Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0010761

Physical Location & Seq

Genomic Coordinates Forward (+)

22787920 .. 22789670

Gene Structure 1751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g31650.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGCAACCAAACCCTACCTCTTGCTTGTTGCCATCTTCATCCTCCTCCTAAGCTTTGCACCCCTCAATGTTTCTGCAGAGACACCACACTGTGGGGAAGAGATCACATCATGCCACAACAAAGCCGAGGCCTTGAAGATAAAGTACATTGCCATAGCTTCCATACTAGTGATGAGCATGATCGGGGTTTGCTTTCCAGTCTATTCCAACAAGGTGAAGGCTCTTCAGCCCGATACCAACCTATTTGTGATCGTCAAGGCGTTTGCATCTGGTGTCATACTCGCCACCGGCTACATGCATGTCTTACCAGACTCGTTTAACGACTTGGCATCCCAGTGCTTGCCCCAAAAGCCGTGGAGGAACTTTCCCTTCACGACCTTTGTGGCAATGCTATCGGCTGTTGTGTGCATGATGATCGATTCGTTTTCGATGAGTCGTTATAGAAAATCTTTTCTTCGAGCTACCGGTAATGGCGTCGTGATGAAAATTGAGGAGGGGATCAATACTAAGGAGGAACAACTGATGAGATATCGTGTTGTGGCCAAGGTACTGGAAACAGGTATAGTAGTGCACTCAGTAGTGATTGGTTTATCAATGGGGTCATCTCAAAATCCTTGCACAATTAGACCGCTCATTGCTGCAATTTGTTTCCATCAACTATTTGAAGGCATGGGTCTAGGAGGCTGCATTCTACAGGCTGAGTTTAAGAGCAAGATGAAGTTGATAATGGTGTTCTTCTTTTCATGTACAACACCATTTGGGATAGGGTTAGGGATTGCTTTGAATTCTGTATACAGCGACAACAGTCCGAATTCTCTGATTGTGGAAGGGCTGCTAAATGCTTGTTCTGCAGGGCTACTCAATTATATGGCACTGGTGGATCTTCTGGCAGCTGATTTTATGGGTTCTAAACTGCAAGGAAATATGAAGCTCCAAGTATGGTCGTACATTGCAGTTCTCTTAGGGGCCGGAGGAATGTCAGTTATGGCCATTTGGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0015691 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

334

Amino Acids

36.18

Weight (kDa)

8.63

Isoelectric Point (pI)

40.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	46 - 330	3.6e-70	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04032
fragaria_vesca	FvH4_4g28790 FvH4_4g28790 FvH4_5g31650
malus_domestica	MD13G1054100.v1.1 MD15G1116800.v1.1 MD16G1052500.v1.1
prunus_persica	Prupe.1G298100_v2.0.a1
pyrus_communis	pycom13g04810 pycom15g10520
rosa_chinensis	RchiOBHm_Chr4g0436921
rosa_laevigata	RLG00000006486
rosa_multiflora	Rmu_sc0001464.1_g000008
rosa_roxburghii	Rroxscaffold_5G00377990
rosa_rugosa	Rorug04G0297400
rosa_samantha	Rh4AG351700 Rh4BG360700 Rh4CG375000 Rh4DG354900
rosa_wichuraiana	Rw4G030780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	92
AccBSI	CCGCTC	1 cut(s)	631
AccI	GTMKAC	1 cut(s)	792
AciI	CCGC	1 cut(s)	629
AclWI	GGATC	2 cut(s)	506, 888
AcoI	YGGCCR	2 cut(s)	540, 987
AcsI	RAATTY	2 cut(s)	784, 811
AcuI	CTGAAG	1 cut(s)	209
AcyI	GRCGYC	1 cut(s)	474
AdeI	CACNNNGTG	1 cut(s)	92
AfaI	GTAC	4 cut(s)	146, 549, 748, 947
AfiI	CCNNNNNNNGG	1 cut(s)	92
AgeI	ACCGGT	1 cut(s)	464
AgsI	TTSAA	3 cut(s)	136, 665, 784
AhlI	ACTAGT	1 cut(s)	166
AluBI	AGCT	5 cut(s)	54, 158, 461, 893, 931
AluI	AGCT	5 cut(s)	54, 158, 461, 893, 931
Alw21I	GWGCWC	1 cut(s)	573
Alw26I	GTCTC	1 cut(s)	74
Alw44I	GTGCAC	1 cut(s)	569
AlwI	GGATC	2 cut(s)	506, 888
AoxI	GGCC	4 cut(s)	129, 540, 966, 987
ApaLI	GTGCAC	1 cut(s)	569
ApeKI	GCWGC	4 cut(s)	638, 684, 832, 890
ApoI	RAATTY	2 cut(s)	784, 811
AsiGI	ACCGGT	1 cut(s)	464
AspS9I	GGNCC	1 cut(s)	966
AsuHPI	GGTGA	1 cut(s)	226
BaeGI	GKGCMC	1 cut(s)	573
BalI	TGGCCA	2 cut(s)	542, 989
BarI	GAAGNNNNNNTAC	2 cut(s)	128, 160
Bbv12I	GWGCWC	1 cut(s)	573
BbvI	GCAGC	4 cut(s)	625, 671, 819, 902
BccI	CCATC	2 cut(s)	41, 660
BceAI	ACGGC	1 cut(s)	337
BcgI	CGANNNNNNTGC	4 cut(s)	375, 397, 409, 431
BcoDI	GTCTC	1 cut(s)	74
BcuI	ACTAGT	1 cut(s)	166
BfaI	CTAG	2 cut(s)	167, 677
BfmI	CTRYAG	3 cut(s)	75, 692, 849
BglI	GCCNNNNNGGC	1 cut(s)	995
BisI	GCNGC	4 cut(s)	639, 685, 833, 891
BlsI	GCNGC	4 cut(s)	640, 686, 834, 892
BmgT120I	GGNCC	1 cut(s)	966
BmiI	GGNNCC	1 cut(s)	967
BmrI	ACTGGG	1 cut(s)	328
BmsI	GCATC	2 cut(s)	275, 338
BmuI	ACTGGG	1 cut(s)	328
BoxI	GACNNNNGTC	1 cut(s)	804
Bpu10I	CCTNAGC	1 cut(s)	50
Bsa29I	ATCGAT	1 cut(s)	417
BsaHI	GRCGYC	1 cut(s)	474
BsaJI	CCNNGG	3 cut(s)	126, 353, 543
BsaWI	WCCGGW	1 cut(s)	464
Bsc4I	CCNNNNNNNGG	1 cut(s)	92
Bse118I	RCCGGY	2 cut(s)	287, 464
Bse1I	ACTGG	4 cut(s)	197, 334, 555, 879
Bse3DI	GCAATG	4 cut(s)	147, 393, 633, 948
BseCI	ATCGAT	1 cut(s)	417
BseDI	CCNNGG	3 cut(s)	126, 353, 543
BseGI	GGATG	2 cut(s)	39, 329
BseLI	CCNNNNNNNGG	1 cut(s)	92
BseMI	GCAATG	4 cut(s)	147, 393, 633, 948
BseMII	CTCAG	2 cut(s)	588, 690
BseNI	ACTGG	4 cut(s)	197, 334, 555, 879
BseRI	GAGGAG	2 cut(s)	35, 506
BseSI	GKGCMC	1 cut(s)	573
BseXI	GCAGC	4 cut(s)	625, 671, 819, 902
BshFI	GGCC	4 cut(s)	131, 542, 968, 989
BshTI	ACCGGT	1 cut(s)	464
BshVI	ATCGAT	1 cut(s)	417
BsiHKAI	GWGCWC	1 cut(s)	573
BsiSI	CCGG	3 cut(s)	288, 465, 969
BslI	CCNNNNNNNGG	1 cut(s)	92
BsmAI	GTCTC	1 cut(s)	74
BsmI	GAATGC	1 cut(s)	687
BsnI	GGCC	4 cut(s)	131, 542, 968, 989
Bsp1286I	GDGCHC	1 cut(s)	573
Bsp1407I	TGTACA	1 cut(s)	746
Bsp143I	GATC	6 cut(s)	102, 180, 249, 414, 498, 880
BspACI	CCGC	1 cut(s)	629
BspANI	GGCC	4 cut(s)	131, 542, 968, 989
BspCNI	CTCAG	2 cut(s)	587, 691
BspDI	ATCGAT	1 cut(s)	417
BspLI	GGNNCC	1 cut(s)	967
BspMAI	CTGCAG	2 cut(s)	79, 853
BspPI	GGATC	2 cut(s)	506, 888
BspQI	GCTCTTC	1 cut(s)	228
BsrBI	CCGCTC	1 cut(s)	631
BsrDI	GCAATG	4 cut(s)	147, 393, 633, 948
BsrFI	RCCGGY	2 cut(s)	287, 464
BsrGI	TGTACA	1 cut(s)	746
BsrI	ACTGG	4 cut(s)	197, 334, 555, 879
BssAI	RCCGGY	2 cut(s)	287, 464
BssECI	CCNNGG	3 cut(s)	126, 353, 543
BssMI	GATC	6 cut(s)	102, 180, 249, 414, 498, 880
BssNAI	GTATAC	1 cut(s)	793
BssNI	GRCGYC	1 cut(s)	474
BssT1I	CCWWGG	1 cut(s)	543
Bst1107I	GTATAC	1 cut(s)	793
Bst4CI	ACNGT	2 cut(s)	92, 806
Bst6I	CTCTTC	2 cut(s)	93, 228
BstACI	GRCGYC	1 cut(s)	474
BstAUI	TGTACA	1 cut(s)	746
BstC8I	GCNNGC	1 cut(s)	341
BstDEI	CTNAG	5 cut(s)	50, 507, 574, 699, 961
BstDSI	CCRYGG	1 cut(s)	353
BstF5I	GGATG	2 cut(s)	39, 329
BstKTI	GATC	6 cut(s)	105, 183, 252, 417, 501, 883
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	6 cut(s)	102, 180, 249, 414, 498, 880
BstMWI	GCNNNNNNNGC	3 cut(s)	349, 848, 995
BstNSI	RCATGY	2 cut(s)	298, 302
BstPAI	GACNNNNGTC	1 cut(s)	804
BstSFI	CTRYAG	3 cut(s)	75, 692, 849
BstSLI	GKGCMC	1 cut(s)	573
BstV1I	GCAGC	4 cut(s)	625, 671, 819, 902
BstX2I	RGATCY	1 cut(s)	880
BstXI	CCANNNNNNTGG	1 cut(s)	550
BstYI	RGATCY	1 cut(s)	880
BstZ17I	GTATAC	1 cut(s)	793
Bsu15I	ATCGAT	1 cut(s)	417
BsuRI	GGCC	4 cut(s)	131, 542, 968, 989
BsuTUI	ATCGAT	1 cut(s)	417
BtgI	CCRYGG	1 cut(s)	353
BtsCI	GGATG	2 cut(s)	39, 329
BtsIMutI	CAGTG	3 cut(s)	88, 341, 872
Cac8I	GCNNGC	1 cut(s)	341
Cfr10I	RCCGGY	2 cut(s)	287, 464
Cfr13I	GGNCC	1 cut(s)	966
ClaI	ATCGAT	1 cut(s)	417
CseI	GACGC	1 cut(s)	463
Csp6I	GTAC	4 cut(s)	145, 548, 747, 946
CspAI	ACCGGT	1 cut(s)	464
CspCI	CAANNNNNGTGG	2 cut(s)	335, 370
CviAII	CATG	7 cut(s)	111, 178, 295, 299, 409, 670, 744
CviQI	GTAC	4 cut(s)	145, 548, 747, 946
DdeI	CTNAG	5 cut(s)	50, 507, 574, 699, 961
DpnI	GATC	6 cut(s)	104, 182, 251, 416, 500, 882
DpnII	GATC	6 cut(s)	102, 180, 249, 414, 498, 880
DraIII	CACNNNGTG	1 cut(s)	92
EaeI	YGGCCR	2 cut(s)	540, 987
Eam1104I	CTCTTC	2 cut(s)	93, 228
EarI	CTCTTC	2 cut(s)	93, 228
Eco130I	CCWWGG	1 cut(s)	543
Eco147I	AGGCCT	1 cut(s)	131
Eco32I	GATATC	1 cut(s)	530
Eco57I	CTGAAG	1 cut(s)	209
EcoRI	GAATTC	2 cut(s)	784, 811
EcoRV	GATATC	1 cut(s)	530
EcoT14I	CCWWGG	1 cut(s)	543
EcoT22I	ATGCAT	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	543
FaeI	CATG	7 cut(s)	114, 181, 298, 302, 412, 673, 747
FatI	CATG	7 cut(s)	110, 177, 294, 298, 408, 669, 743
FblI	GTMKAC	1 cut(s)	792
Fnu4HI	GCNGC	4 cut(s)	639, 685, 833, 891
FokI	GGATG	2 cut(s)	26, 316
Fsp4HI	GCNGC	4 cut(s)	639, 685, 833, 891
FspBI	CTAG	2 cut(s)	167, 677
GluI	GCNGC	4 cut(s)	639, 685, 833, 891
HaeIII	GGCC	4 cut(s)	131, 542, 968, 989
HapII	CCGG	3 cut(s)	288, 465, 969
HgaI	GACGC	1 cut(s)	463
Hin1I	GRCGYC	1 cut(s)	474
Hin1II	CATG	7 cut(s)	114, 181, 298, 302, 412, 673, 747
HindIII	AAGCTT	1 cut(s)	52
HinfI	GANTC	3 cut(s)	311, 419, 433
HpaII	CCGG	3 cut(s)	288, 465, 969
HphI	GGTGA	1 cut(s)	226
Hpy166II	GTNNAC	2 cut(s)	571, 793
Hpy188I	TCNGA	2 cut(s)	810, 819
Hpy188III	TCNNGA	2 cut(s)	373, 478
Hpy8I	GTNNAC	2 cut(s)	571, 793
Hpy99I	CGWCG	1 cut(s)	479
HpyAV	CCTTC	4 cut(s)	211, 379, 659, 821
HpyCH4III	ACNGT	2 cut(s)	92, 806
HpyF10VI	GCNNNNNNNGC	3 cut(s)	349, 848, 995
HpyF3I	CTNAG	5 cut(s)	50, 507, 574, 699, 961
Hsp92I	GRCGYC	1 cut(s)	474
Hsp92II	CATG	7 cut(s)	114, 181, 298, 302, 412, 673, 747
Kzo9I	GATC	6 cut(s)	102, 180, 249, 414, 498, 880
LguI	GCTCTTC	1 cut(s)	228
LmnI	GCTCC	1 cut(s)	936
Lsp1109I	GCAGC	4 cut(s)	625, 671, 819, 902
LweI	GCATC	2 cut(s)	275, 338
MaeI	CTAG	2 cut(s)	167, 677
MalI	GATC	6 cut(s)	104, 182, 251, 416, 500, 882
MbiI	CCGCTC	1 cut(s)	631
MboI	GATC	6 cut(s)	102, 180, 249, 414, 498, 880
MboII	GAAGA	7 cut(s)	28, 110, 148, 215, 446, 727, 875
MflI	RGATCY	1 cut(s)	880
MhlI	GDGCHC	1 cut(s)	573
MlsI	TGGCCA	2 cut(s)	542, 989
MluCI	AATT	6 cut(s)	486, 621, 642, 784, 811, 862
MluNI	TGGCCA	2 cut(s)	542, 989
MlyI	GAGTC	2 cut(s)	305, 442
MmeI	TCCRAC	1 cut(s)	231
Mox20I	TGGCCA	2 cut(s)	542, 989
Mph1103I	ATGCAT	1 cut(s)	300
MscI	TGGCCA	2 cut(s)	542, 989
MseI	TTAA	2 cut(s)	318, 705
MslI	CAYNNNNRTG	2 cut(s)	167, 334
Msp20I	TGGCCA	2 cut(s)	542, 989
MspA1I	CMGCKG	1 cut(s)	893
MspI	CCGG	3 cut(s)	288, 465, 969
Mva1269I	GAATGC	1 cut(s)	687
MwoI	GCNNNNNNNGC	3 cut(s)	349, 848, 995
NdeII	GATC	6 cut(s)	102, 180, 249, 414, 498, 880
NlaIII	CATG	7 cut(s)	114, 181, 298, 302, 412, 673, 747
NlaIV	GGNNCC	1 cut(s)	967
NmeAIII	GCCGAG	1 cut(s)	151
NsiI	ATGCAT	1 cut(s)	300
NspI	RCATGY	2 cut(s)	298, 302
PceI	AGGCCT	1 cut(s)	131
PciSI	GCTCTTC	1 cut(s)	228
PctI	GAATGC	1 cut(s)	687
PfeI	GAWTC	1 cut(s)	419
PflMI	CCANNNNNTGG	1 cut(s)	92
PinAI	ACCGGT	1 cut(s)	464
PkrI	GCNGC	4 cut(s)	640, 686, 834, 892
PleI	GAGTC	2 cut(s)	305, 441
PpsI	GAGTC	2 cut(s)	305, 441
PshAI	GACNNNNGTC	1 cut(s)	804
PspN4I	GGNNCC	1 cut(s)	967
PspPI	GGNCC	1 cut(s)	966
PstI	CTGCAG	2 cut(s)	79, 853
PsuI	RGATCY	1 cut(s)	880
PvuII	CAGCTG	1 cut(s)	893
RsaI	GTAC	4 cut(s)	146, 549, 748, 947
RsaNI	GTAC	4 cut(s)	145, 548, 747, 946
RseI	CAYNNNNRTG	2 cut(s)	167, 334
SapI	GCTCTTC	1 cut(s)	228
SaqAI	TTAA	2 cut(s)	318, 705
SatI	GCNGC	4 cut(s)	639, 685, 833, 891
Sau3AI	GATC	6 cut(s)	102, 180, 249, 414, 498, 880
Sau96I	GGNCC	1 cut(s)	966
SchI	GAGTC	2 cut(s)	305, 442
SduI	GDGCHC	1 cut(s)	573
SfaNI	GCATC	2 cut(s)	275, 338
SfcI	CTRYAG	3 cut(s)	75, 692, 849
SmiMI	CAYNNNNRTG	2 cut(s)	167, 334
SpeI	ACTAGT	1 cut(s)	166
Sse9I	AATT	6 cut(s)	486, 621, 642, 784, 811, 862
SseBI	AGGCCT	1 cut(s)	131
SsiI	CCGC	1 cut(s)	629
SspMI	CTAG	2 cut(s)	167, 677
StuI	AGGCCT	1 cut(s)	131
StyI	CCWWGG	1 cut(s)	543
TaaI	ACNGT	2 cut(s)	92, 806
TaqI	TCGA	3 cut(s)	417, 428, 457
TasI	AATT	6 cut(s)	486, 621, 642, 784, 811, 862
TatI	WGTACW	2 cut(s)	144, 746
TfiI	GAWTC	1 cut(s)	419
Tru1I	TTAA	2 cut(s)	318, 705
Tru9I	TTAA	2 cut(s)	318, 705
TscAI	CASTG	3 cut(s)	95, 341, 879
TseI	GCWGC	4 cut(s)	638, 684, 832, 890
TspDTI	ATGAA	5 cut(s)	28, 497, 731, 732, 941
TspRI	CASTG	3 cut(s)	95, 341, 879
Van91I	CCANNNNNTGG	1 cut(s)	92
VneI	GTGCAC	1 cut(s)	569
XapI	RAATTY	2 cut(s)	784, 811
XceI	RCATGY	2 cut(s)	298, 302
XmiI	GTMKAC	1 cut(s)	792
XspI	CTAG	2 cut(s)	167, 677
Zsp2I	ATGCAT	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.