Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0010761

Physical Location & Seq

Genomic Coordinates Reverse (-)

51996470 .. 51998157

Gene Structure 1688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG360700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGCAACCAAACACTTCTTGCTTGCCATCTTTGTCCTCCTCCTAAGCTTTTCACCCCTCAATGTTTCGGCAGTTTCGCCACAATGTGGGGAAGAGATCACACAGTGCCACAACAAAGAGGAGGCCTTGAAGATGAAGATCATTGCCATAGCTGCCATACTAGTCATGAGCATGATCGGGGTTTGCTTGCCATTATTTTCGCACATGGTGCCGGCTCTTCAGCCCGACAAGAACCTGTTTGTGGTGGTCAAGGCGTTTGCATCCGGTGTCATACTCGCGACCGGGTACATGCACGTGTTACCCGATTCGTTTGAAGACTTGACATCCGAGTGCTTGCCTGAAAGGCCGTGGAGGAAATTTCCCTTCACGACATTTGTGGCAATGCTCTCGGCTATTGTGTGTATGATGGTGGATTCAATTTCGATGAGTCGTTATAAAAAATCTTTTCTTCGAGCTACTGGTAATGGCGACTTGAGCAACAGTGCCAAAATTGAGAGCGCCGAATCAGCGGATATTGGACATGGTCGTGAAATGAAAATTGAGGAGGGGATCAATACTAAGGAGGAACAATTGATGAAGCATCGTATTGTGGCAAAGGTATTGGAAACAGGTATTGTAGTGCACTCAGTAGTGATTGGATTGTCAATGGGGTCATCTGAAAACCCTTGCACAATTAGACCGCTCATTGCTGCAATTTGTTTCCATCAACTATTTGAAGGAATGGGTCTAGGAGGGTGCATACTTCAGGCTGAATTTGGAAGCAAGATGAAAGTAATCATGATGTTCTTCTTTTCATGCACAACACCATTTGGGATAGTGTTAGGGATTGCGTTGTCTAATGTATACGAAGACAACAGTCCGAAGTCTCTGATTGTGGAAGGGCTGCTAAATGCTTGTTCTTCAGGGCTACTCAATTATATGGCACTGGTGGATCTGCTAGCCGCTGAATTTATGGGTCCTAAACTGCAATCAAATATAAAGCTCCAAGTATGGTCGTACATTGCAGTTCTTTTAGGAGCAGGAGGCATGTCAGTAATGGCCATTTGGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0015691 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

350

Amino Acids

38.02

Weight (kDa)

6.25

Isoelectric Point (pI)

52.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	44 - 347	4.6e-75	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04032
fragaria_vesca	FvH4_4g28790 FvH4_4g28790 FvH4_5g31650
malus_domestica	MD13G1054100.v1.1 MD15G1116800.v1.1 MD16G1052500.v1.1
prunus_persica	Prupe.1G298100_v2.0.a1
pyrus_communis	pycom13g04810 pycom15g10520
rosa_chinensis	RchiOBHm_Chr4g0436921
rosa_laevigata	RLG00000006486
rosa_multiflora	Rmu_sc0001464.1_g000008
rosa_roxburghii	Rroxscaffold_5G00377990
rosa_rugosa	Rorug04G0297400
rosa_samantha	Rh4AG351700 Rh4BG360700 Rh4CG375000 Rh4DG354900
rosa_wichuraiana	Rw4G030780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	435
AccB1I	GGYRCC	1 cut(s)	208
AccB7I	CCANNNNNTGG	1 cut(s)	86
AccBSI	CCGCTC	1 cut(s)	682
AccI	GTMKAC	1 cut(s)	843
AccII	CGCG	1 cut(s)	278
AciI	CCGC	3 cut(s)	509, 680, 942
AclWI	GGATC	2 cut(s)	557, 939
AcoI	YGGCCR	1 cut(s)	1038
AcsI	RAATTY	3 cut(s)	356, 752, 947
AcuI	CTGAAG	3 cut(s)	203, 728, 885
AcvI	CACGTG	1 cut(s)	295
AdeI	CACNNNGTG	3 cut(s)	86, 105, 208
AfaI	GTAC	2 cut(s)	287, 998
AfiI	CCNNNNNNNGG	2 cut(s)	86, 241
AflIII	ACRYGT	1 cut(s)	294
AgsI	TTSAA	4 cut(s)	130, 314, 417, 716
AhlI	ACTAGT	1 cut(s)	160
AluBI	AGCT	4 cut(s)	48, 152, 455, 982
AluI	AGCT	4 cut(s)	48, 152, 455, 982
Alw21I	GWGCWC	1 cut(s)	624
Alw26I	GTCTC	1 cut(s)	870
Alw44I	GTGCAC	1 cut(s)	620
AlwI	GGATC	2 cut(s)	557, 939
AoxI	GGCC	3 cut(s)	123, 344, 1038
ApaLI	GTGCAC	1 cut(s)	620
ApeKI	GCWGC	3 cut(s)	152, 689, 883
ApoI	RAATTY	3 cut(s)	356, 752, 947
AspLEI	GCGC	1 cut(s)	500
AspS9I	GGNCC	1 cut(s)	956
AsuC2I	CCSGG	1 cut(s)	283
AsuHPI	GGTGA	1 cut(s)	45
AsuNHI	GCTAGC	1 cut(s)	937
AvaII	GGWCC	1 cut(s)	956
BaeGI	GKGCMC	1 cut(s)	624
BalI	TGGCCA	1 cut(s)	1040
BanI	GGYRCC	1 cut(s)	208
BbrPI	CACGTG	1 cut(s)	295
BbsI	GAAGAC	2 cut(s)	321, 855
Bbv12I	GWGCWC	1 cut(s)	624
BbvI	GCAGC	3 cut(s)	139, 676, 870
BccI	CCATC	3 cut(s)	35, 400, 711
BceAI	ACGGC	1 cut(s)	331
BcgI	CGANNNNNNTGC	2 cut(s)	369, 403
BcnI	CCSGG	1 cut(s)	283
BcoDI	GTCTC	1 cut(s)	870
BcuI	ACTAGT	1 cut(s)	160
BfaI	CTAG	3 cut(s)	161, 728, 938
BfoI	RGCGCY	1 cut(s)	501
BglI	GCCNNNNNGGC	2 cut(s)	343, 1046
BisI	GCNGC	4 cut(s)	153, 690, 884, 942
BlsI	GCNGC	4 cut(s)	154, 691, 885, 943
Bme1390I	CCNGG	1 cut(s)	283
Bme18I	GGWCC	1 cut(s)	956
BmgT120I	GGNCC	1 cut(s)	956
BmiI	GGNNCC	2 cut(s)	210, 957
BmrFI	CCNGG	1 cut(s)	283
BmsI	GCATC	2 cut(s)	269, 589
BmtI	GCTAGC	1 cut(s)	941
BoxI	GACNNNNGTC	1 cut(s)	855
BpiI	GAAGAC	2 cut(s)	321, 855
Bpu10I	CCTNAGC	1 cut(s)	44
BpuEI	CTTGAG	1 cut(s)	493
BpuMI	CCSGG	1 cut(s)	283
BsaAI	YACGTR	1 cut(s)	295
BsaBI	GATNNNNATC	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	347
BsaWI	WCCGGW	1 cut(s)	263
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 241
Bse118I	RCCGGY	1 cut(s)	211
Bse1I	ACTGG	2 cut(s)	463, 930
Bse3DI	GCAATG	4 cut(s)	141, 387, 684, 999
Bse8I	GATNNNNATC	1 cut(s)	137
BseDI	CCNNGG	1 cut(s)	347
BseGI	GGATG	2 cut(s)	260, 323
BseJI	GATNNNNATC	1 cut(s)	137
BseLI	CCNNNNNNNGG	2 cut(s)	86, 241
BseMI	GCAATG	4 cut(s)	141, 387, 684, 999
BseMII	CTCAG	1 cut(s)	639
BseNI	ACTGG	2 cut(s)	463, 930
BseRI	GAGGAG	3 cut(s)	29, 134, 557
BseSI	GKGCMC	1 cut(s)	624
BseXI	GCAGC	3 cut(s)	139, 676, 870
Bsh1236I	CGCG	1 cut(s)	278
Bsh1285I	CGRYCG	1 cut(s)	282
BshFI	GGCC	3 cut(s)	125, 346, 1040
BshNI	GGYRCC	1 cut(s)	208
BsiEI	CGRYCG	1 cut(s)	282
BsiHKAI	GWGCWC	1 cut(s)	624
BsiSI	CCGG	3 cut(s)	212, 264, 282
BslI	CCNNNNNNNGG	2 cut(s)	86, 241
BsmAI	GTCTC	1 cut(s)	870
BsnI	GGCC	3 cut(s)	125, 346, 1040
Bsp1286I	GDGCHC	1 cut(s)	624
Bsp143I	GATC	5 cut(s)	96, 138, 174, 549, 931
Bsp68I	TCGCGA	1 cut(s)	278
BspACI	CCGC	3 cut(s)	509, 680, 942
BspANI	GGCC	3 cut(s)	125, 346, 1040
BspCNI	CTCAG	1 cut(s)	638
BspFNI	CGCG	1 cut(s)	278
BspHI	TCATGA	2 cut(s)	165, 777
BspLI	GGNNCC	2 cut(s)	210, 957
BspOI	GCTAGC	1 cut(s)	941
BspPI	GGATC	2 cut(s)	557, 939
BspQI	GCTCTTC	1 cut(s)	222
BspT107I	GGYRCC	1 cut(s)	208
BsrBI	CCGCTC	1 cut(s)	682
BsrDI	GCAATG	4 cut(s)	141, 387, 684, 999
BsrFI	RCCGGY	1 cut(s)	211
BsrI	ACTGG	2 cut(s)	463, 930
BssAI	RCCGGY	1 cut(s)	211
BssECI	CCNNGG	1 cut(s)	347
BssMI	GATC	5 cut(s)	96, 138, 174, 549, 931
BssNAI	GTATAC	1 cut(s)	844
Bst1107I	GTATAC	1 cut(s)	844
Bst4CI	ACNGT	3 cut(s)	105, 482, 857
Bst6I	CTCTTC	2 cut(s)	87, 222
BstAPI	GCANNNNNTGC	1 cut(s)	208
BstBAI	YACGTR	1 cut(s)	295
BstC8I	GCNNGC	5 cut(s)	24, 188, 213, 335, 939
BstDEI	CTNAG	3 cut(s)	44, 558, 625
BstDSI	CCRYGG	1 cut(s)	347
BstF5I	GGATG	2 cut(s)	260, 323
BstFNI	CGCG	1 cut(s)	278
BstH2I	RGCGCY	1 cut(s)	501
BstHHI	GCGC	1 cut(s)	500
BstKTI	GATC	5 cut(s)	99, 141, 177, 552, 934
BstMAI	GTCTC	1 cut(s)	870
BstMBI	GATC	5 cut(s)	96, 138, 174, 549, 931
BstMCI	CGRYCG	1 cut(s)	282
BstMWI	GCNNNNNNNGC	6 cut(s)	152, 208, 343, 474, 506, 1046
BstNSI	RCATGY	2 cut(s)	292, 1030
BstPAI	GACNNNNGTC	1 cut(s)	855
BstSCI	CCNGG	1 cut(s)	281
BstSLI	GKGCMC	1 cut(s)	624
BstUI	CGCG	1 cut(s)	278
BstV1I	GCAGC	3 cut(s)	139, 676, 870
BstV2I	GAAGAC	2 cut(s)	321, 855
BstX2I	RGATCY	1 cut(s)	931
BstYI	RGATCY	1 cut(s)	931
BstZ17I	GTATAC	1 cut(s)	844
BsuRI	GGCC	3 cut(s)	125, 346, 1040
BtgI	CCRYGG	1 cut(s)	347
BtsCI	GGATG	2 cut(s)	260, 323
BtsIMutI	CAGTG	3 cut(s)	110, 487, 923
BtuMI	TCGCGA	1 cut(s)	278
Cac8I	GCNNGC	5 cut(s)	24, 188, 213, 335, 939
CciI	TCATGA	2 cut(s)	165, 777
CfoI	GCGC	1 cut(s)	500
Cfr10I	RCCGGY	1 cut(s)	211
Cfr13I	GGNCC	1 cut(s)	956
Csp6I	GTAC	2 cut(s)	286, 997
CviAII	CATG	8 cut(s)	166, 172, 205, 289, 521, 778, 795, 1027
CviQI	GTAC	2 cut(s)	286, 997
DdeI	CTNAG	3 cut(s)	44, 558, 625
DpnI	GATC	5 cut(s)	98, 140, 176, 551, 933
DpnII	GATC	5 cut(s)	96, 138, 174, 549, 931
DraIII	CACNNNGTG	3 cut(s)	86, 105, 208
EaeI	YGGCCR	1 cut(s)	1038
Eam1104I	CTCTTC	2 cut(s)	87, 222
EarI	CTCTTC	2 cut(s)	87, 222
Eco147I	AGGCCT	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	956
Eco57I	CTGAAG	3 cut(s)	203, 728, 885
Eco72I	CACGTG	1 cut(s)	295
EcoO109I	RGGNCCY	1 cut(s)	956
FaeI	CATG	8 cut(s)	169, 175, 208, 292, 524, 781, 798, 1030
FatI	CATG	8 cut(s)	165, 171, 204, 288, 520, 777, 794, 1026
FblI	GTMKAC	1 cut(s)	843
Fnu4HI	GCNGC	4 cut(s)	153, 690, 884, 942
FokI	GGATG	2 cut(s)	247, 310
Fsp4HI	GCNGC	4 cut(s)	153, 690, 884, 942
FspBI	CTAG	3 cut(s)	161, 728, 938
GlaI	GCGC	1 cut(s)	499
GluI	GCNGC	4 cut(s)	153, 690, 884, 942
HaeII	RGCGCY	1 cut(s)	501
HaeIII	GGCC	3 cut(s)	125, 346, 1040
HapII	CCGG	3 cut(s)	212, 264, 282
HhaI	GCGC	1 cut(s)	500
Hin1II	CATG	8 cut(s)	169, 175, 208, 292, 524, 781, 798, 1030
Hin6I	GCGC	1 cut(s)	498
HinP1I	GCGC	1 cut(s)	498
HindIII	AAGCTT	1 cut(s)	46
HinfI	GANTC	4 cut(s)	305, 413, 427, 503
HpaII	CCGG	3 cut(s)	212, 264, 282
HphI	GGTGA	1 cut(s)	45
Hpy166II	GTNNAC	2 cut(s)	622, 844
Hpy188I	TCNGA	4 cut(s)	328, 658, 861, 870
Hpy188III	TCNNGA	5 cut(s)	166, 277, 367, 527, 778
Hpy8I	GTNNAC	2 cut(s)	622, 844
HpyAV	CCTTC	3 cut(s)	373, 710, 872
HpyCH4III	ACNGT	3 cut(s)	105, 482, 857
HpyCH4IV	ACGT	1 cut(s)	294
HpyCH4V	TGCA	9 cut(s)	260, 292, 622, 669, 692, 738, 798, 967, 1004
HpyF10VI	GCNNNNNNNGC	6 cut(s)	152, 208, 343, 474, 506, 1046
HpyF3I	CTNAG	3 cut(s)	44, 558, 625
HpySE526I	ACGT	1 cut(s)	294
Hsp92II	CATG	8 cut(s)	169, 175, 208, 292, 524, 781, 798, 1030
HspAI	GCGC	1 cut(s)	498
KroI	GCCGGC	1 cut(s)	211
KroNI	GCCGGC	1 cut(s)	213
Kzo9I	GATC	5 cut(s)	96, 138, 174, 549, 931
LguI	GCTCTTC	1 cut(s)	222
LmnI	GCTCC	2 cut(s)	987, 1016
Lsp1109I	GCAGC	3 cut(s)	139, 676, 870
LweI	GCATC	2 cut(s)	269, 589
MaeI	CTAG	3 cut(s)	161, 728, 938
MaeII	ACGT	1 cut(s)	294
MaeIII	GTNAC	1 cut(s)	297
MalI	GATC	5 cut(s)	98, 140, 176, 551, 933
MbiI	CCGCTC	1 cut(s)	682
MboI	GATC	5 cut(s)	96, 138, 174, 549, 931
MboII	GAAGA	9 cut(s)	104, 142, 148, 209, 326, 440, 778, 860, 891
MfeI	CAATTG	1 cut(s)	569
MflI	RGATCY	1 cut(s)	931
MhlI	GDGCHC	1 cut(s)	624
MlsI	TGGCCA	1 cut(s)	1040
MluNI	TGGCCA	1 cut(s)	1040
MlyI	GAGTC	1 cut(s)	436
Mox20I	TGGCCA	1 cut(s)	1040
MroNI	GCCGGC	1 cut(s)	211
MscI	TGGCCA	1 cut(s)	1040
MslI	CAYNNNNRTG	4 cut(s)	170, 293, 328, 525
Msp20I	TGGCCA	1 cut(s)	1040
MspA1I	CMGCKG	2 cut(s)	509, 944
MspI	CCGG	3 cut(s)	212, 264, 282
MspR9I	CCNGG	1 cut(s)	283
MunI	CAATTG	1 cut(s)	569
MvnI	CGCG	1 cut(s)	278
MwoI	GCNNNNNNNGC	6 cut(s)	152, 208, 343, 474, 506, 1046
NaeI	GCCGGC	1 cut(s)	213
NciI	CCSGG	1 cut(s)	283
NdeII	GATC	5 cut(s)	96, 138, 174, 549, 931
NgoMIV	GCCGGC	1 cut(s)	211
NheI	GCTAGC	1 cut(s)	937
NlaIII	CATG	8 cut(s)	169, 175, 208, 292, 524, 781, 798, 1030
NlaIV	GGNNCC	2 cut(s)	210, 957
NmeAIII	GCCGAG	1 cut(s)	368
NruI	TCGCGA	1 cut(s)	278
NspI	RCATGY	2 cut(s)	292, 1030
PagI	TCATGA	2 cut(s)	165, 777
PceI	AGGCCT	1 cut(s)	125
PciSI	GCTCTTC	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
PdiI	GCCGGC	1 cut(s)	213
PfeI	GAWTC	3 cut(s)	305, 413, 503
PflFI	GACNNNGTC	1 cut(s)	522
PflMI	CCANNNNNTGG	1 cut(s)	86
PkrI	GCNGC	4 cut(s)	154, 691, 885, 943
PleI	GAGTC	1 cut(s)	435
PmaCI	CACGTG	1 cut(s)	295
PmlI	CACGTG	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	435
Ppu21I	YACGTR	1 cut(s)	295
PpuMI	RGGWCCY	1 cut(s)	956
PshAI	GACNNNNGTC	1 cut(s)	855
PsiI	TTATAA	1 cut(s)	435
Psp5II	RGGWCCY	1 cut(s)	956
PspCI	CACGTG	1 cut(s)	295
PspN4I	GGNNCC	2 cut(s)	210, 957
PspPI	GGNCC	1 cut(s)	956
PspPPI	RGGWCCY	1 cut(s)	956
PsuI	RGATCY	1 cut(s)	931
PsyI	GACNNNGTC	1 cut(s)	522
RruI	TCGCGA	1 cut(s)	278
RsaI	GTAC	2 cut(s)	287, 998
RsaNI	GTAC	2 cut(s)	286, 997
RseI	CAYNNNNRTG	4 cut(s)	170, 293, 328, 525
SapI	GCTCTTC	1 cut(s)	222
SatI	GCNGC	4 cut(s)	153, 690, 884, 942
Sau3AI	GATC	5 cut(s)	96, 138, 174, 549, 931
Sau96I	GGNCC	1 cut(s)	956
SchI	GAGTC	1 cut(s)	436
ScrFI	CCNGG	1 cut(s)	283
SduI	GDGCHC	1 cut(s)	624
SetI	ASST	8 cut(s)	50, 154, 237, 297, 457, 600, 613, 984
SfaNI	GCATC	2 cut(s)	269, 589
SinI	GGWCC	1 cut(s)	956
SmiMI	CAYNNNNRTG	4 cut(s)	170, 293, 328, 525
SmlI	CTYRAG	1 cut(s)	472
SmoI	CTYRAG	1 cut(s)	472
SpeI	ACTAGT	1 cut(s)	160
SseBI	AGGCCT	1 cut(s)	125
SsiI	CCGC	3 cut(s)	509, 680, 942
SspMI	CTAG	3 cut(s)	161, 728, 938
StuI	AGGCCT	1 cut(s)	125
StyD4I	CCNGG	1 cut(s)	281
TaaI	ACNGT	3 cut(s)	105, 482, 857
TaiI	ACGT	1 cut(s)	297
TaqI	TCGA	2 cut(s)	422, 451
TauI	GCSGC	1 cut(s)	944
TfiI	GAWTC	3 cut(s)	305, 413, 503
TscAI	CASTG	3 cut(s)	110, 487, 930
TseI	GCWGC	3 cut(s)	152, 689, 883
TspDTI	ATGAA	5 cut(s)	149, 548, 590, 782, 783
TspRI	CASTG	3 cut(s)	110, 487, 930
Tth111I	GACNNNGTC	1 cut(s)	522
Van91I	CCANNNNNTGG	1 cut(s)	86
VneI	GTGCAC	1 cut(s)	620
VpaK11BI	GGWCC	1 cut(s)	956
XapI	RAATTY	3 cut(s)	356, 752, 947
XceI	RCATGY	2 cut(s)	292, 1030
XmiI	GTMKAC	1 cut(s)	843
XspI	CTAG	3 cut(s)	161, 728, 938

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.