MD16G1060700.v1.1

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0013194
Physical Location & Seq
Reverse (-)
4346889 .. 4349448
2560 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1060700.v1.1.491

Sequence Viewer

Length: 1095 bp
ATGAACAGCGCCGGAGCCGATGGAGGAGTTGTATTTGCAATCCATGCACTTTCCGGTGTAGGGTCGGTGGCATTAGGCACAGCTCTTACTTACCCTCTTGATACAATCAAAACCCTTATTCAGGTTTTAAAGAGAGTTCGATATTTTTCAGGAAATTCAGGTTTGTACAATGGTTTTCTATGGTTAGCAGCGGGAAGAACTTTGGGGTTGGGAGCTCGTTTTGGAACATATGAAATTTTGACTGCCTTTTATAAAGATGGTAGAGCAGATAACTACGTCTACGTCTCTGAGGTCCTCCTGGCAGGACTTGTCGCTGGTGTTGCAGAATCACTAATAAGCTCTCCCTTTGATCTTATGAAACTTCATGCCCAGGTGACCTCTGCTTCTTGCATTCCAAACTCGGCCCCTCTCCCAGAAAAGGGAGCTGTTGTACCTGTGATTCAAAATTTGTTGCGTGGGTGTAGTCCAGACATGAAGGCATTAAATTCTTCTGTTGCCCTTTTATCCACCCTAACAACCAAGCATCCTAATATGACGGGTGCTTTACAAGGGTACCCATGGATGATGACAGGATCTGGGAAGCCACCCTCAGTGTTCAGTGTCAGGAAACCATCTGAAATCATCTCTTTGGAAGGATGGGGTGCATTATGGAGAGGTCTACGGCCAGGAGTTGTTCGGGATTCAGTTTTTGGTGGCATATTCTTTTCTACTTGGCAATCTCTGCACCGTGCAATGCTTGACTGGAAGGCGGTGGGGATGGATCCTGAACCCAGGTCGGATGATGAAATCGGTCCACCCTCTCCCTTGGCTGTTAGTATTGCGGCTGGAATATCTGGTTCTGTTGCTGCAGCTGCTTCTCATTGTTTGGACACTGCCAAATCTCGATCAAAATGTACCGTGCTTCCCAAGTATGTCTCGACGGAGAGGAAGCTTCTGAAATGGCAAAGAACAGGGAATAGGTTTGAGAGAGTTACAGGGATCCACCATTCAGACAGGAATCTCCTGTTCCGCAGCCTTGGGTTACGGATGGCTCGCAGCGGGATCGCATCATTGGCCATGGTCGGAAGTTATTTCTTGGCTGTGGATCTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

365

Amino Acids

38.85

Weight (kDa)

9.64

Isoelectric Point (pI)

33.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15010 AT4G15010 AT4G15010
fragaria_vesca FvH4_4g29980
malus_domestica MD13G1062400.v1.1 MD16G1060700.v1.1
prunus_persica Prupe.1G287600_v2.0.a1
pyrus_communis pycom13g05480 pycom16g05290
rosa_chinensis RchiOBHm_Chr4g0438261
rosa_laevigata RLG00000006376
rosa_roxburghii Rroxscaffold_5G00379350
rosa_rugosa Rorug04G0308300
rosa_samantha Rh4AG359500 Rh4BG370300 Rh4CG384500
rosa_wichuraiana Rw0G006410 Rw0G016350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 252
Acc65I GGTACC 1 cut(s) 552
AccB1I GGYRCC 1 cut(s) 552
AccI GTMKAC 2 cut(s) 279, 658
AciI CCGC 5 cut(s) 191, 749, 821, 1009, 1038
AclWI GGATC 7 cut(s) 580, 755, 768, 973, 986, 1049, 1092
AcoI YGGCCR 2 cut(s) 662, 1053
AcsI RAATTY 4 cut(s) 154, 234, 445, 484
AfaI GTAC 4 cut(s) 167, 432, 554, 895
AfiI CCNNNNNNNGG 4 cut(s) 60, 121, 418, 419
AgsI TTSAA 1 cut(s) 443
AjnI CCWGG 4 cut(s) 297, 369, 664, 770
AluBI AGCT 6 cut(s) 83, 215, 339, 425, 851, 931
AluI AGCT 6 cut(s) 83, 215, 339, 425, 851, 931
Alw21I GWGCWC 1 cut(s) 217
Alw26I GTCTC 2 cut(s) 289, 919
AlwI GGATC 7 cut(s) 580, 755, 768, 973, 986, 1049, 1092
AlwNI CAGNNNCTG 1 cut(s) 575
AoxI GGCC 3 cut(s) 402, 662, 1053
ApeKI GCWGC 6 cut(s) 188, 845, 848, 851, 1011, 1035
ApoI RAATTY 4 cut(s) 154, 234, 445, 484
Asp718I GGTACC 1 cut(s) 552
AspLEI GCGC 1 cut(s) 11
AspS9I GGNCC 3 cut(s) 292, 403, 791
AsuHPI GGTGA 1 cut(s) 385
AvaII GGWCC 2 cut(s) 292, 791
BaeI ACNNNNGTAYC 2 cut(s) 536, 569
BalI TGGCCA 1 cut(s) 1055
BamHI GGATCC 2 cut(s) 760, 978
BanI GGYRCC 1 cut(s) 552
BanII GRGCYC 1 cut(s) 217
Bbv12I GWGCWC 1 cut(s) 217
BbvI GCAGC 6 cut(s) 200, 832, 838, 860, 1023, 1047
BccI CCATC 6 cut(s) 14, 251, 619, 630, 751, 1021
BceAI ACGGC 1 cut(s) 677
BcgI CGANNNNNNTGC 2 cut(s) 1024, 1058
BciT130I CCWGG 4 cut(s) 299, 371, 666, 772
BcoDI GTCTC 2 cut(s) 289, 919
BfmI CTRYAG 1 cut(s) 846
BfoI RGCGCY 1 cut(s) 12
BisI GCNGC 7 cut(s) 189, 822, 846, 849, 852, 1012, 1036
BlsI GCNGC 7 cut(s) 190, 823, 847, 850, 853, 1013, 1037
Bme1390I CCNGG 4 cut(s) 299, 371, 666, 772
Bme18I GGWCC 2 cut(s) 292, 791
BmgT120I GGNCC 3 cut(s) 292, 403, 791
BmiI GGNNCC 5 cut(s) 16, 405, 554, 762, 980
BmrFI CCNGG 4 cut(s) 299, 371, 666, 772
BmsI GCATC 2 cut(s) 532, 1055
BsaJI CCNNGG 6 cut(s) 369, 557, 770, 804, 1015, 1056
BsaWI WCCGGW 1 cut(s) 53
BsaXI ACNNNNNCTCC 4 cut(s) 15, 45, 414, 444
Bsc4I CCNNNNNNNGG 4 cut(s) 60, 121, 418, 419
Bse1I ACTGG 1 cut(s) 746
Bse3DI GCAATG 1 cut(s) 738
BseBI CCWGG 4 cut(s) 299, 371, 666, 772
BseDI CCNNGG 6 cut(s) 369, 557, 770, 804, 1015, 1056
BseGI GGATG 6 cut(s) 523, 567, 641, 762, 784, 1032
BseLI CCNNNNNNNGG 4 cut(s) 60, 121, 418, 419
BseMI GCAATG 1 cut(s) 738
BseMII CTCAG 2 cut(s) 279, 603
BseNI ACTGG 1 cut(s) 746
BseRI GAGGAG 1 cut(s) 39
BseXI GCAGC 6 cut(s) 200, 832, 838, 860, 1023, 1047
BsgI GTGCAG 1 cut(s) 707
BshFI GGCC 3 cut(s) 404, 664, 1055
BshNI GGYRCC 1 cut(s) 552
BsiHKAI GWGCWC 1 cut(s) 217
BsiSI CCGG 2 cut(s) 12, 54
BslI CCNNNNNNNGG 4 cut(s) 60, 121, 418, 419
BsmAI GTCTC 2 cut(s) 289, 919
BsmBI CGTCTC 1 cut(s) 289
BsmI GAATGC 1 cut(s) 390
BsnI GGCC 3 cut(s) 404, 664, 1055
Bsp1286I GDGCHC 1 cut(s) 217
Bsp1407I TGTACA 1 cut(s) 165
Bsp143I GATC 7 cut(s) 349, 572, 760, 884, 978, 1041, 1084
Bsp19I CCATGG 2 cut(s) 557, 1056
BspACI CCGC 5 cut(s) 191, 749, 821, 1009, 1038
BspANI GGCC 3 cut(s) 404, 664, 1055
BspCNI CTCAG 2 cut(s) 280, 602
BspLI GGNNCC 5 cut(s) 16, 405, 554, 762, 980
BspMAI CTGCAG 1 cut(s) 850
BspPI GGATC 7 cut(s) 580, 755, 768, 973, 986, 1049, 1092
BspT107I GGYRCC 1 cut(s) 552
BsrDI GCAATG 1 cut(s) 738
BsrGI TGTACA 1 cut(s) 165
BsrI ACTGG 1 cut(s) 746
BssECI CCNNGG 6 cut(s) 369, 557, 770, 804, 1015, 1056
BssMI GATC 7 cut(s) 349, 572, 760, 884, 978, 1041, 1084
BssT1I CCWWGG 4 cut(s) 557, 804, 1015, 1056
Bst2UI CCWGG 4 cut(s) 299, 371, 666, 772
Bst4CI ACNGT 2 cut(s) 728, 898
BstAPI GCANNNNNTGC 2 cut(s) 44, 721
BstAUI TGTACA 1 cut(s) 165
BstC8I GCNNGC 1 cut(s) 1033
BstDEI CTNAG 2 cut(s) 288, 589
BstDSI CCRYGG 2 cut(s) 557, 1056
BstEII GGTNACC 1 cut(s) 373
BstENI CCTNNNNNAGG 1 cut(s) 119
BstF5I GGATG 6 cut(s) 523, 567, 641, 762, 784, 1032
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 1 cut(s) 11
BstKTI GATC 7 cut(s) 352, 575, 763, 887, 981, 1044, 1087
BstMAI GTCTC 2 cut(s) 289, 919
BstMBI GATC 7 cut(s) 349, 572, 760, 884, 978, 1041, 1084
BstMWI GCNNNNNNNGC 5 cut(s) 44, 320, 721, 851, 1052
BstNI CCWGG 4 cut(s) 299, 371, 666, 772
BstPI GGTNACC 1 cut(s) 373
BstSCI CCNGG 4 cut(s) 297, 369, 664, 770
BstSFI CTRYAG 1 cut(s) 846
BstV1I GCAGC 6 cut(s) 200, 832, 838, 860, 1023, 1047
BstX2I RGATCY 4 cut(s) 572, 760, 978, 1084
BstYI RGATCY 4 cut(s) 572, 760, 978, 1084
BsuRI GGCC 3 cut(s) 404, 664, 1055
BtgI CCRYGG 2 cut(s) 557, 1056
BtsCI GGATG 6 cut(s) 523, 567, 641, 762, 784, 1032
BtsI GCAGTG 1 cut(s) 870
BtsIMutI CAGTG 3 cut(s) 597, 604, 870
Cac8I GCNNGC 1 cut(s) 1033
CaiI CAGNNNCTG 1 cut(s) 575
CfoI GCGC 1 cut(s) 11
Cfr13I GGNCC 3 cut(s) 292, 403, 791
Csp6I GTAC 4 cut(s) 166, 431, 553, 894
CviAII CATG 5 cut(s) 44, 365, 472, 558, 1057
CviQI GTAC 4 cut(s) 166, 431, 553, 894
DdeI CTNAG 2 cut(s) 288, 589
DpnI GATC 7 cut(s) 351, 574, 762, 886, 980, 1043, 1086
DpnII GATC 7 cut(s) 349, 572, 760, 884, 978, 1041, 1084
DraI TTTAAA 1 cut(s) 129
EaeI YGGCCR 2 cut(s) 662, 1053
Ecl136II GAGCTC 1 cut(s) 215
Eco130I CCWWGG 4 cut(s) 557, 804, 1015, 1056
Eco24I GRGCYC 1 cut(s) 217
Eco47I GGWCC 2 cut(s) 292, 791
Eco53kI GAGCTC 1 cut(s) 215
Eco91I GGTNACC 1 cut(s) 373
EcoICRI GAGCTC 1 cut(s) 215
EcoNI CCTNNNNNAGG 1 cut(s) 119
EcoO109I RGGNCCY 1 cut(s) 292
EcoO65I GGTNACC 1 cut(s) 373
EcoRII CCWGG 4 cut(s) 297, 369, 664, 770
EcoT14I CCWWGG 4 cut(s) 557, 804, 1015, 1056
EcoT38I GRGCYC 1 cut(s) 217
ErhI CCWWGG 4 cut(s) 557, 804, 1015, 1056
Esp3I CGTCTC 1 cut(s) 289
FaeI CATG 5 cut(s) 47, 368, 475, 561, 1060
FatI CATG 5 cut(s) 43, 364, 471, 557, 1056
FauI CCCGC 2 cut(s) 184, 1031
FauNDI CATATG 1 cut(s) 229
FblI GTMKAC 2 cut(s) 279, 658
Fnu4HI GCNGC 7 cut(s) 189, 822, 846, 849, 852, 1012, 1036
FokI GGATG 6 cut(s) 510, 574, 648, 769, 791, 1039
FriOI GRGCYC 1 cut(s) 217
Fsp4HI GCNGC 7 cut(s) 189, 822, 846, 849, 852, 1012, 1036
GlaI GCGC 1 cut(s) 10
GluI GCNGC 7 cut(s) 189, 822, 846, 849, 852, 1012, 1036
HaeII RGCGCY 1 cut(s) 12
HaeIII GGCC 3 cut(s) 404, 664, 1055
HapII CCGG 2 cut(s) 12, 54
HhaI GCGC 1 cut(s) 11
Hin1II CATG 5 cut(s) 47, 368, 475, 561, 1060
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HindIII AAGCTT 1 cut(s) 929
HinfI GANTC 4 cut(s) 326, 439, 680, 997
HpaII CCGG 2 cut(s) 12, 54
HphI GGTGA 1 cut(s) 385
Hpy166II GTNNAC 3 cut(s) 280, 659, 794
Hpy188I TCNGA 6 cut(s) 289, 616, 778, 936, 991, 1064
Hpy188III TCNNGA 8 cut(s) 98, 150, 467, 604, 677, 764, 882, 916
Hpy8I GTNNAC 3 cut(s) 280, 659, 794
Hpy99I CGWCG 1 cut(s) 922
HpyAV CCTTC 3 cut(s) 469, 626, 739
HpyCH4III ACNGT 2 cut(s) 728, 898
HpyCH4IV ACGT 2 cut(s) 276, 282
HpyCH4V TGCA 8 cut(s) 38, 47, 323, 390, 644, 724, 731, 848
HpyF10VI GCNNNNNNNGC 5 cut(s) 44, 320, 721, 851, 1052
HpyF3I CTNAG 2 cut(s) 288, 589
HpySE526I ACGT 2 cut(s) 276, 282
Hsp92II CATG 5 cut(s) 47, 368, 475, 561, 1060
HspAI GCGC 1 cut(s) 9
KpnI GGTACC 1 cut(s) 556
Kzo9I GATC 7 cut(s) 349, 572, 760, 884, 978, 1041, 1084
LmnI GCTCC 3 cut(s) 14, 212, 422
Lsp1109I GCAGC 6 cut(s) 200, 832, 838, 860, 1023, 1047
LweI GCATC 2 cut(s) 532, 1055
MaeII ACGT 2 cut(s) 276, 282
MaeIII GTNAC 3 cut(s) 373, 970, 1020
MalI GATC 7 cut(s) 351, 574, 762, 886, 980, 1043, 1086
MboI GATC 7 cut(s) 349, 572, 760, 884, 978, 1041, 1084
MboII GAAGA 2 cut(s) 207, 480
MflI RGATCY 4 cut(s) 572, 760, 978, 1084
MhlI GDGCHC 1 cut(s) 217
MlsI TGGCCA 1 cut(s) 1055
MluCI AATT 4 cut(s) 154, 234, 445, 484
MluNI TGGCCA 1 cut(s) 1055
MmeI TCCRAC 2 cut(s) 756, 1042
Mox20I TGGCCA 1 cut(s) 1055
MscI TGGCCA 1 cut(s) 1055
MseI TTAA 2 cut(s) 128, 482
Msp20I TGGCCA 1 cut(s) 1055
MspA1I CMGCKG 3 cut(s) 191, 851, 1038
MspI CCGG 2 cut(s) 12, 54
MspR9I CCNGG 4 cut(s) 299, 371, 666, 772
Mva1269I GAATGC 1 cut(s) 390
MvaI CCWGG 4 cut(s) 299, 371, 666, 772
MwoI GCNNNNNNNGC 5 cut(s) 44, 320, 721, 851, 1052
NcoI CCATGG 2 cut(s) 557, 1056
NdeI CATATG 1 cut(s) 229
NdeII GATC 7 cut(s) 349, 572, 760, 884, 978, 1041, 1084
NlaIII CATG 5 cut(s) 47, 368, 475, 561, 1060
NlaIV GGNNCC 5 cut(s) 16, 405, 554, 762, 980
NmeAIII GCCGAG 1 cut(s) 380
NmuCI GTSAC 1 cut(s) 373
PctI GAATGC 1 cut(s) 390
PfeI GAWTC 4 cut(s) 326, 439, 680, 997
PkrI GCNGC 7 cut(s) 190, 823, 847, 850, 853, 1013, 1037
PpuMI RGGWCCY 1 cut(s) 292
PsiI TTATAA 1 cut(s) 252
Psp124BI GAGCTC 1 cut(s) 217
Psp5II RGGWCCY 1 cut(s) 292
Psp6I CCWGG 4 cut(s) 297, 369, 664, 770
PspEI GGTNACC 1 cut(s) 373
PspGI CCWGG 4 cut(s) 297, 369, 664, 770
PspN4I GGNNCC 5 cut(s) 16, 405, 554, 762, 980
PspPI GGNCC 3 cut(s) 292, 403, 791
PspPPI RGGWCCY 1 cut(s) 292
PstI CTGCAG 1 cut(s) 850
PstNI CAGNNNCTG 1 cut(s) 575
PsuI RGATCY 4 cut(s) 572, 760, 978, 1084
PvuII CAGCTG 1 cut(s) 851
RsaI GTAC 4 cut(s) 167, 432, 554, 895
RsaNI GTAC 4 cut(s) 166, 431, 553, 894
SacI GAGCTC 1 cut(s) 217
SaqAI TTAA 2 cut(s) 128, 482
SatI GCNGC 7 cut(s) 189, 822, 846, 849, 852, 1012, 1036
Sau3AI GATC 7 cut(s) 349, 572, 760, 884, 978, 1041, 1084
Sau96I GGNCC 3 cut(s) 292, 403, 791
ScrFI CCNGG 4 cut(s) 299, 371, 666, 772
SduI GDGCHC 1 cut(s) 217
SfaNI GCATC 2 cut(s) 532, 1055
SfcI CTRYAG 1 cut(s) 846
SinI GGWCC 2 cut(s) 292, 791
Sse9I AATT 4 cut(s) 154, 234, 445, 484
SsiI CCGC 5 cut(s) 191, 749, 821, 1009, 1038
SstI GAGCTC 1 cut(s) 217
StyD4I CCNGG 4 cut(s) 297, 369, 664, 770
StyI CCWWGG 4 cut(s) 557, 804, 1015, 1056
TaaI ACNGT 2 cut(s) 728, 898
TaiI ACGT 2 cut(s) 279, 285
TaqI TCGA 3 cut(s) 139, 883, 917
TaqII GACCGA 1 cut(s) 779
TasI AATT 4 cut(s) 154, 234, 445, 484
TatI WGTACW 1 cut(s) 165
TauI GCSGC 1 cut(s) 824
TfiI GAWTC 4 cut(s) 326, 439, 680, 997
Tru1I TTAA 2 cut(s) 128, 482
Tru9I TTAA 2 cut(s) 128, 482
TscAI CASTG 3 cut(s) 597, 604, 877
TseFI GTSAC 1 cut(s) 373
TseI GCWGC 6 cut(s) 188, 845, 848, 851, 1011, 1035
Tsp45I GTSAC 1 cut(s) 373
TspDTI ATGAA 6 cut(s) 17, 246, 353, 371, 488, 798
TspGWI ACGGA 2 cut(s) 935, 1039
TspRI CASTG 3 cut(s) 597, 604, 877
VpaK11BI GGWCC 2 cut(s) 292, 791
XagI CCTNNNNNAGG 1 cut(s) 119
XapI RAATTY 4 cut(s) 154, 234, 445, 484
XmiI GTMKAC 2 cut(s) 279, 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.