI	GGATC	2 cut(s)	560, 942
AoxI	GGCC	4 cut(s)	53, 123, 344, 1041
ApaI	GGGCCC	1 cut(s)	57
ApaLI	GTGCAC	1 cut(s)	623
ApeKI	GCWGC	3 cut(s)	152, 692, 886
ApoI	RAATTY	3 cut(s)	356, 755, 950
AspLEI	GCGC	2 cut(s)	477, 503
AspS9I	GGNCC	3 cut(s)	53, 54, 959
AsuC2I	CCSGG	1 cut(s)	283
AsuNHI	GCTAGC	1 cut(s)	940
AvaII	GGWCC	1 cut(s)	959
BaeGI	GKGCMC	2 cut(s)	57, 627
BalI	TGGCCA	1 cut(s)	1043
BanI	GGYRCC	2 cut(s)	105, 208
BanII	GRGCYC	1 cut(s)	57
BbrPI	CACGTG	1 cut(s)	295
BbsI	GAAGAC	2 cut(s)	321, 858
Bbv12I	GWGCWC	1 cut(s)	627
BbvI	GCAGC	3 cut(s)	139, 679, 873
BccI	CCATC	4 cut(s)	35, 400, 714, 1033
BceAI	ACGGC	1 cut(s)	331
BcgI	CGANNNNNNTGC	2 cut(s)	369, 403
BcnI	CCSGG	1 cut(s)	283
BcoDI	GTCTC	1 cut(s)	873
BcuI	ACTAGT	1 cut(s)	160
BfaI	CTAG	3 cut(s)	161, 731, 941
BfoI	RGCGCY	1 cut(s)	504
BglI	GCCNNNNNGGC	2 cut(s)	343, 1049
BisI	GCNGC	4 cut(s)	153, 693, 887, 945
BlsI	GCNGC	4 cut(s)	154, 694, 888, 946
BmcAI	AGTACT	1 cut(s)	484
Bme1390I	CCNGG	1 cut(s)	283
Bme18I	GGWCC	1 cut(s)	959
BmgT120I	GGNCC	3 cut(s)	53, 54, 959
BmiI	GGNNCC	5 cut(s)	55, 56, 107, 210, 960
BmrFI	CCNGG	1 cut(s)	283
BmsI	GCATC	2 cut(s)	269, 592
BmtI	GCTAGC	1 cut(s)	944
BoxI	GACNNNNGTC	1 cut(s)	858
BpiI	GAAGAC	2 cut(s)	321, 858
Bpu10I	CCTNAGC	1 cut(s)	44
BpuMI	CCSGG	1 cut(s)	283
BsaAI	YACGTR	1 cut(s)	295
BsaBI	GATNNNNATC	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	347
BsaWI	WCCGGW	1 cut(s)	263
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 241
Bse118I	RCCGGY	1 cut(s)	211
Bse1I	ACTGG	2 cut(s)	463, 933
Bse3DI	GCAATG	4 cut(s)	141, 387, 687, 1002
Bse8I	GATNNNNATC	1 cut(s)	137
BseDI	CCNNGG	1 cut(s)	347
BseGI	GGATG	2 cut(s)	260, 323
BseJI	GATNNNNATC	1 cut(s)	137
BseLI	CCNNNNNNNGG	2 cut(s)	86, 241
BseMI	GCAATG	4 cut(s)	141, 387, 687, 1002
BseMII	CTCAG	1 cut(s)	642
BseNI	ACTGG	2 cut(s)	463, 933
BseRI	GAGGAG	3 cut(s)	29, 134, 560
BseSI	GKGCMC	2 cut(s)	57, 627
BseXI	GCAGC	3 cut(s)	139, 679, 873
Bsh1236I	CGCG	1 cut(s)	278
Bsh1285I	CGRYCG	1 cut(s)	282
BshFI	GGCC	4 cut(s)	55, 125, 346, 1043
BshNI	GGYRCC	2 cut(s)	105, 208
BsiEI	CGRYCG	1 cut(s)	282
BsiHKAI	GWGCWC	1 cut(s)	627
BsiSI	CCGG	3 cut(s)	212, 264, 282
BslI	CCNNNNNNNGG	2 cut(s)	86, 241
BsmAI	GTCTC	1 cut(s)	873
BsnI	GGCC	4 cut(s)	55, 125, 346, 1043
Bsp120I	GGGCCC	1 cut(s)	53
Bsp1286I	GDGCHC	2 cut(s)	57, 627
Bsp143I	GATC	5 cut(s)	96, 138, 174, 552, 934
Bsp68I	TCGCGA	1 cut(s)	278
BspACI	CCGC	3 cut(s)	512, 683, 945
BspANI	GGCC	4 cut(s)	55, 125, 346, 1043
BspCNI	CTCAG	1 cut(s)	641
BspFNI	CGCG	1 cut(s)	278
BspHI	TCATGA	2 cut(s)	165, 780
BspLI	GGNNCC	5 cut(s)	55, 56, 107, 210, 960
BspOI	GCTAGC	1 cut(s)	944
BspPI	GGATC	2 cut(s)	560, 942
BspQI	GCTCTTC	1 cut(s)	222
BspT107I	GGYRCC	2 cut(s)	105, 208
BsrBI	CCGCTC	1 cut(s)	685
BsrDI	GCAATG	4 cut(s)	141, 387, 687, 1002
BsrFI	RCCGGY	1 cut(s)	211
BsrI	ACTGG	2 cut(s)	463, 933
BssAI	RCCGGY	1 cut(s)	211
BssECI	CCNNGG	1 cut(s)	347
BssMI	GATC	5 cut(s)	96, 138, 174, 552, 934
BssNAI	GTATAC	1 cut(s)	847
Bst1107I	GTATAC	1 cut(s)	847
Bst4CI	ACNGT	3 cut(s)	105, 482, 860
Bst6I	CTCTTC	2 cut(s)	87, 222
BstAPI	GCANNNNNTGC	1 cut(s)	208
BstBAI	YACGTR	1 cut(s)	295
BstC8I	GCNNGC	5 cut(s)	24, 188, 213, 335, 942
BstDEI	CTNAG	3 cut(s)	44, 561, 628
BstDSI	CCRYGG	1 cut(s)	347
BstF5I	GGATG	2 cut(s)	260, 323
BstFNI	CGCG	1 cut(s)	278
BstH2I	RGCGCY	1 cut(s)	504
BstHHI	GCGC	2 cut(s)	477, 503
BstKTI	GATC	5 cut(s)	99, 141, 177, 555, 937
BstMAI	GTCTC	1 cut(s)	873
BstMBI	GATC	5 cut(s)	96, 138, 174, 552, 934
BstMCI	CGRYCG	1 cut(s)	282
BstMWI	GCNNNNNNNGC	6 cut(s)	152, 208, 343, 474, 509, 1049
BstNSI	RCATGY	2 cut(s)	292, 1033
BstPAI	GACNNNNGTC	1 cut(s)	858
BstSCI	CCNGG	1 cut(s)	281
BstSLI	GKGCMC	2 cut(s)	57, 627
BstUI	CGCG	1 cut(s)	278
BstV1I	GCAGC	3 cut(s)	139, 679, 873
BstV2I	GAAGAC	2 cut(s)	321, 858
BstX2I	RGATCY	1 cut(s)	934
BstYI	RGATCY	1 cut(s)	934
BstZ17I	GTATAC	1 cut(s)	847
BsuRI	GGCC	4 cut(s)	55, 125, 346, 1043
BtgI	CCRYGG	1 cut(s)	347
BtsCI	GGATG	2 cut(s)	260, 323
BtsIMutI	CAGTG	2 cut(s)	926, 1041
BtuMI	TCGCGA	1 cut(s)	278
Cac8I	GCNNGC	5 cut(s)	24, 188, 213, 335, 942
CciI	TCATGA	2 cut(s)	165, 780
CfoI	GCGC	2 cut(s)	477, 503
Cfr10I	RCCGGY	1 cut(s)	211
Cfr13I	GGNCC	3 cut(s)	53, 54, 959
Csp6I	GTAC	3 cut(s)	286, 483, 1000
CviAII	CATG	8 cut(s)	166, 172, 205, 289, 524, 781, 798, 1030
CviQI	GTAC	3 cut(s)	286, 483, 1000
DdeI	CTNAG	3 cut(s)	44, 561, 628
DpnI	GATC	5 cut(s)	98, 140, 176, 554, 936
DpnII	GATC	5 cut(s)	96, 138, 174, 552, 934
DraIII	CACNNNGTG	3 cut(s)	86, 105, 208
EaeI	YGGCCR	1 cut(s)	1041
Eam1104I	CTCTTC	2 cut(s)	87, 222
EarI	CTCTTC	2 cut(s)	87, 222
Eco147I	AGGCCT	1 cut(s)	125
Eco24I	GRGCYC	1 cut(s)	57
Eco47I	GGWCC	1 cut(s)	959
Eco57I	CTGAAG	3 cut(s)	203, 731, 888
Eco72I	CACGTG	1 cut(s)	295
EcoO109I	RGGNCCY	2 cut(s)	54, 959
EcoT38I	GRGCYC	1 cut(s)	57
FaeI	CATG	8 cut(s)	169, 175, 208, 292, 527, 784, 801, 1033
FatI	CATG	8 cut(s)	165, 171, 204, 288, 523, 780, 797, 1029
FblI	GTMKAC	1 cut(s)	846
Fnu4HI	GCNGC	4 cut(s)	153, 693, 887, 945
FokI	GGATG	2 cut(s)	247, 310
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	4 cut(s)	153, 693, 887, 945
FspBI	CTAG	3 cut(s)	161, 731, 941
FspI	TGCGCA	1 cut(s)	476
GlaI	GCGC	2 cut(s)	476, 502
GluI	GCNGC	4 cut(s)	153, 693, 887, 945
HaeII	RGCGCY	1 cut(s)	504
HaeIII	GGCC	4 cut(s)	55, 125, 346, 1043
HapII	CCGG	3 cut(s)	212, 264, 282
HhaI	GCGC	2 cut(s)	477, 503
Hin1II	CATG	8 cut(s)	169, 175, 208, 292, 527, 784, 801, 1033
Hin6I	GCGC	2 cut(s)	475, 501
HinP1I	GCGC	2 cut(s)	475, 501
HindIII	AAGCTT	1 cut(s)	46
HinfI	GANTC	4 cut(s)	305, 413, 427, 506
HpaII	CCGG	3 cut(s)	212, 264, 282
Hpy166II	GTNNAC	2 cut(s)	625, 847
Hpy188I	TCNGA	4 cut(s)	328, 661, 864, 873
Hpy188III	TCNNGA	5 cut(s)	166, 277, 367, 530, 781
Hpy8I	GTNNAC	2 cut(s)	625, 847
Hpy99I	CGWCG	1 cut(s)	373
HpyAV	CCTTC	3 cut(s)	373, 713, 875
HpyCH4III	ACNGT	3 cut(s)	105, 482, 860
HpyCH4IV	ACGT	2 cut(s)	294, 371
HpyCH4V	TGCA	9 cut(s)	260, 292, 625, 672, 695, 741, 801, 970, 1007
HpyF10VI	GCNNNNNNNGC	6 cut(s)	152, 208, 343, 474, 509, 1049
HpyF3I	CTNAG	3 cut(s)	44, 561, 628
HpySE526I	ACGT	2 cut(s)	294, 371
Hsp92II	CATG	8 cut(s)	169, 175, 208, 292, 527, 784, 801, 1033
HspAI	GCGC	2 cut(s)	475, 501
KroI	GCCGGC	1 cut(s)	211
KroNI	GCCGGC	1 cut(s)	213
Kzo9I	GATC	5 cut(s)	96, 138, 174, 552, 934
LguI	GCTCTTC	1 cut(s)	222
LmnI	GCTCC	2 cut(s)	990, 1019
Lsp1109I	GCAGC	3 cut(s)	139, 679, 873
LweI	GCATC	2 cut(s)	269, 592
MaeI	CTAG	3 cut(s)	161, 731, 941
MaeII	ACGT	2 cut(s)	294, 371
MaeIII	GTNAC	1 cut(s)	297
MalI	GATC	5 cut(s)	98, 140, 176, 554, 936
MbiI	CCGCTC	1 cut(s)	685
MboI	GATC	5 cut(s)	96, 138, 174, 552, 934
MboII	GAAGA	9 cut(s)	104, 142, 148, 209, 326, 440, 781, 863, 894
MfeI	CAATTG	1 cut(s)	572
MflI	RGATCY	1 cut(s)	934
MhlI	GDGCHC	2 cut(s)	57, 627
MlsI	TGGCCA	1 cut(s)	1043
MluNI	TGGCCA	1 cut(s)	1043
MlyI	GAGTC	2 cut(s)	436, 515
Mox20I	TGGCCA	1 cut(s)	1043
MroNI	GCCGGC	1 cut(s)	211
MscI	TGGCCA	1 cut(s)	1043
MslI	CAYNNNNRTG	5 cut(s)	170, 293, 328, 528, 1034
Msp20I	TGGCCA	1 cut(s)	1043
MspA1I	CMGCKG	2 cut(s)	512, 947
MspI	CCGG	3 cut(s)	212, 264, 282
MspR9I	CCNGG	1 cut(s)	283
MunI	CAATTG	1 cut(s)	572
MvnI	CGCG	1 cut(s)	278
MwoI	GCNNNNNNNGC	6 cut(s)	152, 208, 343, 474, 509, 1049
NaeI	GCCGGC	1 cut(s)	213
NciI	CCSGG	1 cut(s)	283
NdeII	GATC	5 cut(s)	96, 138, 174, 552, 934
NgoMIV	GCCGGC	1 cut(s)	211
NheI	GCTAGC	1 cut(s)	940
NlaIII	CATG	8 cut(s)	169, 175, 208, 292, 527, 784, 801, 1033
NlaIV	GGNNCC	5 cut(s)	55, 56, 107, 210, 960
NmeAIII	GCCGAG	2 cut(s)	368, 529
NruI	TCGCGA	1 cut(s)	278
NsbI	TGCGCA	1 cut(s)	476
NspI	RCATGY	2 cut(s)	292, 1033
PagI	TCATGA	2 cut(s)	165, 780
PceI	AGGCCT	1 cut(s)	125
PciSI	GCTCTTC	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
PdiI	GCCGGC	1 cut(s)	213
PfeI	GAWTC	2 cut(s)	305, 413
PflFI	GACNNNGTC	1 cut(s)	525
PflMI	CCANNNNNTGG	1 cut(s)	86
PkrI	GCNGC	4 cut(s)	154, 694, 888, 946
PleI	GAGTC	2 cut(s)	435, 514
PmaCI	CACGTG	1 cut(s)	295
PmlI	CACGTG	1 cut(s)	295
PpsI	GAGTC	2 cut(s)	435, 514
Ppu21I	YACGTR	1 cut(s)	295
PpuMI	RGGWCCY	1 cut(s)	959
PshAI	GACNNNNGTC	1 cut(s)	858
PsiI	TTATAA	1 cut(s)	435
Psp5II	RGGWCCY	1 cut(s)	959
PspCI	CACGTG	1 cut(s)	295
PspN4I	GGNNCC	5 cut(s)	55, 56, 107, 210, 960
PspOMI	GGGCCC	1 cut(s)	53
PspPI	GGNCC	3 cut(s)	53, 54, 959
PspPPI	RGGWCCY	1 cut(s)	959
PsuI	RGATCY	1 cut(s)	934
PsyI	GACNNNGTC	1 cut(s)	525
RruI	TCGCGA	1 cut(s)	278
RsaI	GTAC	3 cut(s)	287, 484, 1001
RsaNI	GTAC	3 cut(s)	286, 483, 1000
RseI	CAYNNNNRTG	5 cut(s)	170, 293, 328, 528, 1034
SapI	GCTCTTC	1 cut(s)	222
SatI	GCNGC	4 cut(s)	153, 693, 887, 945
Sau3AI	GATC	5 cut(s)	96, 138, 174, 552, 934
Sau96I	GGNCC	3 cut(s)	53, 54, 959
ScaI	AGTACT	1 cut(s)	484
SchI	GAGTC	2 cut(s)	436, 515
ScrFI	CCNGG	1 cut(s)	283
SduI	GDGCHC	2 cut(s)	57, 627
SetI	ASST	9 cut(s)	50, 154, 237, 297, 374, 457, 603, 616, 987
SfaNI	GCATC	2 cut(s)	269, 592
SinI	GGWCC	1 cut(s)	959
SmiMI	CAYNNNNRTG	5 cut(s)	170, 293, 328, 528, 1034
SpeI	ACTAGT	1 cut(s)	160
SseBI	AGGCCT	1 cut(s)	125
SsiI	CCGC	3 cut(s)	512, 683, 945
SspMI	CTAG	3 cut(s)	161, 731, 941
StuI	AGGCCT	1 cut(s)	125
StyD4I	CCNGG	1 cut(s)	281
TaaI	ACNGT	3 cut(s)	105, 482, 860
TaiI	ACGT	2 cut(s)	297, 374
TaqI	TCGA	2 cut(s)	422, 451
TatI	WGTACW	1 cut(s)	482
TauI	GCSGC	1 cut(s)	947
TfiI	GAWTC	2 cut(s)	305, 413
TscAI	CASTG	2 cut(s)	933, 1041
TseI	GCWGC	3 cut(s)	152, 692, 886
TspDTI	ATGAA	5 cut(s)	149, 551, 593, 785, 786
TspRI	CASTG	2 cut(s)	933, 1041
Tth111I	GACNNNGTC	1 cut(s)	525
Van91I	CCANNNNNTGG	1 cut(s)	86
VneI	GTGCAC	1 cut(s)	623
VpaK11BI	GGWCC	1 cut(s)	959
XapI	RAATTY	3 cut(s)	356, 755, 950
XceI	RCATGY	2 cut(s)	292, 1033
XmiI	GTMKAC	1 cut(s)	846
XspI	CTAG	3 cut(s)	161, 731, 941
ZrmI	AGTACT	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.