MD13G1054100.v1.1

) transport protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0010761
Physical Location & Seq
Reverse (-)
3804313 .. 3806051
1739 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1054100.v1.1.491

Sequence Viewer

Length: 1056 bp
ATGGCTGCCAAACTCCACGCCCTCGCCGTCATCCTCCTCCTCATCAGCATTGCCGTCAATGCAGCCGCCGAGGAACCACAACAATGCGGGTCCAAATCCAAAGGACAATGCCACGACAAATCCAAGGCCTTGATCCTGAAGATCATTGCTTTATTTGCCATTTTGGTCACGAGCATGATTGGTGTCTGCTTGCCGATGTTTTCACGCAAGGTTTCGGCTCTCCAACCCGGCAAAAACATGTTCGTCATTGTCAAAGCGTTCGCCTCTGGTGTCATACTTGCCACCGGGTTCATGCACGTTTTGCCCGACTCGTTCGATTGCTTGACATCCGAGTGCTTGCCCGAACATCCGTGGAGCAAGTTTCCGTTCACAACGTTCGTGGCAATGCTTTCAGCCGTTCTTACTCTCATGGTGGACTCGTTTTCGATGAGTCACTATAGGAAATATTTAGTTCGCGGTGCAGCTCGCGGCGAAGATGAGGAGAACGCCAAAAATAGCTCTTCTCAAATAGAGCCTTTTGGGCATGGTCATGACATTAAGACTGAAGAGGGACTCGACGATAAGGATTCACAGTTGTTGAGATATCGTGTTGTGGCACAGGTATTGGAACTAGGAATTGTAGTGCACTCGGTAGTGATTGGATTATCAATGGGGGCATCTGATAATCCATGCACAATCAGACCACTCATTGCTGCCCTTTGCTTCCATCAACTATTTGAAGGGATGGGTCTTGGCGGATGCATACTACAGGCTGAATATGGTATGAAGATGAAAGCAACAATGGTGTTCTTCTTCTCAGCCACGACACCATTTGGGATAGCACTAGGGATTGCACTGTCACATATATACAGTGACAACAGTCCGACGGCTCTGATTGTGGTCGGGTTGCTAAATGCTGCATCTGCAGGGCTGCTCAACTATATGGCGCTGGTGGATCTCCTAGCAGCTGATTTCATGGGGACTAAATTGCAAGCAAATGTGAAGCTCCAAATGTTGTCTTATATTGCAGTTCTTTTTGGGGCAGGAGGCATGTCAGTAATGGCCATATGGGCTTAG

Protein Analysis

352

Amino Acids

37.62

Weight (kDa)

6.78

Isoelectric Point (pI)

40.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 45 - 348 3.3e-79 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010761)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04032
fragaria_vesca FvH4_4g28790 FvH4_4g28790 FvH4_5g31650
malus_domestica MD13G1054100.v1.1 MD15G1116800.v1.1 MD16G1052500.v1.1
prunus_persica Prupe.1G298100_v2.0.a1
pyrus_communis pycom13g04810 pycom15g10520
rosa_chinensis RchiOBHm_Chr4g0436921
rosa_laevigata RLG00000006486
rosa_multiflora Rmu_sc0001464.1_g000008
rosa_roxburghii Rroxscaffold_5G00377990
rosa_rugosa Rorug04G0297400
rosa_samantha Rh4AG351700 Rh4BG360700 Rh4CG375000 Rh4DG354900
rosa_wichuraiana Rw4G030780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 456, 468
AciI CCGC 5 cut(s) 66, 87, 456, 468, 735
AclI AACGTT 1 cut(s) 374
AclWI GGATC 2 cut(s) 127, 942
AcoI YGGCCR 1 cut(s) 1041
AcuI CTGAAG 2 cut(s) 158, 564
AflIII ACRYGT 1 cut(s) 237
AgsI TTSAA 1 cut(s) 719
AluBI AGCT 4 cut(s) 464, 498, 947, 985
AluI AGCT 4 cut(s) 464, 498, 947, 985
Alw21I GWGCWC 1 cut(s) 627
Alw44I GTGCAC 1 cut(s) 623
AlwI GGATC 2 cut(s) 127, 942
AoxI GGCC 2 cut(s) 126, 1041
ApaLI GTGCAC 1 cut(s) 623
ApeKI GCWGC 7 cut(s) 5, 62, 461, 692, 896, 910, 944
AspLEI GCGC 1 cut(s) 928
AspS9I GGNCC 1 cut(s) 90
AsuC2I CCSGG 2 cut(s) 228, 286
AvaII GGWCC 1 cut(s) 90
BaeGI GKGCMC 1 cut(s) 627
BalI TGGCCA 1 cut(s) 1043
BauI CACGAG 1 cut(s) 169
Bbv12I GWGCWC 1 cut(s) 627
BbvI GCAGC 6 cut(s) 74, 473, 679, 883, 897, 956
BccI CCATC 2 cut(s) 714, 718
BceAI ACGGC 4 cut(s) 11, 38, 380, 882
BcnI CCSGG 2 cut(s) 228, 286
BfaI CTAG 3 cut(s) 611, 824, 941
BfmI CTRYAG 3 cut(s) 436, 746, 903
BfoI RGCGCY 1 cut(s) 929
BglI GCCNNNNNGGC 2 cut(s) 520, 1049
BisI GCNGC 9 cut(s) 6, 63, 66, 462, 469, 693, 897, 911, 945
BlsI GCNGC 9 cut(s) 7, 64, 67, 463, 470, 694, 898, 912, 946
Bme1390I CCNGG 2 cut(s) 228, 286
Bme18I GGWCC 1 cut(s) 90
BmgT120I GGNCC 1 cut(s) 90
BmiI GGNNCC 2 cut(s) 75, 91
BmrFI CCNGG 2 cut(s) 228, 286
BmsI GCATC 3 cut(s) 665, 728, 908
BoxI GACNNNNGTC 1 cut(s) 858
BpuMI CCSGG 2 cut(s) 228, 286
BsaJI CCNNGG 3 cut(s) 69, 123, 350
Bse3DI GCAATG 4 cut(s) 48, 144, 390, 687
BseDI CCNNGG 3 cut(s) 69, 123, 350
BseGI GGATG 5 cut(s) 30, 326, 346, 729, 743
BseMI GCAATG 4 cut(s) 48, 144, 390, 687
BseMII CTCAG 1 cut(s) 810
BseRI GAGGAG 3 cut(s) 26, 29, 494
BseSI GKGCMC 1 cut(s) 627
BseXI GCAGC 6 cut(s) 74, 473, 679, 883, 897, 956
BsgI GTGCAG 1 cut(s) 480
Bsh1236I CGCG 2 cut(s) 456, 468
BshFI GGCC 2 cut(s) 128, 1043
BsiHKAI GWGCWC 1 cut(s) 627
BsiSI CCGG 2 cut(s) 228, 285
BslFI GGGAC 2 cut(s) 564, 973
BsmFI GGGAC 2 cut(s) 564, 973
BsnI GGCC 2 cut(s) 128, 1043
Bsp1286I GDGCHC 1 cut(s) 627
Bsp143I GATC 3 cut(s) 132, 141, 934
BspACI CCGC 5 cut(s) 66, 87, 456, 468, 735
BspANI GGCC 2 cut(s) 128, 1043
BspCNI CTCAG 1 cut(s) 809
BspFNI CGCG 2 cut(s) 456, 468
BspHI TCATGA 1 cut(s) 529
BspLI GGNNCC 2 cut(s) 75, 91
BspMAI CTGCAG 1 cut(s) 907
BspPI GGATC 2 cut(s) 127, 942
BspQI GCTCTTC 1 cut(s) 505
BsrDI GCAATG 4 cut(s) 48, 144, 390, 687
BssECI CCNNGG 3 cut(s) 69, 123, 350
BssMI GATC 3 cut(s) 132, 141, 934
BssSI CACGAG 1 cut(s) 169
BssT1I CCWWGG 1 cut(s) 123
Bst2BI CACGAG 1 cut(s) 169
Bst4CI ACNGT 4 cut(s) 573, 837, 851, 860
Bst6I CTCTTC 2 cut(s) 505, 540
BstAPI GCANNNNNTGC 1 cut(s) 301
BstC8I GCNNGC 4 cut(s) 191, 338, 466, 972
BstDEI CTNAG 2 cut(s) 796, 1053
BstDSI CCRYGG 1 cut(s) 350
BstF5I GGATG 5 cut(s) 30, 326, 346, 729, 743
BstFNI CGCG 2 cut(s) 456, 468
BstH2I RGCGCY 1 cut(s) 929
BstHHI GCGC 1 cut(s) 928
BstKTI GATC 3 cut(s) 135, 144, 937
BstMBI GATC 3 cut(s) 132, 141, 934
BstMWI GCNNNNNNNGC 6 cut(s) 59, 155, 301, 520, 902, 1049
BstNSI RCATGY 2 cut(s) 241, 1033
BstPAI GACNNNNGTC 1 cut(s) 858
BstSCI CCNGG 2 cut(s) 226, 284
BstSFI CTRYAG 3 cut(s) 436, 746, 903
BstSLI GKGCMC 1 cut(s) 627
BstUI CGCG 2 cut(s) 456, 468
BstV1I GCAGC 6 cut(s) 74, 473, 679, 883, 897, 956
BstX2I RGATCY 1 cut(s) 934
BstYI RGATCY 1 cut(s) 934
BsuRI GGCC 2 cut(s) 128, 1043
BtgI CCRYGG 1 cut(s) 350
BtsCI GGATG 5 cut(s) 30, 326, 346, 729, 743
BtsIMutI CAGTG 2 cut(s) 833, 856
Cac8I GCNNGC 4 cut(s) 191, 338, 466, 972
CciI TCATGA 1 cut(s) 529
CfoI GCGC 1 cut(s) 928
Cfr13I GGNCC 1 cut(s) 90
CspCI CAANNNNNGTGG 2 cut(s) 360, 395
CviAII CATG 9 cut(s) 175, 238, 292, 409, 524, 530, 669, 955, 1030
DdeI CTNAG 2 cut(s) 796, 1053
DpnI GATC 3 cut(s) 134, 143, 936
DpnII GATC 3 cut(s) 132, 141, 934
EaeI YGGCCR 1 cut(s) 1041
Eam1104I CTCTTC 2 cut(s) 505, 540
EarI CTCTTC 2 cut(s) 505, 540
EciI GGCGGA 1 cut(s) 750
Eco130I CCWWGG 1 cut(s) 123
Eco147I AGGCCT 1 cut(s) 128
Eco32I GATATC 1 cut(s) 584
Eco47I GGWCC 1 cut(s) 90
Eco57I CTGAAG 2 cut(s) 158, 564
EcoRV GATATC 1 cut(s) 584
EcoT14I CCWWGG 1 cut(s) 123
EcoT22I ATGCAT 1 cut(s) 743
ErhI CCWWGG 1 cut(s) 123
FaeI CATG 9 cut(s) 178, 241, 295, 412, 527, 533, 672, 958, 1033
FaqI GGGAC 2 cut(s) 564, 973
FatI CATG 9 cut(s) 174, 237, 291, 408, 523, 529, 668, 954, 1029
FauI CCCGC 1 cut(s) 80
FauNDI CATATG 1 cut(s) 1046
Fnu4HI GCNGC 9 cut(s) 6, 63, 66, 462, 469, 693, 897, 911, 945
FokI GGATG 5 cut(s) 17, 313, 333, 736, 750
Fsp4HI GCNGC 9 cut(s) 6, 63, 66, 462, 469, 693, 897, 911, 945
FspBI CTAG 3 cut(s) 611, 824, 941
GlaI GCGC 1 cut(s) 927
GluI GCNGC 9 cut(s) 6, 63, 66, 462, 469, 693, 897, 911, 945
HaeII RGCGCY 1 cut(s) 929
HaeIII GGCC 2 cut(s) 128, 1043
HapII CCGG 2 cut(s) 228, 285
HhaI GCGC 1 cut(s) 928
Hin1II CATG 9 cut(s) 178, 241, 295, 412, 527, 533, 672, 958, 1033
Hin6I GCGC 1 cut(s) 926
HinP1I GCGC 1 cut(s) 926
HinfI GANTC 5 cut(s) 308, 416, 430, 552, 566
HpaII CCGG 2 cut(s) 228, 285
Hpy166II GTNNAC 3 cut(s) 369, 415, 625
Hpy188I TCNGA 5 cut(s) 331, 661, 680, 864, 873
Hpy188III TCNNGA 3 cut(s) 136, 169, 530
Hpy8I GTNNAC 3 cut(s) 369, 415, 625
Hpy99I CGWCG 2 cut(s) 560, 868
HpyAV CCTTC 1 cut(s) 713
HpyCH4III ACNGT 4 cut(s) 573, 837, 851, 860
HpyCH4IV ACGT 2 cut(s) 297, 374
HpyF10VI GCNNNNNNNGC 6 cut(s) 59, 155, 301, 520, 902, 1049
HpyF3I CTNAG 2 cut(s) 796, 1053
HpySE526I ACGT 2 cut(s) 297, 374
Hsp92II CATG 9 cut(s) 178, 241, 295, 412, 527, 533, 672, 958, 1033
HspAI GCGC 1 cut(s) 926
Kzo9I GATC 3 cut(s) 132, 141, 934
LguI GCTCTTC 1 cut(s) 505
LmnI GCTCC 2 cut(s) 354, 990
LpnPI CCDG 9 cut(s) 149, 241, 252, 298, 584, 734, 891, 914, 1008
Lsp1109I GCAGC 6 cut(s) 74, 473, 679, 883, 897, 956
LweI GCATC 3 cut(s) 665, 728, 908
MaeI CTAG 3 cut(s) 611, 824, 941
MaeII ACGT 2 cut(s) 297, 374
MaeIII GTNAC 4 cut(s) 166, 431, 837, 851
MalI GATC 3 cut(s) 134, 143, 936
MboI GATC 3 cut(s) 132, 141, 934
MboII GAAGA 7 cut(s) 151, 485, 492, 557, 778, 781, 784
MflI RGATCY 1 cut(s) 934
MhlI GDGCHC 1 cut(s) 627
MlsI TGGCCA 1 cut(s) 1043
MluCI AATT 2 cut(s) 615, 965
MluNI TGGCCA 1 cut(s) 1043
MlyI GAGTC 4 cut(s) 302, 410, 439, 546
MmeI TCCRAC 2 cut(s) 247, 887
MnlI CCTC 9 cut(s) 32, 44, 47, 50, 64, 274, 472, 541, 1019
Mox20I TGGCCA 1 cut(s) 1043
Mph1103I ATGCAT 1 cut(s) 743
MscI TGGCCA 1 cut(s) 1043
MseI TTAA 1 cut(s) 537
MslI CAYNNNNRTG 4 cut(s) 82, 173, 331, 528
Msp20I TGGCCA 1 cut(s) 1043
MspA1I CMGCKG 1 cut(s) 947
MspI CCGG 2 cut(s) 228, 285
MspR9I CCNGG 2 cut(s) 228, 286
MvnI CGCG 2 cut(s) 456, 468
MwoI GCNNNNNNNGC 6 cut(s) 59, 155, 301, 520, 902, 1049
NciI CCSGG 2 cut(s) 228, 286
NdeI CATATG 1 cut(s) 1046
NdeII GATC 3 cut(s) 132, 141, 934
NlaIII CATG 9 cut(s) 178, 241, 295, 412, 527, 533, 672, 958, 1033
NlaIV GGNNCC 2 cut(s) 75, 91
NmeAIII GCCGAG 1 cut(s) 94
NmuCI GTSAC 4 cut(s) 166, 431, 837, 851
NsiI ATGCAT 1 cut(s) 743
NspI RCATGY 2 cut(s) 241, 1033
PagI TCATGA 1 cut(s) 529
PceI AGGCCT 1 cut(s) 128
PciI ACATGT 1 cut(s) 237
PciSI GCTCTTC 1 cut(s) 505
PcsI WCGNNNNNNNCGW 2 cut(s) 24, 303
PfeI GAWTC 1 cut(s) 566
PkrI GCNGC 9 cut(s) 7, 64, 67, 463, 470, 694, 898, 912, 946
PleI GAGTC 4 cut(s) 302, 410, 438, 546
PpsI GAGTC 4 cut(s) 302, 410, 438, 546
PscI ACATGT 1 cut(s) 237
PshAI GACNNNNGTC 1 cut(s) 858
Psp1406I AACGTT 1 cut(s) 374
PspN4I GGNNCC 2 cut(s) 75, 91
PspPI GGNCC 1 cut(s) 90
PstI CTGCAG 1 cut(s) 907
PsuI RGATCY 1 cut(s) 934
PvuII CAGCTG 1 cut(s) 947
RseI CAYNNNNRTG 4 cut(s) 82, 173, 331, 528
SapI GCTCTTC 1 cut(s) 505
SaqAI TTAA 1 cut(s) 537
SatI GCNGC 9 cut(s) 6, 63, 66, 462, 469, 693, 897, 911, 945
Sau3AI GATC 3 cut(s) 132, 141, 934
Sau96I GGNCC 1 cut(s) 90
SchI GAGTC 4 cut(s) 302, 410, 439, 546
ScrFI CCNGG 2 cut(s) 228, 286
SduI GDGCHC 1 cut(s) 627
SetI ASST 8 cut(s) 213, 300, 377, 466, 500, 603, 949, 987
SfaNI GCATC 3 cut(s) 665, 728, 908
SfcI CTRYAG 3 cut(s) 436, 746, 903
SinI GGWCC 1 cut(s) 90
SmiMI CAYNNNNRTG 4 cut(s) 82, 173, 331, 528
Sse9I AATT 2 cut(s) 615, 965
SseBI AGGCCT 1 cut(s) 128
SsiI CCGC 5 cut(s) 66, 87, 456, 468, 735
SspI AATATT 1 cut(s) 446
SspMI CTAG 3 cut(s) 611, 824, 941
StuI AGGCCT 1 cut(s) 128
StyD4I CCNGG 2 cut(s) 226, 284
StyI CCWWGG 1 cut(s) 123
TaaI ACNGT 4 cut(s) 573, 837, 851, 860
TaiI ACGT 2 cut(s) 300, 377
TaqI TCGA 3 cut(s) 315, 425, 555
TasI AATT 2 cut(s) 615, 965
TauI GCSGC 2 cut(s) 68, 471
TfiI GAWTC 1 cut(s) 566
Tru1I TTAA 1 cut(s) 537
Tru9I TTAA 1 cut(s) 537
TscAI CASTG 2 cut(s) 840, 856
TseFI GTSAC 4 cut(s) 166, 431, 837, 851
TseI GCWGC 7 cut(s) 5, 62, 461, 692, 896, 910, 944
Tsp45I GTSAC 4 cut(s) 166, 431, 837, 851
TspDTI ATGAA 4 cut(s) 280, 779, 785, 943
TspGWI ACGGA 2 cut(s) 339, 354
TspRI CASTG 2 cut(s) 840, 856
VneI GTGCAC 1 cut(s) 623
VpaK11BI GGWCC 1 cut(s) 90
XceI RCATGY 2 cut(s) 241, 1033
XspI CTAG 3 cut(s) 611, 824, 941
Zsp2I ATGCAT 1 cut(s) 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.