pycom15g10520

) transport protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0010761
Physical Location & Seq
Forward (+)
6986076 .. 6987319
1244 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g10520.2

Sequence Viewer

Length: 681 bp
ATGGCTACCAAACGCTATGTTCTCACCATCTTCATCCTTCTCATCAGCATTGCCGGCAATGCAGCGGCAGCGGAGTCACAGCAATGTGGGTCTAAATCCAAAGGAGAATGCCATGACAAAGCACAATCCCTAAAACTGAAGCTCATTGCCATAAGCTCTATTCTAGTCACAAGCATGATTGGTATCTGCCTACCCATTCTTTCACGCAAAGTTTCGGCTCTTCAGCCCGACAAAGACTTGTTCGTAGTTGTCAAAGCATTTGCCTCCGGCGTCATTCTTGCAACGGGTTACATGCACGTTTTACCCGACTCGTTTGATTGCTTGAGATCCGAATGTCTGCCCGAATCGCCTTGGAGGAAGTTCCCATTCACAACGTTTGTGGCTATGCTTTCGGCTTTGCTGGCTATGATGGTGGACTCTTTTTCGATGAGTTACTCTAGGAAATCTTTCCTTCGCAGAGCCGCTGCGCGCGAGGAAGATGAGGAGAGTGCTAAAAATAGTAGGTGCCCTGATCAATTAGAGCATTTTGGTCATGGCCATGGGATTAAGACTGAGGATGGGCTCAATGGTAAGGATTCACAGTTGCTGAAGCATCGTGTTGTCGCGCAGGTTGATGCAGGTATTGGAACTAGGGATCGTAGTGCACTCGGTAGTGATTGGATTGTCAATGGGGGCATCTGA

Protein Analysis

227

Amino Acids

24.59

Weight (kDa)

8.73

Isoelectric Point (pI)

53.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010761)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04032
fragaria_vesca FvH4_4g28790 FvH4_4g28790 FvH4_5g31650
malus_domestica MD13G1054100.v1.1 MD15G1116800.v1.1 MD16G1052500.v1.1
prunus_persica Prupe.1G298100_v2.0.a1
pyrus_communis pycom13g04810 pycom15g10520
rosa_chinensis RchiOBHm_Chr4g0436921
rosa_laevigata RLG00000006486
rosa_multiflora Rmu_sc0001464.1_g000008
rosa_roxburghii Rroxscaffold_5G00377990
rosa_rugosa Rorug04G0297400
rosa_samantha Rh4AG351700 Rh4BG360700 Rh4CG375000 Rh4DG354900
rosa_wichuraiana Rw4G030780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 598, 608
AccB1I GGYRCC 1 cut(s) 504
AccII CGCG 3 cut(s) 469, 471, 605
AciI CCGC 3 cut(s) 65, 71, 462
AclI AACGTT 1 cut(s) 374
AclWI GGATC 2 cut(s) 321, 642
AcoI YGGCCR 1 cut(s) 535
AcuI CTGAAG 3 cut(s) 158, 206, 608
AcyI GRCGYC 1 cut(s) 270
AluBI AGCT 2 cut(s) 142, 156
AluI AGCT 2 cut(s) 142, 156
Alw21I GWGCWC 1 cut(s) 646
Alw44I GTGCAC 1 cut(s) 642
AlwI GGATC 2 cut(s) 321, 642
AlwNI CAGNNNCTG 1 cut(s) 586
AoxI GGCC 1 cut(s) 535
ApaLI GTGCAC 1 cut(s) 642
ApeKI GCWGC 3 cut(s) 62, 68, 464
Asp700I GAANNNNTTC 1 cut(s) 446
AspLEI GCGC 3 cut(s) 469, 471, 607
AsuHPI GGTGA 1 cut(s) 16
BaeGI GKGCMC 2 cut(s) 509, 646
BalI TGGCCA 1 cut(s) 537
BanI GGYRCC 1 cut(s) 504
BanII GRGCYC 1 cut(s) 564
Bbv12I GWGCWC 1 cut(s) 646
BbvI GCAGC 3 cut(s) 74, 80, 451
BccI CCATC 3 cut(s) 35, 403, 551
BclI TGATCA 1 cut(s) 511
BfaI CTAG 3 cut(s) 164, 438, 630
BfuAI ACCTGC 2 cut(s) 598, 608
BisI GCNGC 5 cut(s) 63, 66, 69, 462, 465
BlsI GCNGC 5 cut(s) 64, 67, 70, 463, 466
BmiI GGNNCC 1 cut(s) 506
BmsI GCATC 2 cut(s) 601, 604
BpuEI CTTGAG 1 cut(s) 343
BsaBI GATNNNNATC 1 cut(s) 182
BsaHI GRCGYC 1 cut(s) 270
BsaJI CCNNGG 2 cut(s) 350, 538
Bse118I RCCGGY 1 cut(s) 53
Bse3DI GCAATG 4 cut(s) 48, 64, 89, 144
Bse8I GATNNNNATC 1 cut(s) 182
BseDI CCNNGG 2 cut(s) 350, 538
BseGI GGATG 2 cut(s) 33, 562
BseJI GATNNNNATC 1 cut(s) 182
BseMI GCAATG 4 cut(s) 48, 64, 89, 144
BseMII CTCAG 1 cut(s) 543
BsePI GCGCGC 1 cut(s) 467
BseRI GAGGAG 1 cut(s) 497
BseSI GKGCMC 2 cut(s) 509, 646
BseXI GCAGC 3 cut(s) 74, 80, 451
Bsh1236I CGCG 3 cut(s) 469, 471, 605
BshFI GGCC 1 cut(s) 537
BshNI GGYRCC 1 cut(s) 504
BsiHKAI GWGCWC 1 cut(s) 646
BsiSI CCGG 2 cut(s) 54, 267
BsmI GAATGC 1 cut(s) 113
BsnI GGCC 1 cut(s) 537
Bsp1286I GDGCHC 3 cut(s) 509, 564, 646
Bsp143I GATC 3 cut(s) 326, 511, 634
Bsp19I CCATGG 1 cut(s) 538
BspACI CCGC 3 cut(s) 65, 71, 462
BspANI GGCC 1 cut(s) 537
BspCNI CTCAG 1 cut(s) 544
BspFNI CGCG 3 cut(s) 469, 471, 605
BspLI GGNNCC 1 cut(s) 506
BspMI ACCTGC 2 cut(s) 598, 608
BspPI GGATC 2 cut(s) 321, 642
BspQI GCTCTTC 1 cut(s) 225
BspT107I GGYRCC 1 cut(s) 504
BsrDI GCAATG 4 cut(s) 48, 64, 89, 144
BsrFI RCCGGY 1 cut(s) 53
BssAI RCCGGY 1 cut(s) 53
BssECI CCNNGG 2 cut(s) 350, 538
BssHII GCGCGC 1 cut(s) 467
BssMI GATC 3 cut(s) 326, 511, 634
BssNI GRCGYC 1 cut(s) 270
BssT1I CCWWGG 2 cut(s) 350, 538
Bst4CI ACNGT 1 cut(s) 582
Bst6I CTCTTC 1 cut(s) 225
BstACI GRCGYC 1 cut(s) 270
BstC8I GCNNGC 3 cut(s) 55, 402, 469
BstDEI CTNAG 1 cut(s) 552
BstDSI CCRYGG 1 cut(s) 538
BstF5I GGATG 2 cut(s) 33, 562
BstFNI CGCG 3 cut(s) 469, 471, 605
BstHHI GCGC 3 cut(s) 469, 471, 607
BstKTI GATC 3 cut(s) 329, 514, 637
BstMBI GATC 3 cut(s) 326, 511, 634
BstMWI GCNNNNNNNGC 5 cut(s) 54, 59, 68, 346, 401
BstNSI RCATGY 1 cut(s) 295
BstSLI GKGCMC 2 cut(s) 509, 646
BstUI CGCG 3 cut(s) 469, 471, 605
BstV1I GCAGC 3 cut(s) 74, 80, 451
BstX2I RGATCY 1 cut(s) 326
BstYI RGATCY 1 cut(s) 326
BsuRI GGCC 1 cut(s) 537
BtgI CCRYGG 1 cut(s) 538
BtsCI GGATG 2 cut(s) 33, 562
BveI ACCTGC 2 cut(s) 598, 608
Cac8I GCNNGC 3 cut(s) 55, 402, 469
CaiI CAGNNNCTG 1 cut(s) 586
CfoI GCGC 3 cut(s) 469, 471, 607
Cfr10I RCCGGY 1 cut(s) 53
CseI GACGC 1 cut(s) 259
CspCI CAANNNNNGTGG 2 cut(s) 360, 395
CviAII CATG 5 cut(s) 113, 175, 292, 533, 539
DdeI CTNAG 1 cut(s) 552
DpnI GATC 3 cut(s) 328, 513, 636
DpnII GATC 3 cut(s) 326, 511, 634
EaeI YGGCCR 1 cut(s) 535
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
Eco130I CCWWGG 2 cut(s) 350, 538
Eco24I GRGCYC 1 cut(s) 564
Eco57I CTGAAG 3 cut(s) 158, 206, 608
EcoT14I CCWWGG 2 cut(s) 350, 538
EcoT38I GRGCYC 1 cut(s) 564
ErhI CCWWGG 2 cut(s) 350, 538
FaeI CATG 5 cut(s) 116, 178, 295, 536, 542
FaiI YATR 9 cut(s) 18, 114, 152, 176, 293, 386, 407, 534, 540
FatI CATG 5 cut(s) 112, 174, 291, 532, 538
FbaI TGATCA 1 cut(s) 511
Fnu4HI GCNGC 5 cut(s) 63, 66, 69, 462, 465
FokI GGATG 2 cut(s) 20, 569
FriOI GRGCYC 1 cut(s) 564
Fsp4HI GCNGC 5 cut(s) 63, 66, 69, 462, 465
FspBI CTAG 3 cut(s) 164, 438, 630
GlaI GCGC 3 cut(s) 468, 470, 606
GluI GCNGC 5 cut(s) 63, 66, 69, 462, 465
HaeIII GGCC 1 cut(s) 537
HapII CCGG 2 cut(s) 54, 267
HgaI GACGC 1 cut(s) 259
HhaI GCGC 3 cut(s) 469, 471, 607
Hin1I GRCGYC 1 cut(s) 270
Hin1II CATG 5 cut(s) 116, 178, 295, 536, 542
Hin6I GCGC 3 cut(s) 467, 469, 605
HinP1I GCGC 3 cut(s) 467, 469, 605
HinfI GANTC 5 cut(s) 74, 308, 344, 416, 575
HpaII CCGG 2 cut(s) 54, 267
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 2 cut(s) 415, 644
Hpy188I TCNGA 2 cut(s) 331, 680
Hpy8I GTNNAC 2 cut(s) 415, 644
HpyAV CCTTC 2 cut(s) 47, 461
HpyCH4III ACNGT 1 cut(s) 582
HpyCH4IV ACGT 2 cut(s) 297, 374
HpyCH4V TGCA 5 cut(s) 62, 281, 295, 617, 644
HpyF10VI GCNNNNNNNGC 5 cut(s) 54, 59, 68, 346, 401
HpyF3I CTNAG 1 cut(s) 552
HpySE526I ACGT 2 cut(s) 297, 374
Hsp92I GRCGYC 1 cut(s) 270
Hsp92II CATG 5 cut(s) 116, 178, 295, 536, 542
HspAI GCGC 3 cut(s) 467, 469, 605
KroI GCCGGC 1 cut(s) 53
KroNI GCCGGC 1 cut(s) 55
Ksp22I TGATCA 1 cut(s) 511
Kzo9I GATC 3 cut(s) 326, 511, 634
LguI GCTCTTC 1 cut(s) 225
LpnPI CCDG 6 cut(s) 67, 280, 386, 522, 593, 603
Lsp1109I GCAGC 3 cut(s) 74, 80, 451
LweI GCATC 2 cut(s) 601, 604
MaeI CTAG 3 cut(s) 164, 438, 630
MaeII ACGT 2 cut(s) 297, 374
MaeIII GTNAC 4 cut(s) 75, 166, 287, 431
MalI GATC 3 cut(s) 328, 513, 636
MboI GATC 3 cut(s) 326, 511, 634
MboII GAAGA 3 cut(s) 22, 212, 488
MflI RGATCY 1 cut(s) 326
MhlI GDGCHC 3 cut(s) 509, 564, 646
MlsI TGGCCA 1 cut(s) 537
MluCI AATT 1 cut(s) 515
MluNI TGGCCA 1 cut(s) 537
MlyI GAGTC 3 cut(s) 83, 302, 410
MnlI CCTC 5 cut(s) 274, 348, 466, 475, 547
Mox20I TGGCCA 1 cut(s) 537
MroNI GCCGGC 1 cut(s) 53
MroXI GAANNNNTTC 1 cut(s) 446
MscI TGGCCA 1 cut(s) 537
MseI TTAA 1 cut(s) 546
MslI CAYNNNNRTG 3 cut(s) 82, 173, 537
Msp20I TGGCCA 1 cut(s) 537
MspA1I CMGCKG 3 cut(s) 65, 71, 464
MspI CCGG 2 cut(s) 54, 267
Mva1269I GAATGC 1 cut(s) 113
MvnI CGCG 3 cut(s) 469, 471, 605
MwoI GCNNNNNNNGC 5 cut(s) 54, 59, 68, 346, 401
NaeI GCCGGC 1 cut(s) 55
NcoI CCATGG 1 cut(s) 538
NdeII GATC 3 cut(s) 326, 511, 634
NgoMIV GCCGGC 1 cut(s) 53
NlaIII CATG 5 cut(s) 116, 178, 295, 536, 542
NlaIV GGNNCC 1 cut(s) 506
NmuCI GTSAC 2 cut(s) 75, 166
NspI RCATGY 1 cut(s) 295
PauI GCGCGC 1 cut(s) 467
PciSI GCTCTTC 1 cut(s) 225
PcsI WCGNNNNNNNCGW 1 cut(s) 303
PctI GAATGC 1 cut(s) 113
PdiI GCCGGC 1 cut(s) 55
PdmI GAANNNNTTC 1 cut(s) 446
PfeI GAWTC 2 cut(s) 344, 575
PkrI GCNGC 5 cut(s) 64, 67, 70, 463, 466
PleI GAGTC 3 cut(s) 82, 302, 410
PpsI GAGTC 3 cut(s) 82, 302, 410
Psp1406I AACGTT 1 cut(s) 374
PspN4I GGNNCC 1 cut(s) 506
PstNI CAGNNNCTG 1 cut(s) 586
PsuI RGATCY 1 cut(s) 326
PteI GCGCGC 1 cut(s) 467
RseI CAYNNNNRTG 3 cut(s) 82, 173, 537
SapI GCTCTTC 1 cut(s) 225
SaqAI TTAA 1 cut(s) 546
SatI GCNGC 5 cut(s) 63, 66, 69, 462, 465
Sau3AI GATC 3 cut(s) 326, 511, 634
SchI GAGTC 3 cut(s) 83, 302, 410
SduI GDGCHC 3 cut(s) 509, 564, 646
SetI ASST 7 cut(s) 144, 158, 300, 377, 506, 612, 622
SfaNI GCATC 2 cut(s) 601, 604
SmiMI CAYNNNNRTG 3 cut(s) 82, 173, 537
SmlI CTYRAG 1 cut(s) 322
SmoI CTYRAG 1 cut(s) 322
Sse9I AATT 1 cut(s) 515
SsiI CCGC 3 cut(s) 65, 71, 462
SspMI CTAG 3 cut(s) 164, 438, 630
StyI CCWWGG 2 cut(s) 350, 538
TaaI ACNGT 1 cut(s) 582
TaiI ACGT 2 cut(s) 300, 377
TaqI TCGA 1 cut(s) 425
TasI AATT 1 cut(s) 515
TauI GCSGC 2 cut(s) 68, 464
TfiI GAWTC 2 cut(s) 344, 575
Tru1I TTAA 1 cut(s) 546
Tru9I TTAA 1 cut(s) 546
TseFI GTSAC 2 cut(s) 75, 166
TseI GCWGC 3 cut(s) 62, 68, 464
Tsp45I GTSAC 2 cut(s) 75, 166
TspDTI ATGAA 1 cut(s) 22
VneI GTGCAC 1 cut(s) 642
XceI RCATGY 1 cut(s) 295
XmnI GAANNNNTTC 1 cut(s) 446
XspI CTAG 3 cut(s) 164, 438, 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.