Rroxscaffold_5G00379350

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0013194
Physical Location & Seq
Reverse (-)
59772859 .. 59775862
3004 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00379350.1

Sequence Viewer

Length: 1131 bp
ATGGATGAACTGTTAAAGAACAAGATTTTTGCAACGCATGCTCTTACTGGTGTAGGATCAGTGACATTAGGCACAGCTCTTACTTACCCTTTAGATACTGTTAAAGTCATTATTCAGGTTGGTTCAGGTTCAAGTAAACAGTTGACAACGACTGAAGTTTTCAACAGAGTTCGGTCGTTTAGAGGAAATTCAGGCTTGTACAGTGGTTTTTGGTGGTTGGCAGTGGGAAGAACTTTAGGTGTTGGAGCTCGCTTTGGAACCTATGAAATTTTGACGGCTTTTTATAAAGATGGTCGGGAAGATAACCATGTACATGCCTCTGAGGCCCTCTTAGCAGGACTTATTGCTGGTTTTGTAGAATCACTAATAACTTCTCCATTCGAACTTATTAAAGTTCGTGCCCAGATCACTTCTGCTTCTCGCATTCCAAAGTCGGCGTCTTTCACAGAGAAGGTAGCTGTTGCACCTTTGATACAGAGATTACTACATGGATATACGCCAGACCCAAAGGCATTAAACTATTCTGTCGGTCTTTTATCCACCCTAACAACCAAATATCCCAATATGATGAGTGCCTTACAAGACTATCCATGGATGATGACTGGATCTGGGAGGCCACCATCAGTGTTCAATGTTAGGAAACTATCTCAAATCATCTCTTTGGAAGGATGGGGCTCATTATGGAGAGGTCTACGGTCAGGAGTTGTTCGGGACTCAGTTTTCAGTGGCTTATTCTTTGCTACTTGGCAATCCCTGCACCGAGCAATGCTTGACTGGAAGGCAGTGGGGATGAATCCAGAACCCAGGACGGATGATGAAATTGGTCCACTGTCACCTTTCGCTGTTAGTGTTGCGGCTGGAGTTTCTGGTTCAGTTGCCGCAGCTGCCTCTCATTGTTTTGACACTGCCAAGTGTCGATCCCAATGTGTTGTTTTGCCCAAGTTTCTCTCCATGGAGAGGAAGCTTCTGAAATGGAGAACCCCGGGGAAGAGGTTCGAGAGAGCTACAGGGATCCACCCCGCCGACAGGAACCTCCTCTTCCGCGGCATTGGTTTGCGGATGGCTCGCAGTGGGATTGCATCATTCGTAATGGTGGGAAGCTATTTCCTGGCTGTCGATCGTCTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

376

Amino Acids

41.06

Weight (kDa)

10.0

Isoelectric Point (pI)

28.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 10 - 96 2.3e-12 Mitochondrial carrier protein
Mito_carr PF00153 104 - 144 1.5e-06 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15010 AT4G15010 AT4G15010
fragaria_vesca FvH4_4g29980
malus_domestica MD13G1062400.v1.1 MD16G1060700.v1.1
prunus_persica Prupe.1G287600_v2.0.a1
pyrus_communis pycom13g05480 pycom16g05290
rosa_chinensis RchiOBHm_Chr4g0438261
rosa_laevigata RLG00000006376
rosa_roxburghii Rroxscaffold_5G00379350
rosa_rugosa Rorug04G0308300
rosa_samantha Rh4AG359500 Rh4BG370300 Rh4CG384500
rosa_wichuraiana Rw0G006410 Rw0G016350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 285
AccI GTMKAC 1 cut(s) 691
AccII CGCG 1 cut(s) 1044
AciI CCGC 6 cut(s) 854, 879, 1020, 1042, 1044, 1057
AclWI GGATC 5 cut(s) 64, 613, 912, 1006, 1019
AcsI RAATTY 2 cut(s) 187, 267
AcuI CTGAAG 1 cut(s) 174
AcyI GRCGYC 1 cut(s) 437
AfaI GTAC 2 cut(s) 200, 312
AfiI CCNNNNNNNGG 2 cut(s) 957, 1026
AgsI TTSAA 3 cut(s) 132, 163, 631
AjnI CCWGG 2 cut(s) 803, 1107
AluBI AGCT 7 cut(s) 77, 248, 458, 884, 964, 1004, 1101
AluI AGCT 7 cut(s) 77, 248, 458, 884, 964, 1004, 1101
Alw21I GWGCWC 1 cut(s) 250
AlwI GGATC 5 cut(s) 64, 613, 912, 1006, 1019
Ama87I CYCGRG 1 cut(s) 982
AoxI GGCC 2 cut(s) 324, 614
ApeKI GCWGC 2 cut(s) 881, 884
ApoI RAATTY 2 cut(s) 187, 267
ArsI GACNNNNNNTTYG 2 cut(s) 422, 454
Asp700I GAANNNNTTC 1 cut(s) 992
AspS9I GGNCC 2 cut(s) 325, 824
AsuC2I CCSGG 2 cut(s) 983, 984
AsuHPI GGTGA 1 cut(s) 825
AsuII TTCGAA 1 cut(s) 381
AvaI CYCGRG 1 cut(s) 982
AvaII GGWCC 1 cut(s) 824
BaeGI GKGCMC 1 cut(s) 403
BamHI GGATCC 1 cut(s) 1011
BanII GRGCYC 2 cut(s) 250, 677
Bbv12I GWGCWC 1 cut(s) 250
BbvI GCAGC 2 cut(s) 871, 893
BccI CCATC 4 cut(s) 284, 628, 663, 1054
BceAI ACGGC 1 cut(s) 291
BcgI CGANNNNNNTGC 1 cut(s) 1106
BciT130I CCWGG 2 cut(s) 805, 1109
BcnI CCSGG 2 cut(s) 983, 984
BfmI CTRYAG 1 cut(s) 1005
BglI GCCNNNNNGGC 1 cut(s) 323
BisI GCNGC 5 cut(s) 855, 879, 882, 885, 1045
BlsI GCNGC 5 cut(s) 856, 880, 883, 886, 1046
Bme1390I CCNGG 4 cut(s) 805, 983, 984, 1109
Bme18I GGWCC 1 cut(s) 824
BmeT110I CYCGRG 1 cut(s) 982
BmgT120I GGNCC 2 cut(s) 325, 824
BmiI GGNNCC 3 cut(s) 259, 1013, 1031
BmrFI CCNGG 4 cut(s) 805, 983, 984, 1109
BmsI GCATC 1 cut(s) 1088
BpmI CTGGAG 1 cut(s) 879
Bpu14I TTCGAA 1 cut(s) 381
BpuMI CCSGG 2 cut(s) 983, 984
BsaHI GRCGYC 1 cut(s) 437
BsaJI CCNNGG 7 cut(s) 590, 803, 951, 981, 982, 983, 1042
Bsc4I CCNNNNNNNGG 2 cut(s) 957, 1026
Bse1I ACTGG 3 cut(s) 52, 607, 779
Bse3DI GCAATG 1 cut(s) 771
BseBI CCWGG 2 cut(s) 805, 1109
BseDI CCNNGG 7 cut(s) 590, 803, 951, 981, 982, 983, 1042
BseGI GGATG 6 cut(s) 10, 600, 674, 795, 817, 1065
BseLI CCNNNNNNNGG 2 cut(s) 957, 1026
BseMI GCAATG 1 cut(s) 771
BseMII CTCAG 2 cut(s) 312, 729
BseNI ACTGG 3 cut(s) 52, 607, 779
BseRI GAGGAG 1 cut(s) 1025
BseSI GKGCMC 1 cut(s) 403
BseXI GCAGC 2 cut(s) 871, 893
BsgI GTGCAG 1 cut(s) 740
Bsh1236I CGCG 1 cut(s) 1044
Bsh1285I CGRYCG 2 cut(s) 176, 1120
BshFI GGCC 2 cut(s) 326, 616
BsiEI CGRYCG 2 cut(s) 176, 1120
BsiHKAI GWGCWC 1 cut(s) 250
BsiHKCI CYCGRG 1 cut(s) 982
BsiSI CCGG 1 cut(s) 983
BslFI GGGAC 1 cut(s) 725
BslI CCNNNNNNNGG 2 cut(s) 957, 1026
BsmFI GGGAC 1 cut(s) 725
BsmI GAATGC 1 cut(s) 423
BsnI GGCC 2 cut(s) 326, 616
BsoBI CYCGRG 1 cut(s) 982
Bsp119I TTCGAA 1 cut(s) 381
Bsp1286I GDGCHC 3 cut(s) 250, 403, 677
Bsp1407I TGTACA 2 cut(s) 198, 310
Bsp143I GATC 6 cut(s) 56, 405, 605, 917, 1011, 1117
Bsp19I CCATGG 2 cut(s) 590, 951
BspACI CCGC 6 cut(s) 854, 879, 1020, 1042, 1044, 1057
BspANI GGCC 2 cut(s) 326, 616
BspCNI CTCAG 2 cut(s) 313, 728
BspFNI CGCG 1 cut(s) 1044
BspLI GGNNCC 3 cut(s) 259, 1013, 1031
BspPI GGATC 5 cut(s) 64, 613, 912, 1006, 1019
BspT104I TTCGAA 1 cut(s) 381
BsrDI GCAATG 1 cut(s) 771
BsrGI TGTACA 2 cut(s) 198, 310
BsrI ACTGG 3 cut(s) 52, 607, 779
BssECI CCNNGG 7 cut(s) 590, 803, 951, 981, 982, 983, 1042
BssMI GATC 6 cut(s) 56, 405, 605, 917, 1011, 1117
BssNI GRCGYC 1 cut(s) 437
BssT1I CCWWGG 2 cut(s) 590, 951
Bst2UI CCWGG 2 cut(s) 805, 1109
Bst4CI ACNGT 6 cut(s) 12, 100, 141, 203, 696, 831
Bst6I CTCTTC 2 cut(s) 983, 1043
BstACI GRCGYC 1 cut(s) 437
BstAPI GCANNNNNTGC 2 cut(s) 38, 754
BstAUI TGTACA 2 cut(s) 198, 310
BstBI TTCGAA 1 cut(s) 381
BstC8I GCNNGC 3 cut(s) 39, 250, 1066
BstDEI CTNAG 3 cut(s) 321, 331, 715
BstDSI CCRYGG 3 cut(s) 590, 951, 1042
BstF5I GGATG 6 cut(s) 10, 600, 674, 795, 817, 1065
BstFNI CGCG 1 cut(s) 1044
BstKTI GATC 6 cut(s) 59, 408, 608, 920, 1014, 1120
BstMBI GATC 6 cut(s) 56, 405, 605, 917, 1011, 1117
BstMCI CGRYCG 2 cut(s) 176, 1120
BstMWI GCNNNNNNNGC 5 cut(s) 38, 323, 332, 754, 884
BstNI CCWGG 2 cut(s) 805, 1109
BstNSI RCATGY 2 cut(s) 41, 317
BstSCI CCNGG 4 cut(s) 803, 981, 982, 1107
BstSFI CTRYAG 1 cut(s) 1005
BstSLI GKGCMC 1 cut(s) 403
BstUI CGCG 1 cut(s) 1044
BstV1I GCAGC 2 cut(s) 871, 893
BstX2I RGATCY 2 cut(s) 605, 1011
BstYI RGATCY 2 cut(s) 605, 1011
BsuRI GGCC 2 cut(s) 326, 616
BtgI CCRYGG 3 cut(s) 590, 951, 1042
BtsCI GGATG 6 cut(s) 10, 600, 674, 795, 817, 1065
BtsI GCAGTG 4 cut(s) 228, 789, 903, 1075
BtsIMutI CAGTG 9 cut(s) 66, 208, 228, 630, 730, 789, 827, 903, 1075
Cac8I GCNNGC 3 cut(s) 39, 250, 1066
Cfr13I GGNCC 2 cut(s) 325, 824
Cfr42I CCGCGG 1 cut(s) 1045
Cfr9I CCCGGG 1 cut(s) 982
CseI GACGC 1 cut(s) 426
Csp6I GTAC 2 cut(s) 199, 311
CviAII CATG 6 cut(s) 38, 308, 314, 488, 591, 952
CviQI GTAC 2 cut(s) 199, 311
DdeI CTNAG 3 cut(s) 321, 331, 715
DpnI GATC 6 cut(s) 58, 407, 607, 919, 1013, 1119
DpnII GATC 6 cut(s) 56, 405, 605, 917, 1011, 1117
Eam1104I CTCTTC 2 cut(s) 983, 1043
EarI CTCTTC 2 cut(s) 983, 1043
Ecl136II GAGCTC 1 cut(s) 248
Eco130I CCWWGG 2 cut(s) 590, 951
Eco24I GRGCYC 2 cut(s) 250, 677
Eco47I GGWCC 1 cut(s) 824
Eco53kI GAGCTC 1 cut(s) 248
Eco57I CTGAAG 1 cut(s) 174
Eco88I CYCGRG 1 cut(s) 982
EcoICRI GAGCTC 1 cut(s) 248
EcoO109I RGGNCCY 1 cut(s) 325
EcoRII CCWGG 2 cut(s) 803, 1107
EcoT14I CCWWGG 2 cut(s) 590, 951
EcoT38I GRGCYC 2 cut(s) 250, 677
ErhI CCWWGG 2 cut(s) 590, 951
FaeI CATG 6 cut(s) 41, 311, 317, 491, 594, 955
FaqI GGGAC 1 cut(s) 725
FatI CATG 6 cut(s) 37, 307, 313, 487, 590, 951
FauI CCCGC 1 cut(s) 1027
FblI GTMKAC 1 cut(s) 691
Fnu4HI GCNGC 5 cut(s) 855, 879, 882, 885, 1045
FokI GGATG 6 cut(s) 17, 607, 681, 802, 824, 1072
FriOI GRGCYC 2 cut(s) 250, 677
Fsp4HI GCNGC 5 cut(s) 855, 879, 882, 885, 1045
GluI GCNGC 5 cut(s) 855, 879, 882, 885, 1045
GsuI CTGGAG 1 cut(s) 879
HaeIII GGCC 2 cut(s) 326, 616
HapII CCGG 1 cut(s) 983
HgaI GACGC 1 cut(s) 426
Hin1I GRCGYC 1 cut(s) 437
Hin1II CATG 6 cut(s) 41, 311, 317, 491, 594, 955
HincII GTYRAC 1 cut(s) 144
HindII GTYRAC 1 cut(s) 144
HindIII AAGCTT 1 cut(s) 962
HinfI GANTC 3 cut(s) 359, 713, 793
HpaII CCGG 1 cut(s) 983
HphI GGTGA 1 cut(s) 825
Hpy166II GTNNAC 4 cut(s) 137, 144, 692, 827
Hpy188I TCNGA 2 cut(s) 322, 969
Hpy188III TCNNGA 5 cut(s) 296, 699, 710, 797, 997
Hpy8I GTNNAC 4 cut(s) 137, 144, 692, 827
HpyAV CCTTC 3 cut(s) 445, 659, 772
HpyCH4III ACNGT 6 cut(s) 12, 100, 141, 203, 696, 831
HpyCH4V TGCA 4 cut(s) 32, 464, 757, 1079
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 323, 332, 754, 884
HpyF3I CTNAG 3 cut(s) 321, 331, 715
Hsp92I GRCGYC 1 cut(s) 437
Hsp92II CATG 6 cut(s) 41, 311, 317, 491, 594, 955
KspI CCGCGG 1 cut(s) 1045
Kzo9I GATC 6 cut(s) 56, 405, 605, 917, 1011, 1117
LmnI GCTCC 1 cut(s) 245
Lsp1109I GCAGC 2 cut(s) 871, 893
LweI GCATC 1 cut(s) 1088
MaeIII GTNAC 2 cut(s) 61, 831
MalI GATC 6 cut(s) 58, 407, 607, 919, 1013, 1119
MboI GATC 6 cut(s) 56, 405, 605, 917, 1011, 1117
MboII GAAGA 4 cut(s) 240, 311, 1000, 1030
MflI RGATCY 2 cut(s) 605, 1011
MhlI GDGCHC 3 cut(s) 250, 403, 677
MluCI AATT 3 cut(s) 187, 267, 819
MlyI GAGTC 1 cut(s) 707
MmeI TCCRAC 1 cut(s) 223
MroXI GAANNNNTTC 1 cut(s) 992
MseI TTAA 4 cut(s) 14, 102, 390, 515
MslI CAYNNNNRTG 1 cut(s) 312
MspA1I CMGCKG 2 cut(s) 884, 1044
MspI CCGG 1 cut(s) 983
MspR9I CCNGG 4 cut(s) 805, 983, 984, 1109
Mva1269I GAATGC 1 cut(s) 423
MvaI CCWGG 2 cut(s) 805, 1109
MvnI CGCG 1 cut(s) 1044
MwoI GCNNNNNNNGC 5 cut(s) 38, 323, 332, 754, 884
NciI CCSGG 2 cut(s) 983, 984
NcoI CCATGG 2 cut(s) 590, 951
NdeII GATC 6 cut(s) 56, 405, 605, 917, 1011, 1117
NlaIII CATG 6 cut(s) 41, 311, 317, 491, 594, 955
NlaIV GGNNCC 3 cut(s) 259, 1013, 1031
NmuCI GTSAC 2 cut(s) 61, 831
NspI RCATGY 2 cut(s) 41, 317
NspV TTCGAA 1 cut(s) 381
PaeI GCATGC 1 cut(s) 41
PctI GAATGC 1 cut(s) 423
PdmI GAANNNNTTC 1 cut(s) 992
PfeI GAWTC 2 cut(s) 359, 793
PkrI GCNGC 5 cut(s) 856, 880, 883, 886, 1046
Ple19I CGATCG 1 cut(s) 1120
PleI GAGTC 1 cut(s) 707
PpsI GAGTC 1 cut(s) 707
PsiI TTATAA 1 cut(s) 285
Psp124BI GAGCTC 1 cut(s) 250
Psp6I CCWGG 2 cut(s) 803, 1107
PspGI CCWGG 2 cut(s) 803, 1107
PspN4I GGNNCC 3 cut(s) 259, 1013, 1031
PspPI GGNCC 2 cut(s) 325, 824
PsuI RGATCY 2 cut(s) 605, 1011
PvuI CGATCG 1 cut(s) 1120
PvuII CAGCTG 1 cut(s) 884
RsaI GTAC 2 cut(s) 200, 312
RsaNI GTAC 2 cut(s) 199, 311
RseI CAYNNNNRTG 1 cut(s) 312
SacI GAGCTC 1 cut(s) 250
SacII CCGCGG 1 cut(s) 1045
SaqAI TTAA 4 cut(s) 14, 102, 390, 515
SatI GCNGC 5 cut(s) 855, 879, 882, 885, 1045
Sau3AI GATC 6 cut(s) 56, 405, 605, 917, 1011, 1117
Sau96I GGNCC 2 cut(s) 325, 824
SchI GAGTC 1 cut(s) 707
ScrFI CCNGG 4 cut(s) 805, 983, 984, 1109
SduI GDGCHC 3 cut(s) 250, 403, 677
SfaNI GCATC 1 cut(s) 1088
SfcI CTRYAG 1 cut(s) 1005
Sfr303I CCGCGG 1 cut(s) 1045
SfuI TTCGAA 1 cut(s) 381
SgrBI CCGCGG 1 cut(s) 1045
SinI GGWCC 1 cut(s) 824
SmaI CCCGGG 1 cut(s) 984
SmiMI CAYNNNNRTG 1 cut(s) 312
SphI GCATGC 1 cut(s) 41
Sse9I AATT 3 cut(s) 187, 267, 819
SsiI CCGC 6 cut(s) 854, 879, 1020, 1042, 1044, 1057
SstI GAGCTC 1 cut(s) 250
StyD4I CCNGG 4 cut(s) 803, 981, 982, 1107
StyI CCWWGG 2 cut(s) 590, 951
TaaI ACNGT 6 cut(s) 12, 100, 141, 203, 696, 831
TaqI TCGA 4 cut(s) 381, 916, 996, 1116
TaqII GACCGA 2 cut(s) 162, 518
TasI AATT 3 cut(s) 187, 267, 819
TatI WGTACW 2 cut(s) 198, 310
TauI GCSGC 3 cut(s) 857, 881, 1047
TfiI GAWTC 2 cut(s) 359, 793
Tru1I TTAA 4 cut(s) 14, 102, 390, 515
Tru9I TTAA 4 cut(s) 14, 102, 390, 515
TscAI CASTG 9 cut(s) 66, 208, 228, 630, 730, 789, 834, 910, 1075
TseFI GTSAC 2 cut(s) 61, 831
TseI GCWGC 2 cut(s) 881, 884
Tsp45I GTSAC 2 cut(s) 61, 831
TspDTI ATGAA 4 cut(s) 21, 279, 806, 831
TspGWI ACGGA 1 cut(s) 824
TspMI CCCGGG 1 cut(s) 982
TspRI CASTG 9 cut(s) 66, 208, 228, 630, 730, 789, 834, 910, 1075
VpaK11BI GGWCC 1 cut(s) 824
XapI RAATTY 2 cut(s) 187, 267
XceI RCATGY 2 cut(s) 41, 317
XmaI CCCGGG 1 cut(s) 982
XmiI GTMKAC 1 cut(s) 691
XmnI GAANNNNTTC 1 cut(s) 992
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.