MD16G1052500.v1.1

) transport protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0010761
Physical Location & Seq
Reverse (-)
3753978 .. 3754406
429 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1052500.v1.1.491

Sequence Viewer

Length: 429 bp
ATGTCGGTGGTCAGTTGGATTTTTGTGTGGGTGAATTTTGTAGGATCTCCTTTCATGGGAGCCATTGCCTTGTGTGCCATTTTGGTCACGAGCATGATATGTGTCTGCATGCCGATGTTTTCACGCAAGGTATCGGCTCTCCGGCCCGACAAAAACATGTTCGTCATCTTCAAAGCATTCCCCTCCGGCGTCATACTTGCCAAGGGACGGGGTACGTACATGCACGTTTTGCCCGACTCGTTTGATTGCTTGAGATCCGAGTGGTTGCCCGAACATCCGTGGAGGAAGTTTCCATTCACAACGTTCGTGGAAATGCTTTCGGCCATGCTCACTCTCATGGTGGACTCGTTTTCGATGAGTCACTATAGGAAATATTTAGTTCGCGGTGCAGCTCGTGGCGGAGAGGAGGAGAGTGCCAAAAATATATAG

Protein Analysis

143

Amino Acids

16.1

Weight (kDa)

9.23

Isoelectric Point (pI)

58.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 22 - 124 9.8e-16 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010761)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04032
fragaria_vesca FvH4_4g28790 FvH4_4g28790 FvH4_5g31650
malus_domestica MD13G1054100.v1.1 MD15G1116800.v1.1 MD16G1052500.v1.1
prunus_persica Prupe.1G298100_v2.0.a1
pyrus_communis pycom13g04810 pycom15g10520
rosa_chinensis RchiOBHm_Chr4g0436921
rosa_laevigata RLG00000006486
rosa_multiflora Rmu_sc0001464.1_g000008
rosa_roxburghii Rroxscaffold_5G00377990
rosa_rugosa Rorug04G0297400
rosa_samantha Rh4AG351700 Rh4BG360700 Rh4CG375000 Rh4DG354900
rosa_wichuraiana Rw4G030780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 384
AciI CCGC 2 cut(s) 384, 399
AclI AACGTT 1 cut(s) 302
AclWI GGATC 2 cut(s) 52, 249
AcoI YGGCCR 1 cut(s) 321
AcsI RAATTY 1 cut(s) 34
AcyI GRCGYC 1 cut(s) 189
AfaI GTAC 2 cut(s) 214, 218
AfiI CCNNNNNNNGG 2 cut(s) 56, 207
AflIII ACRYGT 1 cut(s) 156
AgsI TTSAA 1 cut(s) 172
AluBI AGCT 1 cut(s) 392
AluI AGCT 1 cut(s) 392
AlwI GGATC 2 cut(s) 52, 249
AoxI GGCC 2 cut(s) 143, 321
ApeKI GCWGC 1 cut(s) 389
ApoI RAATTY 1 cut(s) 34
AspS9I GGNCC 1 cut(s) 144
AsuHPI GGTGA 1 cut(s) 43
BauI CACGAG 2 cut(s) 88, 393
BbvI GCAGC 1 cut(s) 401
BfmI CTRYAG 1 cut(s) 364
BisI GCNGC 1 cut(s) 390
BlsI GCNGC 1 cut(s) 391
BmgT120I GGNCC 1 cut(s) 144
BmiI GGNNCC 1 cut(s) 61
BpuEI CTTGAG 1 cut(s) 271
BsaAI YACGTR 1 cut(s) 216
BsaHI GRCGYC 1 cut(s) 189
BsaJI CCNNGG 2 cut(s) 201, 278
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 207
Bse3DI GCAATG 1 cut(s) 63
BseDI CCNNGG 2 cut(s) 201, 278
BseGI GGATG 1 cut(s) 274
BseLI CCNNNNNNNGG 2 cut(s) 56, 207
BseMI GCAATG 1 cut(s) 63
BseRI GAGGAG 2 cut(s) 419, 422
BseXI GCAGC 1 cut(s) 401
BsgI GTGCAG 1 cut(s) 408
Bsh1236I CGCG 1 cut(s) 384
BshFI GGCC 2 cut(s) 145, 323
BsiSI CCGG 2 cut(s) 142, 186
BslFI GGGAC 1 cut(s) 219
BslI CCNNNNNNNGG 2 cut(s) 56, 207
BsmFI GGGAC 1 cut(s) 219
BsmI GAATGC 1 cut(s) 176
BsnI GGCC 2 cut(s) 145, 323
Bsp143I GATC 2 cut(s) 44, 254
BspACI CCGC 2 cut(s) 384, 399
BspANI GGCC 2 cut(s) 145, 323
BspFNI CGCG 1 cut(s) 384
BspLI GGNNCC 1 cut(s) 61
BspPI GGATC 2 cut(s) 52, 249
BsrDI GCAATG 1 cut(s) 63
BssECI CCNNGG 2 cut(s) 201, 278
BssMI GATC 2 cut(s) 44, 254
BssNI GRCGYC 1 cut(s) 189
BssSI CACGAG 2 cut(s) 88, 393
BssT1I CCWWGG 1 cut(s) 201
Bst2BI CACGAG 2 cut(s) 88, 393
BstACI GRCGYC 1 cut(s) 189
BstAPI GCANNNNNTGC 1 cut(s) 229
BstBAI YACGTR 1 cut(s) 216
BstC8I GCNNGC 1 cut(s) 110
BstDSI CCRYGG 1 cut(s) 278
BstF5I GGATG 1 cut(s) 274
BstFNI CGCG 1 cut(s) 384
BstKTI GATC 2 cut(s) 47, 257
BstMBI GATC 2 cut(s) 44, 254
BstMWI GCNNNNNNNGC 2 cut(s) 74, 229
BstNSI RCATGY 3 cut(s) 112, 160, 223
BstSFI CTRYAG 1 cut(s) 364
BstSNI TACGTA 1 cut(s) 216
BstUI CGCG 1 cut(s) 384
BstV1I GCAGC 1 cut(s) 401
BstX2I RGATCY 2 cut(s) 44, 254
BstYI RGATCY 2 cut(s) 44, 254
BsuRI GGCC 2 cut(s) 145, 323
BtgI CCRYGG 1 cut(s) 278
BtsCI GGATG 1 cut(s) 274
Cac8I GCNNGC 1 cut(s) 110
Cfr13I GGNCC 1 cut(s) 144
CseI GACGC 1 cut(s) 178
Csp6I GTAC 2 cut(s) 213, 217
CspCI CAANNNNNGTGG 2 cut(s) 288, 323
CviAII CATG 7 cut(s) 55, 94, 109, 157, 220, 325, 337
CviJI RGCY 5 cut(s) 62, 137, 145, 323, 392
CviKI_1 RGCY 5 cut(s) 62, 137, 145, 323, 392
CviQI GTAC 2 cut(s) 213, 217
DpnI GATC 2 cut(s) 46, 256
DpnII GATC 2 cut(s) 44, 254
EaeI YGGCCR 1 cut(s) 321
EciI GGCGGA 1 cut(s) 414
Eco105I TACGTA 1 cut(s) 216
Eco130I CCWWGG 1 cut(s) 201
EcoT14I CCWWGG 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 7 cut(s) 58, 97, 112, 160, 223, 328, 340
FaqI GGGAC 1 cut(s) 219
FatI CATG 7 cut(s) 54, 93, 108, 156, 219, 324, 336
Fnu4HI GCNGC 1 cut(s) 390
FokI GGATG 1 cut(s) 261
Fsp4HI GCNGC 1 cut(s) 390
GluI GCNGC 1 cut(s) 390
HaeIII GGCC 2 cut(s) 145, 323
HapII CCGG 2 cut(s) 142, 186
HgaI GACGC 1 cut(s) 178
Hin1I GRCGYC 1 cut(s) 189
Hin1II CATG 7 cut(s) 58, 97, 112, 160, 223, 328, 340
HinfI GANTC 3 cut(s) 236, 344, 358
HpaII CCGG 2 cut(s) 142, 186
HphI GGTGA 1 cut(s) 43
Hpy166II GTNNAC 1 cut(s) 343
Hpy188I TCNGA 1 cut(s) 259
Hpy188III TCNNGA 1 cut(s) 88
Hpy8I GTNNAC 1 cut(s) 343
HpyCH4IV ACGT 3 cut(s) 215, 225, 302
HpyCH4V TGCA 3 cut(s) 108, 223, 389
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 229
HpySE526I ACGT 3 cut(s) 215, 225, 302
Hsp92I GRCGYC 1 cut(s) 189
Hsp92II CATG 7 cut(s) 58, 97, 112, 160, 223, 328, 340
Kzo9I GATC 2 cut(s) 44, 254
LmnI GCTCC 1 cut(s) 59
LpnPI CCDG 2 cut(s) 155, 199
Lsp1109I GCAGC 1 cut(s) 401
MaeII ACGT 3 cut(s) 215, 225, 302
MaeIII GTNAC 2 cut(s) 85, 359
MalI GATC 2 cut(s) 46, 256
MboI GATC 2 cut(s) 44, 254
MboII GAAGA 1 cut(s) 160
MflI RGATCY 2 cut(s) 44, 254
MluCI AATT 1 cut(s) 34
MlyI GAGTC 3 cut(s) 230, 338, 367
MnlI CCTC 4 cut(s) 193, 276, 397, 400
MslI CAYNNNNRTG 3 cut(s) 92, 113, 335
MspI CCGG 2 cut(s) 142, 186
Mva1269I GAATGC 1 cut(s) 176
MvnI CGCG 1 cut(s) 384
MwoI GCNNNNNNNGC 2 cut(s) 74, 229
NdeII GATC 2 cut(s) 44, 254
NlaIII CATG 7 cut(s) 58, 97, 112, 160, 223, 328, 340
NlaIV GGNNCC 1 cut(s) 61
NmuCI GTSAC 2 cut(s) 85, 359
NspI RCATGY 3 cut(s) 112, 160, 223
PaeI GCATGC 1 cut(s) 112
PciI ACATGT 1 cut(s) 156
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PctI GAATGC 1 cut(s) 176
PkrI GCNGC 1 cut(s) 391
PleI GAGTC 3 cut(s) 230, 338, 366
PpsI GAGTC 3 cut(s) 230, 338, 366
Ppu21I YACGTR 1 cut(s) 216
PscI ACATGT 1 cut(s) 156
Psp1406I AACGTT 1 cut(s) 302
PspN4I GGNNCC 1 cut(s) 61
PspPI GGNCC 1 cut(s) 144
PsuI RGATCY 2 cut(s) 44, 254
RsaI GTAC 2 cut(s) 214, 218
RsaNI GTAC 2 cut(s) 213, 217
RseI CAYNNNNRTG 3 cut(s) 92, 113, 335
SatI GCNGC 1 cut(s) 390
Sau3AI GATC 2 cut(s) 44, 254
Sau96I GGNCC 1 cut(s) 144
SchI GAGTC 3 cut(s) 230, 338, 367
SetI ASST 5 cut(s) 132, 218, 228, 305, 394
SfcI CTRYAG 1 cut(s) 364
SmiMI CAYNNNNRTG 3 cut(s) 92, 113, 335
SmlI CTYRAG 1 cut(s) 250
SmoI CTYRAG 1 cut(s) 250
SnaBI TACGTA 1 cut(s) 216
SphI GCATGC 1 cut(s) 112
Sse9I AATT 1 cut(s) 34
SsiI CCGC 2 cut(s) 384, 399
SspI AATATT 1 cut(s) 374
StyI CCWWGG 1 cut(s) 201
TaiI ACGT 3 cut(s) 218, 228, 305
TaqI TCGA 1 cut(s) 353
TasI AATT 1 cut(s) 34
TseFI GTSAC 2 cut(s) 85, 359
TseI GCWGC 1 cut(s) 389
Tsp45I GTSAC 2 cut(s) 85, 359
TspDTI ATGAA 1 cut(s) 43
TspGWI ACGGA 1 cut(s) 267
XapI RAATTY 1 cut(s) 34
XceI RCATGY 3 cut(s) 112, 160, 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.