FvH4_4g29980

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0013194
Physical Location & Seq
Reverse (-)
29846798 .. 29849766
2969 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g29980.t1

Sequence Viewer

Length: 1131 bp
ATGGAGGAGTTGCTAAACAACAAGATTTTTGCAACGCATGCACTTGCTGGTGTAGGATCAGTGGCATTAGGCACAGCTGTTACTTACCCCCTAGATACTGTCAAAGTCATTATTCAGGCAGGTTCAAGTTCGAGTAAACAGTTGACGACTACTGAGGTTTTCAACAGAGTTCAGTCATTTTCGGGGACCTCAGGATTGTACAGTGGTTTCTGGTGGTTGGCAGTGGGAAGAACTTTAGGTGTTGGAGCTCGCTTTGGAATCTATGAAATTTTGACGGCTTTCTACAAAGATGGTCGAGAAGATAACCACGTACATGCCTCTGAGGCACTCTTAGCAGGACTCATTGCTGGTTTTGCAGAATCACTAATAACCTCTCCCTTTGAACTTATAAAAGTTCGTGCCCAGATCACTTCTGCTTCCCACATTCCAAAGTCGGCCTCTCTCAGAAAGAAGGTAGCTGTTGCACCTTTGATACAAAAGTTACTACATGGATTCACTCCAGACACAAAGGCACTAAACTATTCTGTCAGTCTTTTATCCACCCTAACAAGTAAACATCCCAATATGATGACTGCCTTACAAGACTATCCATGGATGATGACTGGTTCTGGGAAGCCGCCATCTGTGGTTAGTGTTAGGAAACCACCTGAAATCATCTCTTTGGAAGGATGGGGATCATTATGGAGAGGTCTACGGTCAGGAGTTGTTCGAGATTCAGTTTTCAGCGGCTTTTTCTTTGGTACTTGGCAATCCCTGCACAGAGCCATGCTTGATTGGAAGGCAGTGGGGATGCATCCAGAACCCAGGACGGATGATGAAATTGGTCCATTGTCACCTTTCGCTGTTAGTGTTGCCGCTGGAGTTTCTGGTTCAGTTGCCGCAGCTGCTTCTCATTGTTTTGACACTGCCAAGTGCCGATCACAATGTGTTGTCCTCCCCAAGTTTCTCTCCATGGAAAGGAAGCTTCTGAAATGGAAAACACCAGGGAAAAGGTTCGAGAGAGCAACAGGCATCCACCCTGCCGACAGGAATCTCCTCTTCCGCGGCATTGGCTTGCGCATGGCTCGCAGTGGCATTGCATCATTCGTAATGGTGGGAAGCTATTTCCTGGCTGTGGATCGTCTCGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

377

Amino Acids

40.73

Weight (kDa)

9.85

Isoelectric Point (pI)

32.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 10 - 96 3.6e-13 Mitochondrial carrier protein
Mito_carr PF00153 104 - 145 1.7e-06 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15010 AT4G15010 AT4G15010
fragaria_vesca FvH4_4g29980
malus_domestica MD13G1062400.v1.1 MD16G1060700.v1.1
prunus_persica Prupe.1G287600_v2.0.a1
pyrus_communis pycom13g05480 pycom16g05290
rosa_chinensis RchiOBHm_Chr4g0438261
rosa_laevigata RLG00000006376
rosa_roxburghii Rroxscaffold_5G00379350
rosa_rugosa Rorug04G0308300
rosa_samantha Rh4AG359500 Rh4BG370300 Rh4CG384500
rosa_wichuraiana Rw0G006410 Rw0G016350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 389
Acc16I TGCGCA 1 cut(s) 1058
Acc36I ACCTGC 1 cut(s) 110
AccI GTMKAC 1 cut(s) 691
AccII CGCG 1 cut(s) 1044
AciI CCGC 6 cut(s) 617, 726, 855, 879, 1042, 1044
AclWI GGATC 3 cut(s) 64, 682, 1125
AcsI RAATTY 1 cut(s) 267
AdeI CACNNNGTG 1 cut(s) 926
AfaI GTAC 3 cut(s) 200, 312, 742
AfiI CCNNNNNNNGG 2 cut(s) 957, 1114
AgsI TTSAA 3 cut(s) 126, 163, 383
AjnI CCWGG 3 cut(s) 803, 982, 1107
AluBI AGCT 6 cut(s) 77, 248, 458, 884, 964, 1101
AluI AGCT 6 cut(s) 77, 248, 458, 884, 964, 1101
Alw21I GWGCWC 1 cut(s) 250
Alw26I GTCTC 1 cut(s) 1127
AlwI GGATC 3 cut(s) 64, 682, 1125
AoxI GGCC 1 cut(s) 435
ApeKI GCWGC 2 cut(s) 881, 884
ApoI RAATTY 1 cut(s) 267
Asp700I GAANNNNTTC 1 cut(s) 992
AspLEI GCGC 1 cut(s) 1059
AspS9I GGNCC 2 cut(s) 186, 824
AsuHPI GGTGA 1 cut(s) 825
AvaII GGWCC 2 cut(s) 186, 824
AxyI CCTNAGG 1 cut(s) 190
BaeGI GKGCMC 1 cut(s) 403
BaeI ACNNNNGTAYC 2 cut(s) 464, 497
BanII GRGCYC 1 cut(s) 250
Bbv12I GWGCWC 1 cut(s) 250
BbvI GCAGC 2 cut(s) 871, 893
BccI CCATC 3 cut(s) 284, 628, 663
BceAI ACGGC 1 cut(s) 291
BciT130I CCWGG 3 cut(s) 805, 984, 1109
BcoDI GTCTC 1 cut(s) 1127
BfaI CTAG 1 cut(s) 92
BfuAI ACCTGC 1 cut(s) 110
BglI GCCNNNNNGGC 1 cut(s) 323
BisI GCNGC 7 cut(s) 617, 727, 855, 879, 882, 885, 1045
BlsI GCNGC 7 cut(s) 618, 728, 856, 880, 883, 886, 1046
Bme1390I CCNGG 3 cut(s) 805, 984, 1109
Bme18I GGWCC 2 cut(s) 186, 824
BmgT120I GGNCC 2 cut(s) 186, 824
BmiI GGNNCC 1 cut(s) 187
BmrFI CCNGG 3 cut(s) 805, 984, 1109
BmsI GCATC 4 cut(s) 780, 802, 1020, 1088
BpmI CTGGAG 2 cut(s) 483, 879
BsaAI YACGTR 1 cut(s) 310
BsaBI GATNNNNATC 1 cut(s) 673
BsaJI CCNNGG 5 cut(s) 590, 803, 951, 983, 1042
Bsc4I CCNNNNNNNGG 2 cut(s) 957, 1114
Bse1I ACTGG 1 cut(s) 607
Bse21I CCTNAGG 1 cut(s) 190
Bse3DI GCAATG 2 cut(s) 342, 1074
Bse8I GATNNNNATC 1 cut(s) 673
BseBI CCWGG 3 cut(s) 805, 984, 1109
BseDI CCNNGG 5 cut(s) 590, 803, 951, 983, 1042
BseGI GGATG 7 cut(s) 556, 600, 674, 793, 795, 817, 1011
BseJI GATNNNNATC 1 cut(s) 673
BseLI CCNNNNNNNGG 2 cut(s) 957, 1114
BseMI GCAATG 2 cut(s) 342, 1074
BseMII CTCAG 4 cut(s) 144, 204, 312, 457
BseNI ACTGG 1 cut(s) 607
BseRI GAGGAG 2 cut(s) 20, 1025
BseSI GKGCMC 1 cut(s) 403
BseXI GCAGC 2 cut(s) 871, 893
BsgI GTGCAG 1 cut(s) 740
Bsh1236I CGCG 1 cut(s) 1044
BshFI GGCC 1 cut(s) 437
BsiHKAI GWGCWC 1 cut(s) 250
BslFI GGGAC 1 cut(s) 199
BslI CCNNNNNNNGG 2 cut(s) 957, 1114
BsmAI GTCTC 1 cut(s) 1127
BsmBI CGTCTC 1 cut(s) 1127
BsmFI GGGAC 1 cut(s) 199
BsnI GGCC 1 cut(s) 437
Bsp1286I GDGCHC 2 cut(s) 250, 403
Bsp1407I TGTACA 1 cut(s) 198
Bsp143I GATC 5 cut(s) 56, 405, 674, 917, 1117
Bsp19I CCATGG 2 cut(s) 590, 951
BspACI CCGC 6 cut(s) 617, 726, 855, 879, 1042, 1044
BspANI GGCC 1 cut(s) 437
BspCNI CTCAG 4 cut(s) 145, 203, 313, 456
BspFNI CGCG 1 cut(s) 1044
BspLI GGNNCC 1 cut(s) 187
BspMI ACCTGC 1 cut(s) 110
BspPI GGATC 3 cut(s) 64, 682, 1125
BsrDI GCAATG 2 cut(s) 342, 1074
BsrGI TGTACA 1 cut(s) 198
BsrI ACTGG 1 cut(s) 607
BssECI CCNNGG 5 cut(s) 590, 803, 951, 983, 1042
BssMI GATC 5 cut(s) 56, 405, 674, 917, 1117
BssT1I CCWWGG 2 cut(s) 590, 951
Bst2UI CCWGG 3 cut(s) 805, 984, 1109
Bst4CI ACNGT 4 cut(s) 100, 141, 203, 696
Bst6I CTCTTC 1 cut(s) 1043
BstAPI GCANNNNNTGC 2 cut(s) 38, 754
BstAUI TGTACA 1 cut(s) 198
BstBAI YACGTR 1 cut(s) 310
BstC8I GCNNGC 4 cut(s) 39, 250, 1055, 1066
BstDEI CTNAG 5 cut(s) 153, 190, 321, 331, 443
BstDSI CCRYGG 3 cut(s) 590, 951, 1042
BstF5I GGATG 7 cut(s) 556, 600, 674, 793, 795, 817, 1011
BstFNI CGCG 1 cut(s) 1044
BstHHI GCGC 1 cut(s) 1059
BstKTI GATC 5 cut(s) 59, 408, 677, 920, 1120
BstMAI GTCTC 1 cut(s) 1127
BstMBI GATC 5 cut(s) 56, 405, 674, 917, 1117
BstMWI GCNNNNNNNGC 8 cut(s) 38, 323, 332, 353, 754, 884, 1050, 1065
BstNI CCWGG 3 cut(s) 805, 984, 1109
BstNSI RCATGY 2 cut(s) 41, 317
BstSCI CCNGG 3 cut(s) 803, 982, 1107
BstSLI GKGCMC 1 cut(s) 403
BstUI CGCG 1 cut(s) 1044
BstV1I GCAGC 2 cut(s) 871, 893
Bsu36I CCTNAGG 1 cut(s) 190
BsuRI GGCC 1 cut(s) 437
BtgI CCRYGG 3 cut(s) 590, 951, 1042
BtsCI GGATG 7 cut(s) 556, 600, 674, 793, 795, 817, 1011
BtsI GCAGTG 4 cut(s) 228, 789, 903, 1075
BtsIMutI CAGTG 6 cut(s) 66, 208, 228, 789, 903, 1075
BveI ACCTGC 1 cut(s) 110
Cac8I GCNNGC 4 cut(s) 39, 250, 1055, 1066
CfoI GCGC 1 cut(s) 1059
Cfr13I GGNCC 2 cut(s) 186, 824
Cfr42I CCGCGG 1 cut(s) 1045
Csp6I GTAC 3 cut(s) 199, 311, 741
CviAII CATG 7 cut(s) 38, 314, 488, 591, 766, 952, 1060
CviQI GTAC 3 cut(s) 199, 311, 741
DdeI CTNAG 5 cut(s) 153, 190, 321, 331, 443
DpnI GATC 5 cut(s) 58, 407, 676, 919, 1119
DpnII GATC 5 cut(s) 56, 405, 674, 917, 1117
DraIII CACNNNGTG 1 cut(s) 926
Eam1104I CTCTTC 1 cut(s) 1043
EarI CTCTTC 1 cut(s) 1043
Ecl136II GAGCTC 1 cut(s) 248
Eco130I CCWWGG 2 cut(s) 590, 951
Eco24I GRGCYC 1 cut(s) 250
Eco47I GGWCC 2 cut(s) 186, 824
Eco53kI GAGCTC 1 cut(s) 248
Eco81I CCTNAGG 1 cut(s) 190
EcoICRI GAGCTC 1 cut(s) 248
EcoO109I RGGNCCY 1 cut(s) 186
EcoRII CCWGG 3 cut(s) 803, 982, 1107
EcoT14I CCWWGG 2 cut(s) 590, 951
EcoT22I ATGCAT 1 cut(s) 795
EcoT38I GRGCYC 1 cut(s) 250
ErhI CCWWGG 2 cut(s) 590, 951
Esp3I CGTCTC 1 cut(s) 1127
FaeI CATG 7 cut(s) 41, 317, 491, 594, 769, 955, 1063
FaqI GGGAC 1 cut(s) 199
FatI CATG 7 cut(s) 37, 313, 487, 590, 765, 951, 1059
FblI GTMKAC 1 cut(s) 691
Fnu4HI GCNGC 7 cut(s) 617, 727, 855, 879, 882, 885, 1045
FokI GGATG 7 cut(s) 543, 607, 681, 780, 802, 824, 998
FriOI GRGCYC 1 cut(s) 250
Fsp4HI GCNGC 7 cut(s) 617, 727, 855, 879, 882, 885, 1045
FspBI CTAG 1 cut(s) 92
FspI TGCGCA 1 cut(s) 1058
GlaI GCGC 1 cut(s) 1058
GluI GCNGC 7 cut(s) 617, 727, 855, 879, 882, 885, 1045
GsuI CTGGAG 2 cut(s) 483, 879
HaeIII GGCC 1 cut(s) 437
HhaI GCGC 1 cut(s) 1059
Hin1II CATG 7 cut(s) 41, 317, 491, 594, 769, 955, 1063
Hin6I GCGC 1 cut(s) 1057
HinP1I GCGC 1 cut(s) 1057
HincII GTYRAC 1 cut(s) 144
HindII GTYRAC 1 cut(s) 144
HindIII AAGCTT 1 cut(s) 962
HinfI GANTC 6 cut(s) 258, 339, 359, 492, 713, 1030
HphI GGTGA 1 cut(s) 825
Hpy166II GTNNAC 4 cut(s) 137, 144, 554, 692
Hpy188I TCNGA 3 cut(s) 322, 446, 969
Hpy188III TCNNGA 7 cut(s) 192, 296, 500, 699, 710, 797, 997
Hpy8I GTNNAC 4 cut(s) 137, 144, 554, 692
HpyAV CCTTC 3 cut(s) 445, 659, 772
HpyCH4III ACNGT 4 cut(s) 100, 141, 203, 696
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 7 cut(s) 32, 41, 356, 464, 757, 793, 1079
HpyF10VI GCNNNNNNNGC 8 cut(s) 38, 323, 332, 353, 754, 884, 1050, 1065
HpyF3I CTNAG 5 cut(s) 153, 190, 321, 331, 443
HpySE526I ACGT 1 cut(s) 309
Hsp92II CATG 7 cut(s) 41, 317, 491, 594, 769, 955, 1063
HspAI GCGC 1 cut(s) 1057
KspI CCGCGG 1 cut(s) 1045
Kzo9I GATC 5 cut(s) 56, 405, 674, 917, 1117
LmnI GCTCC 1 cut(s) 245
Lsp1109I GCAGC 2 cut(s) 871, 893
LweI GCATC 4 cut(s) 780, 802, 1020, 1088
MaeI CTAG 1 cut(s) 92
MaeII ACGT 1 cut(s) 309
MaeIII GTNAC 3 cut(s) 79, 480, 831
MalI GATC 5 cut(s) 58, 407, 676, 919, 1119
MboI GATC 5 cut(s) 56, 405, 674, 917, 1117
MboII GAAGA 3 cut(s) 240, 311, 1030
MhlI GDGCHC 2 cut(s) 250, 403
MluCI AATT 2 cut(s) 267, 819
MlyI GAGTC 1 cut(s) 333
MmeI TCCRAC 1 cut(s) 223
MnlI CCTC 9 cut(s) 148, 199, 316, 328, 382, 448, 680, 944, 1046
Mph1103I ATGCAT 1 cut(s) 795
MroXI GAANNNNTTC 1 cut(s) 992
MslI CAYNNNNRTG 1 cut(s) 312
MspA1I CMGCKG 5 cut(s) 77, 726, 857, 884, 1044
MspR9I CCNGG 3 cut(s) 805, 984, 1109
MvaI CCWGG 3 cut(s) 805, 984, 1109
MvnI CGCG 1 cut(s) 1044
MwoI GCNNNNNNNGC 8 cut(s) 38, 323, 332, 353, 754, 884, 1050, 1065
NcoI CCATGG 2 cut(s) 590, 951
NdeII GATC 5 cut(s) 56, 405, 674, 917, 1117
NlaIII CATG 7 cut(s) 41, 317, 491, 594, 769, 955, 1063
NlaIV GGNNCC 1 cut(s) 187
NmuCI GTSAC 1 cut(s) 831
NsbI TGCGCA 1 cut(s) 1058
NsiI ATGCAT 1 cut(s) 795
NspI RCATGY 2 cut(s) 41, 317
PaeI GCATGC 1 cut(s) 41
PdmI GAANNNNTTC 1 cut(s) 992
PfeI GAWTC 5 cut(s) 258, 359, 492, 713, 1030
PkrI GCNGC 7 cut(s) 618, 728, 856, 880, 883, 886, 1046
PleI GAGTC 1 cut(s) 333
PpsI GAGTC 1 cut(s) 333
Ppu21I YACGTR 1 cut(s) 310
PpuMI RGGWCCY 1 cut(s) 186
PsiI TTATAA 1 cut(s) 389
Psp124BI GAGCTC 1 cut(s) 250
Psp5II RGGWCCY 1 cut(s) 186
Psp6I CCWGG 3 cut(s) 803, 982, 1107
PspGI CCWGG 3 cut(s) 803, 982, 1107
PspN4I GGNNCC 1 cut(s) 187
PspPI GGNCC 2 cut(s) 186, 824
PspPPI RGGWCCY 1 cut(s) 186
PvuII CAGCTG 2 cut(s) 77, 884
RsaI GTAC 3 cut(s) 200, 312, 742
RsaNI GTAC 3 cut(s) 199, 311, 741
RseI CAYNNNNRTG 1 cut(s) 312
SacI GAGCTC 1 cut(s) 250
SacII CCGCGG 1 cut(s) 1045
SatI GCNGC 7 cut(s) 617, 727, 855, 879, 882, 885, 1045
Sau3AI GATC 5 cut(s) 56, 405, 674, 917, 1117
Sau96I GGNCC 2 cut(s) 186, 824
SchI GAGTC 1 cut(s) 333
ScrFI CCNGG 3 cut(s) 805, 984, 1109
SduI GDGCHC 2 cut(s) 250, 403
SfaNI GCATC 4 cut(s) 780, 802, 1020, 1088
Sfr303I CCGCGG 1 cut(s) 1045
SgrBI CCGCGG 1 cut(s) 1045
SinI GGWCC 2 cut(s) 186, 824
SmiMI CAYNNNNRTG 1 cut(s) 312
SphI GCATGC 1 cut(s) 41
Sse9I AATT 2 cut(s) 267, 819
SsiI CCGC 6 cut(s) 617, 726, 855, 879, 1042, 1044
SspMI CTAG 1 cut(s) 92
SstI GAGCTC 1 cut(s) 250
StyD4I CCNGG 3 cut(s) 803, 982, 1107
StyI CCWWGG 2 cut(s) 590, 951
TaaI ACNGT 4 cut(s) 100, 141, 203, 696
TaiI ACGT 1 cut(s) 312
TaqI TCGA 4 cut(s) 131, 295, 709, 996
TasI AATT 2 cut(s) 267, 819
TatI WGTACW 1 cut(s) 198
TauI GCSGC 5 cut(s) 619, 729, 857, 881, 1047
TfiI GAWTC 5 cut(s) 258, 359, 492, 713, 1030
TscAI CASTG 6 cut(s) 66, 208, 228, 789, 910, 1075
TseFI GTSAC 1 cut(s) 831
TseI GCWGC 2 cut(s) 881, 884
Tsp45I GTSAC 1 cut(s) 831
TspDTI ATGAA 2 cut(s) 279, 831
TspGWI ACGGA 1 cut(s) 824
TspRI CASTG 6 cut(s) 66, 208, 228, 789, 910, 1075
VpaK11BI GGWCC 2 cut(s) 186, 824
XapI RAATTY 1 cut(s) 267
XceI RCATGY 2 cut(s) 41, 317
XmiI GTMKAC 1 cut(s) 691
XmnI GAANNNNTTC 1 cut(s) 992
XspI CTAG 1 cut(s) 92
Zsp2I ATGCAT 1 cut(s) 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.