MD15G1116800.v1.1

) transport protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0010761
Physical Location & Seq
Forward (+)
8245670 .. 8247148
1479 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1116800.v1.1.491

Sequence Viewer

Length: 903 bp
ATGGGCATTCTAGACATTTCACCACCATGTTTGAACCTGTACAAACTCGTCCTAACCTATTTGTGTTCAACTGAATCAGCTCCAACAAATTCAGTTACTTTCACCATGGCTACCAAACTCTATGTTCTCACCATCTTCATCCTTCTCATCAGCATTGCCGGCAATGCAGCCGCAGCAGAGTCACAACAATGTGCGTCTAAATCCAAAGGAGAATGCCATGACAAAGCACAATCCCTAAAACTGAAGCTCATTGCCATAAGCTCTATTCTAGTCACAAGCATGATTGGTATCTGCTTACCCATTCTTTCACGCAAAGTTTCGGCTCTTCAGCCCGACAAAGACTTGTTCGTAGTTGTCAAAGCATTTGCCTCCGGCGTCATTCTTGCAACGGGTTACATGCACGTTTTACCCGACTCGTTTGATTGCTTGAGATCCGAATGTCTGCCTGAATCGCCTTGGAGGAAGTTCCCATTCACAACGTTTGTGGCTATGCTTTCGGCTTTGCTGGCTATGATGGTCGACTCGTTTTCGATGAGTTACTCTAGGAAATCTTTCCTTCGCAGAGCCGCCGCGCGCGAGGAAGATGAGGAGAGTGCTAAAAATAGTAGGTGCCCTGATCAATTAGAGCATTTTGGTCATGGCCATGGGATTAAGACTGAGGATGGGCTCAATGGTAAGGATTCACAGTTGCTGAAGCATCGTGTTGTCGCGCAGGTATTGGAACTAGGGATCGTAGTGCACTCGGTAGTGATTGGATTGTCAATGGGGGCATCTGATAATCCATGCACAATGAGACCACTCATTGCTGCCATTTGTTTCCATCAATTCTTTGAAGGAATGGGTCTAGGTGGATGCATACTACAGGTTAGATTATTAATCTGCAAATATGATTTTAGCCCTTGA

Protein Analysis

301

Amino Acids

32.7

Weight (kDa)

7.95

Isoelectric Point (pI)

50.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 79 - 290 1.5e-47 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010761)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04032
fragaria_vesca FvH4_4g28790 FvH4_4g28790 FvH4_5g31650
malus_domestica MD13G1054100.v1.1 MD15G1116800.v1.1 MD16G1052500.v1.1
prunus_persica Prupe.1G298100_v2.0.a1
pyrus_communis pycom13g04810 pycom15g10520
rosa_chinensis RchiOBHm_Chr4g0436921
rosa_laevigata RLG00000006486
rosa_multiflora Rmu_sc0001464.1_g000008
rosa_roxburghii Rroxscaffold_5G00377990
rosa_rugosa Rorug04G0297400
rosa_samantha Rh4AG351700 Rh4BG360700 Rh4CG375000 Rh4DG354900
rosa_wichuraiana Rw4G030780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 703
AccB1I GGYRCC 1 cut(s) 609
AccI GTMKAC 1 cut(s) 519
AccII CGCG 4 cut(s) 572, 574, 576, 710
AciI CCGC 3 cut(s) 171, 567, 570
AclI AACGTT 1 cut(s) 479
AclWI GGATC 2 cut(s) 426, 737
AcoI YGGCCR 1 cut(s) 640
AcsI RAATTY 1 cut(s) 88
AcuI CTGAAG 3 cut(s) 263, 311, 713
AcyI GRCGYC 1 cut(s) 375
AfaI GTAC 1 cut(s) 41
AgsI TTSAA 3 cut(s) 34, 69, 833
AluBI AGCT 3 cut(s) 80, 247, 261
AluI AGCT 3 cut(s) 80, 247, 261
Alw21I GWGCWC 1 cut(s) 741
Alw26I GTCTC 1 cut(s) 787
Alw44I GTGCAC 1 cut(s) 737
AlwI GGATC 2 cut(s) 426, 737
AlwNI CAGNNNCTG 1 cut(s) 691
AoxI GGCC 1 cut(s) 640
ApaLI GTGCAC 1 cut(s) 737
ApeKI GCWGC 3 cut(s) 167, 173, 806
ApoI RAATTY 1 cut(s) 88
AseI ATTAAT 1 cut(s) 875
Asp700I GAANNNNTTC 1 cut(s) 551
AspLEI GCGC 3 cut(s) 574, 576, 712
AsuHPI GGTGA 3 cut(s) 12, 94, 121
BaeGI GKGCMC 2 cut(s) 614, 741
BalI TGGCCA 1 cut(s) 642
BanI GGYRCC 1 cut(s) 609
BanII GRGCYC 1 cut(s) 669
Bbv12I GWGCWC 1 cut(s) 741
BbvI GCAGC 3 cut(s) 179, 185, 793
BccI CCATC 4 cut(s) 140, 508, 656, 828
BclI TGATCA 1 cut(s) 616
BcoDI GTCTC 1 cut(s) 787
BfaI CTAG 5 cut(s) 11, 269, 543, 725, 845
BfmI CTRYAG 1 cut(s) 860
BfuAI ACCTGC 1 cut(s) 703
BisI GCNGC 6 cut(s) 168, 171, 174, 567, 570, 807
BlsI GCNGC 6 cut(s) 169, 172, 175, 568, 571, 808
BmiI GGNNCC 1 cut(s) 611
BmsI GCATC 3 cut(s) 706, 779, 842
BpuEI CTTGAG 1 cut(s) 448
BsaBI GATNNNNATC 1 cut(s) 287
BsaHI GRCGYC 1 cut(s) 375
BsaI GGTCTC 1 cut(s) 787
BsaJI CCNNGG 3 cut(s) 105, 455, 643
Bse118I RCCGGY 1 cut(s) 158
Bse3DI GCAATG 4 cut(s) 153, 169, 249, 801
Bse8I GATNNNNATC 1 cut(s) 287
BseDI CCNNGG 3 cut(s) 105, 455, 643
BseGI GGATG 3 cut(s) 138, 667, 857
BseJI GATNNNNATC 1 cut(s) 287
BseMI GCAATG 4 cut(s) 153, 169, 249, 801
BseMII CTCAG 1 cut(s) 648
BsePI GCGCGC 1 cut(s) 572
BseRI GAGGAG 1 cut(s) 602
BseSI GKGCMC 2 cut(s) 614, 741
BseXI GCAGC 3 cut(s) 179, 185, 793
Bsh1236I CGCG 4 cut(s) 572, 574, 576, 710
BshFI GGCC 1 cut(s) 642
BshNI GGYRCC 1 cut(s) 609
BsiHKAI GWGCWC 1 cut(s) 741
BsiSI CCGG 2 cut(s) 159, 372
BsmAI GTCTC 1 cut(s) 787
BsmI GAATGC 2 cut(s) 6, 218
BsnI GGCC 1 cut(s) 642
Bso31I GGTCTC 1 cut(s) 787
Bsp1286I GDGCHC 3 cut(s) 614, 669, 741
Bsp1407I TGTACA 1 cut(s) 39
Bsp143I GATC 3 cut(s) 431, 616, 729
Bsp19I CCATGG 2 cut(s) 105, 643
BspACI CCGC 3 cut(s) 171, 567, 570
BspANI GGCC 1 cut(s) 642
BspCNI CTCAG 1 cut(s) 649
BspFNI CGCG 4 cut(s) 572, 574, 576, 710
BspLI GGNNCC 1 cut(s) 611
BspMI ACCTGC 1 cut(s) 703
BspPI GGATC 2 cut(s) 426, 737
BspQI GCTCTTC 1 cut(s) 330
BspT107I GGYRCC 1 cut(s) 609
BspTNI GGTCTC 1 cut(s) 787
BsrDI GCAATG 4 cut(s) 153, 169, 249, 801
BsrFI RCCGGY 1 cut(s) 158
BsrGI TGTACA 1 cut(s) 39
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 3 cut(s) 105, 455, 643
BssHII GCGCGC 1 cut(s) 572
BssMI GATC 3 cut(s) 431, 616, 729
BssNI GRCGYC 1 cut(s) 375
BssT1I CCWWGG 3 cut(s) 105, 455, 643
Bst4CI ACNGT 1 cut(s) 687
Bst6I CTCTTC 1 cut(s) 330
BstACI GRCGYC 1 cut(s) 375
BstAUI TGTACA 1 cut(s) 39
BstC8I GCNNGC 3 cut(s) 160, 507, 574
BstDEI CTNAG 1 cut(s) 657
BstDSI CCRYGG 2 cut(s) 105, 643
BstF5I GGATG 3 cut(s) 138, 667, 857
BstFNI CGCG 4 cut(s) 572, 574, 576, 710
BstHHI GCGC 3 cut(s) 574, 576, 712
BstKTI GATC 3 cut(s) 434, 619, 732
BstMAI GTCTC 1 cut(s) 787
BstMBI GATC 3 cut(s) 431, 616, 729
BstMWI GCNNNNNNNGC 5 cut(s) 159, 164, 173, 451, 506
BstNSI RCATGY 1 cut(s) 400
BstSFI CTRYAG 1 cut(s) 860
BstSLI GKGCMC 2 cut(s) 614, 741
BstUI CGCG 4 cut(s) 572, 574, 576, 710
BstV1I GCAGC 3 cut(s) 179, 185, 793
BstX2I RGATCY 1 cut(s) 431
BstYI RGATCY 1 cut(s) 431
BsuRI GGCC 1 cut(s) 642
BtgI CCRYGG 2 cut(s) 105, 643
BtsCI GGATG 3 cut(s) 138, 667, 857
BveI ACCTGC 1 cut(s) 703
Cac8I GCNNGC 3 cut(s) 160, 507, 574
CaiI CAGNNNCTG 1 cut(s) 691
CfoI GCGC 3 cut(s) 574, 576, 712
Cfr10I RCCGGY 1 cut(s) 158
CseI GACGC 2 cut(s) 183, 364
Csp6I GTAC 1 cut(s) 40
CspCI CAANNNNNGTGG 4 cut(s) 12, 47, 465, 500
CviAII CATG 8 cut(s) 27, 106, 218, 280, 397, 638, 644, 783
CviQI GTAC 1 cut(s) 40
DdeI CTNAG 1 cut(s) 657
DpnI GATC 3 cut(s) 433, 618, 731
DpnII GATC 3 cut(s) 431, 616, 729
EaeI YGGCCR 1 cut(s) 640
Eam1104I CTCTTC 1 cut(s) 330
EarI CTCTTC 1 cut(s) 330
Eco130I CCWWGG 3 cut(s) 105, 455, 643
Eco24I GRGCYC 1 cut(s) 669
Eco31I GGTCTC 1 cut(s) 787
Eco57I CTGAAG 3 cut(s) 263, 311, 713
EcoT14I CCWWGG 3 cut(s) 105, 455, 643
EcoT22I ATGCAT 1 cut(s) 857
EcoT38I GRGCYC 1 cut(s) 669
ErhI CCWWGG 3 cut(s) 105, 455, 643
FaeI CATG 8 cut(s) 30, 109, 221, 283, 400, 641, 647, 786
FatI CATG 8 cut(s) 26, 105, 217, 279, 396, 637, 643, 782
FbaI TGATCA 1 cut(s) 616
FblI GTMKAC 1 cut(s) 519
Fnu4HI GCNGC 6 cut(s) 168, 171, 174, 567, 570, 807
FokI GGATG 3 cut(s) 125, 674, 864
FriOI GRGCYC 1 cut(s) 669
Fsp4HI GCNGC 6 cut(s) 168, 171, 174, 567, 570, 807
FspBI CTAG 5 cut(s) 11, 269, 543, 725, 845
GlaI GCGC 3 cut(s) 573, 575, 711
GluI GCNGC 6 cut(s) 168, 171, 174, 567, 570, 807
HaeIII GGCC 1 cut(s) 642
HapII CCGG 2 cut(s) 159, 372
HgaI GACGC 2 cut(s) 183, 364
HhaI GCGC 3 cut(s) 574, 576, 712
Hin1I GRCGYC 1 cut(s) 375
Hin1II CATG 8 cut(s) 30, 109, 221, 283, 400, 641, 647, 786
Hin6I GCGC 3 cut(s) 572, 574, 710
HinP1I GCGC 3 cut(s) 572, 574, 710
HincII GTYRAC 1 cut(s) 520
HindII GTYRAC 1 cut(s) 520
HinfI GANTC 6 cut(s) 74, 179, 413, 449, 521, 680
HpaII CCGG 2 cut(s) 159, 372
HphI GGTGA 3 cut(s) 12, 94, 121
Hpy166II GTNNAC 2 cut(s) 520, 739
Hpy188I TCNGA 2 cut(s) 436, 775
Hpy188III TCNNGA 1 cut(s) 11
Hpy8I GTNNAC 2 cut(s) 520, 739
HpyAV CCTTC 3 cut(s) 152, 566, 827
HpyCH4III ACNGT 1 cut(s) 687
HpyCH4IV ACGT 2 cut(s) 402, 479
HpyCH4V TGCA 7 cut(s) 167, 386, 400, 739, 786, 855, 882
HpyF10VI GCNNNNNNNGC 5 cut(s) 159, 164, 173, 451, 506
HpyF3I CTNAG 1 cut(s) 657
HpySE526I ACGT 2 cut(s) 402, 479
Hsp92I GRCGYC 1 cut(s) 375
Hsp92II CATG 8 cut(s) 30, 109, 221, 283, 400, 641, 647, 786
HspAI GCGC 3 cut(s) 572, 574, 710
KroI GCCGGC 1 cut(s) 158
KroNI GCCGGC 1 cut(s) 160
Ksp22I TGATCA 1 cut(s) 616
Kzo9I GATC 3 cut(s) 431, 616, 729
LguI GCTCTTC 1 cut(s) 330
LmnI GCTCC 1 cut(s) 85
LpnPI CCDG 8 cut(s) 50, 172, 385, 459, 491, 627, 698, 848
Lsp1109I GCAGC 3 cut(s) 179, 185, 793
LweI GCATC 3 cut(s) 706, 779, 842
MaeI CTAG 5 cut(s) 11, 269, 543, 725, 845
MaeII ACGT 2 cut(s) 402, 479
MaeIII GTNAC 5 cut(s) 94, 180, 271, 392, 536
MalI GATC 3 cut(s) 433, 618, 731
MauBI CGCGCGCG 1 cut(s) 572
MboI GATC 3 cut(s) 431, 616, 729
MboII GAAGA 3 cut(s) 127, 317, 593
MflI RGATCY 1 cut(s) 431
MhlI GDGCHC 3 cut(s) 614, 669, 741
MlsI TGGCCA 1 cut(s) 642
MluCI AATT 3 cut(s) 88, 620, 824
MluNI TGGCCA 1 cut(s) 642
MlyI GAGTC 3 cut(s) 188, 407, 515
MmeI TCCRAC 1 cut(s) 107
MnlI CCTC 5 cut(s) 379, 453, 571, 580, 652
Mox20I TGGCCA 1 cut(s) 642
Mph1103I ATGCAT 1 cut(s) 857
MroNI GCCGGC 1 cut(s) 158
MroXI GAANNNNTTC 1 cut(s) 551
MscI TGGCCA 1 cut(s) 642
MseI TTAA 2 cut(s) 651, 875
MslI CAYNNNNRTG 4 cut(s) 25, 187, 278, 642
Msp20I TGGCCA 1 cut(s) 642
MspI CCGG 2 cut(s) 159, 372
Mva1269I GAATGC 2 cut(s) 6, 218
MvnI CGCG 4 cut(s) 572, 574, 576, 710
MwoI GCNNNNNNNGC 5 cut(s) 159, 164, 173, 451, 506
NaeI GCCGGC 1 cut(s) 160
NcoI CCATGG 2 cut(s) 105, 643
NdeII GATC 3 cut(s) 431, 616, 729
NgoMIV GCCGGC 1 cut(s) 158
NlaIII CATG 8 cut(s) 30, 109, 221, 283, 400, 641, 647, 786
NlaIV GGNNCC 1 cut(s) 611
NmuCI GTSAC 2 cut(s) 180, 271
NsiI ATGCAT 1 cut(s) 857
NspI RCATGY 1 cut(s) 400
PauI GCGCGC 1 cut(s) 572
PciSI GCTCTTC 1 cut(s) 330
PcsI WCGNNNNNNNCGW 1 cut(s) 408
PctI GAATGC 2 cut(s) 6, 218
PdiI GCCGGC 1 cut(s) 160
PdmI GAANNNNTTC 1 cut(s) 551
PfeI GAWTC 3 cut(s) 74, 449, 680
PkrI GCNGC 6 cut(s) 169, 172, 175, 568, 571, 808
PleI GAGTC 3 cut(s) 187, 407, 515
PpsI GAGTC 3 cut(s) 187, 407, 515
PshBI ATTAAT 1 cut(s) 875
Psp1406I AACGTT 1 cut(s) 479
PspN4I GGNNCC 1 cut(s) 611
PstNI CAGNNNCTG 1 cut(s) 691
PsuI RGATCY 1 cut(s) 431
PteI GCGCGC 1 cut(s) 572
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
RseI CAYNNNNRTG 4 cut(s) 25, 187, 278, 642
SalI GTCGAC 1 cut(s) 518
SapI GCTCTTC 1 cut(s) 330
SaqAI TTAA 2 cut(s) 651, 875
SatI GCNGC 6 cut(s) 168, 171, 174, 567, 570, 807
Sau3AI GATC 3 cut(s) 431, 616, 729
SchI GAGTC 3 cut(s) 188, 407, 515
SduI GDGCHC 3 cut(s) 614, 669, 741
SfaNI GCATC 3 cut(s) 706, 779, 842
SfcI CTRYAG 1 cut(s) 860
SmiMI CAYNNNNRTG 4 cut(s) 25, 187, 278, 642
SmlI CTYRAG 1 cut(s) 427
SmoI CTYRAG 1 cut(s) 427
Sse9I AATT 3 cut(s) 88, 620, 824
SsiI CCGC 3 cut(s) 171, 567, 570
SspMI CTAG 5 cut(s) 11, 269, 543, 725, 845
StyI CCWWGG 3 cut(s) 105, 455, 643
TaaI ACNGT 1 cut(s) 687
TaiI ACGT 2 cut(s) 405, 482
TaqI TCGA 2 cut(s) 519, 530
TasI AATT 3 cut(s) 88, 620, 824
TatI WGTACW 1 cut(s) 39
TauI GCSGC 3 cut(s) 173, 569, 572
TfiI GAWTC 3 cut(s) 74, 449, 680
Tru1I TTAA 2 cut(s) 651, 875
Tru9I TTAA 2 cut(s) 651, 875
TseFI GTSAC 2 cut(s) 180, 271
TseI GCWGC 3 cut(s) 167, 173, 806
Tsp45I GTSAC 2 cut(s) 180, 271
TspDTI ATGAA 1 cut(s) 127
VneI GTGCAC 1 cut(s) 737
VspI ATTAAT 1 cut(s) 875
XapI RAATTY 1 cut(s) 88
XbaI TCTAGA 1 cut(s) 10
XceI RCATGY 1 cut(s) 400
XmiI GTMKAC 1 cut(s) 519
XmnI GAANNNNTTC 1 cut(s) 551
XspI CTAG 5 cut(s) 11, 269, 543, 725, 845
Zsp2I ATGCAT 1 cut(s) 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.