Prupe.1G287600_v2.0.a1

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0013194
Physical Location & Seq
Forward (+)
28758851 .. 28761863
3013 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G287600.1

Sequence Viewer

Length: 1134 bp
ATGATGGATGAGTGGTTAAAGAACCAGATCTTTGCAATCCATGCACTTTCTGGTGTAGGGTCGGTGGCATTAGGCACAGCTCTTACTTACCCTCTTGATACTATCAAAACCCTTATTCAGGTTGGTTCAGGGTCTAATAAACAACTGACAACTGCTCAGGTTTTAAAGAGAGTTCGATACTTTTCAGGAAATACAGGTTTGTACAATGGTTTCCTATGGCTGGCAGTGGGAAGAACTTTTGGGGTTGGAGCTCGCTTTGGGACCTATGAAATTTTGACAGCCTTTTATAAAGATGGTCGAGAAGATAACTATGTCTACGTCTCTGAGGCCCTCCTGGCAGGACTTGTTGCTGGTGTTGCAGAAGCACTAATAAGTTCTCCCTTTGAACTTATAAAACTTCGTGCCCAGGTGACCTCTGCTTCTCGCATTCCAAGCTCGGCCTCTCTCACAGAAAAGGGAGCTGTTGCACCTGTGATTCAGAGGTTATTGCGTGGATATATTCCGGACGTGAAGGCATTAAATTCTTCTGTTGGCCTTTTATCCACCCTAACAACCAAACATCCCAATATGACGAGTGCTTTACAAGAGTATCCATGGATGATGACGGGATCTGGGAGGCCACCATCCGTGTTCAGTGTTAGGAAACCATCTGAAGTCATCTCTTTAGAAGGATGGGGTGCATTATGGAGAGGCCTACGGTCAGGGGTTGTTCGGGATTCAGTTTTTGGTGGCATATTCTTCTCTACTTGGCAATCCCTGCACCAAGCAATGCTTGACTGGAAGGCAGTGGGGATGGATCCAGAACCTAGGTTGGATGATGAAATTGGTCCTCTGTCTCCTTGGGCTGTGAGTCTTGCTGCTGGAGTTTCTGGTTCAGTTGCTGCAGCTGCTTCTCATTGTTTTGACACTGCTAAGTCTCGATCACAATGTATTGTGCTGCCCAAGTTTGTCTCTACGGAGAGGAAGCTTCTGAAATGGGGAAGACCAGGGAATAGGTTTGAGAGACTTACAGGGATTCACCCTGCAGACAGGAATCTCCTGTTCCGTGGCCTTGGGTTACGGATGGCTCGCAGTGGGATTGCATCATTCATCATGGTGGGAAGTTATTTCTTGACTGTGGATCGTCTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

378

Amino Acids

40.91

Weight (kDa)

9.83

Isoelectric Point (pI)

28.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15010 AT4G15010 AT4G15010
fragaria_vesca FvH4_4g29980
malus_domestica MD13G1062400.v1.1 MD16G1060700.v1.1
prunus_persica Prupe.1G287600_v2.0.a1
pyrus_communis pycom13g05480 pycom16g05290
rosa_chinensis RchiOBHm_Chr4g0438261
rosa_laevigata RLG00000006376
rosa_roxburghii Rroxscaffold_5G00379350
rosa_rugosa Rorug04G0308300
rosa_samantha Rh4AG359500 Rh4BG370300 Rh4CG384500
rosa_wichuraiana Rw0G006410 Rw0G016350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 288, 392
AccI GTMKAC 1 cut(s) 315
AccIII TCCGGA 1 cut(s) 502
AclWI GGATC 4 cut(s) 616, 791, 804, 1128
AcsI RAATTY 2 cut(s) 270, 520
AcuI CTGAAG 1 cut(s) 672
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 2 cut(s) 118, 220
AgsI TTSAA 1 cut(s) 386
AjiI CACGTC 1 cut(s) 508
AjnI CCWGG 3 cut(s) 333, 405, 985
AluBI AGCT 6 cut(s) 80, 251, 435, 461, 887, 967
AluI AGCT 6 cut(s) 80, 251, 435, 461, 887, 967
Alw21I GWGCWC 1 cut(s) 253
Alw26I GTCTC 5 cut(s) 325, 840, 921, 955, 997
AlwI GGATC 4 cut(s) 616, 791, 804, 1128
AlwNI CAGNNNCTG 1 cut(s) 881
Aor13HI TCCGGA 1 cut(s) 502
AoxI GGCC 6 cut(s) 327, 438, 532, 617, 691, 1048
ApeKI GCWGC 5 cut(s) 857, 881, 884, 887, 937
ApoI RAATTY 2 cut(s) 270, 520
AspA2I CCTAGG 1 cut(s) 806
AspS9I GGNCC 3 cut(s) 261, 328, 827
AsuHPI GGTGA 2 cut(s) 421, 1010
AvaII GGWCC 2 cut(s) 261, 827
AvrII CCTAGG 1 cut(s) 806
BaeGI GKGCMC 1 cut(s) 406
BaeI ACNNNNGTAYC 2 cut(s) 572, 605
BamHI GGATCC 1 cut(s) 796
BanII GRGCYC 1 cut(s) 253
BbsI GAAGAC 1 cut(s) 988
Bbv12I GWGCWC 1 cut(s) 253
BbvI GCAGC 5 cut(s) 844, 868, 874, 896, 924
BccI CCATC 6 cut(s) 287, 631, 655, 666, 787, 1057
BciT130I CCWGG 3 cut(s) 335, 407, 987
BciVI GTATCC 1 cut(s) 600
BcoDI GTCTC 5 cut(s) 325, 840, 921, 955, 997
BfaI CTAG 1 cut(s) 807
BfmI CTRYAG 2 cut(s) 882, 1023
BfuI GTATCC 1 cut(s) 600
BglI GCCNNNNNGGC 1 cut(s) 335
BglII AGATCT 1 cut(s) 27
BisI GCNGC 5 cut(s) 858, 882, 885, 888, 938
BlnI CCTAGG 1 cut(s) 806
BlsI GCNGC 5 cut(s) 859, 883, 886, 889, 939
Bme1390I CCNGG 3 cut(s) 335, 407, 987
Bme18I GGWCC 2 cut(s) 261, 827
BmgBI CACGTC 1 cut(s) 508
BmgT120I GGNCC 3 cut(s) 261, 328, 827
BmiI GGNNCC 2 cut(s) 262, 798
BmrFI CCNGG 3 cut(s) 335, 407, 987
BmsI GCATC 1 cut(s) 1091
BpiI GAAGAC 1 cut(s) 988
BpmI CTGGAG 1 cut(s) 882
Bpu10I CCTNAGC 1 cut(s) 156
BsaJI CCNNGG 7 cut(s) 405, 593, 806, 839, 986, 1045, 1051
BsaWI WCCGGW 1 cut(s) 502
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 220
Bse1I ACTGG 1 cut(s) 782
Bse3DI GCAATG 1 cut(s) 774
BseAI TCCGGA 1 cut(s) 502
BseBI CCWGG 3 cut(s) 335, 407, 987
BseDI CCNNGG 7 cut(s) 405, 593, 806, 839, 986, 1045, 1051
BseGI GGATG 8 cut(s) 13, 559, 603, 623, 677, 798, 820, 1068
BseLI CCNNNNNNNGG 2 cut(s) 118, 220
BseMI GCAATG 1 cut(s) 774
BseMII CTCAG 2 cut(s) 170, 315
BseNI ACTGG 1 cut(s) 782
BseSI GKGCMC 1 cut(s) 406
BseXI GCAGC 5 cut(s) 844, 868, 874, 896, 924
BsgI GTGCAG 1 cut(s) 743
BshFI GGCC 6 cut(s) 329, 440, 534, 619, 693, 1050
BsiHKAI GWGCWC 1 cut(s) 253
BsiSI CCGG 1 cut(s) 503
BslFI GGGAC 1 cut(s) 274
BslI CCNNNNNNNGG 2 cut(s) 118, 220
BsmAI GTCTC 5 cut(s) 325, 840, 921, 955, 997
BsmBI CGTCTC 1 cut(s) 325
BsmFI GGGAC 1 cut(s) 274
BsmI GAATGC 1 cut(s) 426
BsnI GGCC 6 cut(s) 329, 440, 534, 619, 693, 1050
Bsp1286I GDGCHC 2 cut(s) 253, 406
Bsp13I TCCGGA 1 cut(s) 502
Bsp1407I TGTACA 1 cut(s) 201
Bsp143I GATC 5 cut(s) 27, 608, 796, 920, 1120
Bsp19I CCATGG 1 cut(s) 593
BspANI GGCC 6 cut(s) 329, 440, 534, 619, 693, 1050
BspCNI CTCAG 2 cut(s) 169, 316
BspEI TCCGGA 1 cut(s) 502
BspLI GGNNCC 2 cut(s) 262, 798
BspMAI CTGCAG 2 cut(s) 886, 1027
BspPI GGATC 4 cut(s) 616, 791, 804, 1128
BsrDI GCAATG 1 cut(s) 774
BsrGI TGTACA 1 cut(s) 201
BsrI ACTGG 1 cut(s) 782
BssECI CCNNGG 7 cut(s) 405, 593, 806, 839, 986, 1045, 1051
BssMI GATC 5 cut(s) 27, 608, 796, 920, 1120
BssT1I CCWWGG 4 cut(s) 593, 806, 839, 1051
Bst2UI CCWGG 3 cut(s) 335, 407, 987
Bst4CI ACNGT 2 cut(s) 699, 1117
BstAPI GCANNNNNTGC 2 cut(s) 41, 757
BstAUI TGTACA 1 cut(s) 201
BstC8I GCNNGC 3 cut(s) 222, 253, 1069
BstDEI CTNAG 3 cut(s) 156, 324, 912
BstDSI CCRYGG 2 cut(s) 593, 1045
BstEII GGTNACC 1 cut(s) 409
BstENI CCTNNNNNAGG 1 cut(s) 116
BstF5I GGATG 8 cut(s) 13, 559, 603, 623, 677, 798, 820, 1068
BstKTI GATC 5 cut(s) 30, 611, 799, 923, 1123
BstMAI GTCTC 5 cut(s) 325, 840, 921, 955, 997
BstMBI GATC 5 cut(s) 27, 608, 796, 920, 1120
BstMWI GCNNNNNNNGC 6 cut(s) 41, 335, 356, 432, 757, 887
BstNI CCWGG 3 cut(s) 335, 407, 987
BstPI GGTNACC 1 cut(s) 409
BstSCI CCNGG 3 cut(s) 333, 405, 985
BstSFI CTRYAG 2 cut(s) 882, 1023
BstSLI GKGCMC 1 cut(s) 406
BstV1I GCAGC 5 cut(s) 844, 868, 874, 896, 924
BstV2I GAAGAC 1 cut(s) 988
BstX2I RGATCY 3 cut(s) 27, 608, 796
BstYI RGATCY 3 cut(s) 27, 608, 796
BsuI GTATCC 1 cut(s) 600
BsuRI GGCC 6 cut(s) 329, 440, 534, 619, 693, 1050
BtgI CCRYGG 2 cut(s) 593, 1045
BtrI CACGTC 1 cut(s) 508
BtsCI GGATG 8 cut(s) 13, 559, 603, 623, 677, 798, 820, 1068
BtsI GCAGTG 4 cut(s) 231, 792, 906, 1078
BtsIMutI CAGTG 5 cut(s) 231, 640, 792, 906, 1078
Cac8I GCNNGC 3 cut(s) 222, 253, 1069
CaiI CAGNNNCTG 1 cut(s) 881
Cfr13I GGNCC 3 cut(s) 261, 328, 827
Csp6I GTAC 1 cut(s) 202
CviAII CATG 3 cut(s) 41, 594, 1093
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 3 cut(s) 156, 324, 912
DpnI GATC 5 cut(s) 29, 610, 798, 922, 1122
DpnII GATC 5 cut(s) 27, 608, 796, 920, 1120
DraI TTTAAA 1 cut(s) 165
Ecl136II GAGCTC 1 cut(s) 251
Eco130I CCWWGG 4 cut(s) 593, 806, 839, 1051
Eco147I AGGCCT 1 cut(s) 693
Eco24I GRGCYC 1 cut(s) 253
Eco47I GGWCC 2 cut(s) 261, 827
Eco53kI GAGCTC 1 cut(s) 251
Eco57I CTGAAG 1 cut(s) 672
Eco91I GGTNACC 1 cut(s) 409
EcoICRI GAGCTC 1 cut(s) 251
EcoNI CCTNNNNNAGG 1 cut(s) 116
EcoO109I RGGNCCY 2 cut(s) 261, 328
EcoO65I GGTNACC 1 cut(s) 409
EcoRII CCWGG 3 cut(s) 333, 405, 985
EcoT14I CCWWGG 4 cut(s) 593, 806, 839, 1051
EcoT38I GRGCYC 1 cut(s) 253
ErhI CCWWGG 4 cut(s) 593, 806, 839, 1051
Esp3I CGTCTC 1 cut(s) 325
FaeI CATG 3 cut(s) 44, 597, 1096
FalI AAGNNNNNCTT 2 cut(s) 756, 788
FaqI GGGAC 1 cut(s) 274
FatI CATG 3 cut(s) 40, 593, 1092
FblI GTMKAC 1 cut(s) 315
Fnu4HI GCNGC 5 cut(s) 858, 882, 885, 888, 938
FokI GGATG 8 cut(s) 20, 546, 610, 610, 684, 805, 827, 1075
FriOI GRGCYC 1 cut(s) 253
Fsp4HI GCNGC 5 cut(s) 858, 882, 885, 888, 938
FspBI CTAG 1 cut(s) 807
GluI GCNGC 5 cut(s) 858, 882, 885, 888, 938
GsuI CTGGAG 1 cut(s) 882
HaeIII GGCC 6 cut(s) 329, 440, 534, 619, 693, 1050
HapII CCGG 1 cut(s) 503
Hin1II CATG 3 cut(s) 44, 597, 1096
HindIII AAGCTT 1 cut(s) 965
HinfI GANTC 5 cut(s) 475, 716, 850, 1015, 1033
HpaII CCGG 1 cut(s) 503
HphI GGTGA 2 cut(s) 421, 1010
Hpy166II GTNNAC 1 cut(s) 316
Hpy188I TCNGA 4 cut(s) 325, 480, 652, 972
Hpy188III TCNNGA 8 cut(s) 95, 186, 299, 503, 713, 800, 918, 1111
Hpy8I GTNNAC 1 cut(s) 316
HpyAV CCTTC 3 cut(s) 505, 662, 775
HpyCH4III ACNGT 2 cut(s) 699, 1117
HpyCH4IV ACGT 2 cut(s) 318, 507
HpyCH4V TGCA 9 cut(s) 35, 44, 359, 467, 680, 760, 884, 1025, 1082
HpyF10VI GCNNNNNNNGC 6 cut(s) 41, 335, 356, 432, 757, 887
HpyF3I CTNAG 3 cut(s) 156, 324, 912
HpySE526I ACGT 2 cut(s) 318, 507
Hsp92II CATG 3 cut(s) 44, 597, 1096
Kpn2I TCCGGA 1 cut(s) 502
Kzo9I GATC 5 cut(s) 27, 608, 796, 920, 1120
LmnI GCTCC 2 cut(s) 248, 458
Lsp1109I GCAGC 5 cut(s) 844, 868, 874, 896, 924
LweI GCATC 1 cut(s) 1091
MaeI CTAG 1 cut(s) 807
MaeII ACGT 2 cut(s) 318, 507
MaeIII GTNAC 2 cut(s) 409, 1056
MalI GATC 5 cut(s) 29, 610, 798, 922, 1122
MboI GATC 5 cut(s) 27, 608, 796, 920, 1120
MboII GAAGA 5 cut(s) 243, 314, 516, 730, 993
MflI RGATCY 3 cut(s) 27, 608, 796
MhlI GDGCHC 2 cut(s) 253, 406
MluCI AATT 3 cut(s) 270, 520, 822
MlyI GAGTC 1 cut(s) 859
MmeI TCCRAC 2 cut(s) 226, 792
MroI TCCGGA 1 cut(s) 502
MseI TTAA 3 cut(s) 17, 164, 518
MslI CAYNNNNRTG 1 cut(s) 1094
MspA1I CMGCKG 1 cut(s) 887
MspI CCGG 1 cut(s) 503
MspR9I CCNGG 3 cut(s) 335, 407, 987
Mva1269I GAATGC 1 cut(s) 426
MvaI CCWGG 3 cut(s) 335, 407, 987
MwoI GCNNNNNNNGC 6 cut(s) 41, 335, 356, 432, 757, 887
NcoI CCATGG 1 cut(s) 593
NdeII GATC 5 cut(s) 27, 608, 796, 920, 1120
NlaIII CATG 3 cut(s) 44, 597, 1096
NlaIV GGNNCC 2 cut(s) 262, 798
NmeAIII GCCGAG 1 cut(s) 416
NmuCI GTSAC 1 cut(s) 409
PceI AGGCCT 1 cut(s) 693
PctI GAATGC 1 cut(s) 426
PfeI GAWTC 4 cut(s) 475, 716, 1015, 1033
PkrI GCNGC 5 cut(s) 859, 883, 886, 889, 939
PleI GAGTC 1 cut(s) 858
PpsI GAGTC 1 cut(s) 858
PpuMI RGGWCCY 1 cut(s) 261
PsiI TTATAA 2 cut(s) 288, 392
Psp124BI GAGCTC 1 cut(s) 253
Psp5II RGGWCCY 1 cut(s) 261
Psp6I CCWGG 3 cut(s) 333, 405, 985
PspEI GGTNACC 1 cut(s) 409
PspGI CCWGG 3 cut(s) 333, 405, 985
PspN4I GGNNCC 2 cut(s) 262, 798
PspPI GGNCC 3 cut(s) 261, 328, 827
PspPPI RGGWCCY 1 cut(s) 261
PstI CTGCAG 2 cut(s) 886, 1027
PstNI CAGNNNCTG 1 cut(s) 881
PsuI RGATCY 3 cut(s) 27, 608, 796
PvuII CAGCTG 1 cut(s) 887
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 1094
SacI GAGCTC 1 cut(s) 253
SaqAI TTAA 3 cut(s) 17, 164, 518
SatI GCNGC 5 cut(s) 858, 882, 885, 888, 938
Sau3AI GATC 5 cut(s) 27, 608, 796, 920, 1120
Sau96I GGNCC 3 cut(s) 261, 328, 827
SchI GAGTC 1 cut(s) 859
ScrFI CCNGG 3 cut(s) 335, 407, 987
SduI GDGCHC 2 cut(s) 253, 406
SfaNI GCATC 1 cut(s) 1091
SfcI CTRYAG 2 cut(s) 882, 1023
SinI GGWCC 2 cut(s) 261, 827
SmiMI CAYNNNNRTG 1 cut(s) 1094
Sse9I AATT 3 cut(s) 270, 520, 822
SseBI AGGCCT 1 cut(s) 693
SspMI CTAG 1 cut(s) 807
SstI GAGCTC 1 cut(s) 253
StuI AGGCCT 1 cut(s) 693
StyD4I CCNGG 3 cut(s) 333, 405, 985
StyI CCWWGG 4 cut(s) 593, 806, 839, 1051
TaaI ACNGT 2 cut(s) 699, 1117
TaiI ACGT 2 cut(s) 321, 510
TaqI TCGA 3 cut(s) 175, 298, 919
TasI AATT 3 cut(s) 270, 520, 822
TatI WGTACW 1 cut(s) 201
TfiI GAWTC 4 cut(s) 475, 716, 1015, 1033
Tru1I TTAA 3 cut(s) 17, 164, 518
Tru9I TTAA 3 cut(s) 17, 164, 518
TscAI CASTG 5 cut(s) 231, 640, 792, 913, 1078
TseFI GTSAC 1 cut(s) 409
TseI GCWGC 5 cut(s) 857, 881, 884, 887, 937
Tsp45I GTSAC 1 cut(s) 409
TspDTI ATGAA 3 cut(s) 282, 834, 1078
TspGWI ACGGA 4 cut(s) 616, 971, 1034, 1075
TspRI CASTG 5 cut(s) 231, 640, 792, 913, 1078
VpaK11BI GGWCC 2 cut(s) 261, 827
XagI CCTNNNNNAGG 1 cut(s) 116
XapI RAATTY 2 cut(s) 270, 520
XcmI CCANNNNNNNNNTGG 1 cut(s) 47
XmaJI CCTAGG 1 cut(s) 806
XmiI GTMKAC 1 cut(s) 315
XspI CTAG 1 cut(s) 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.