RchiOBHm_Chr4g0438261

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0013194
Physical Location & Seq
Reverse (-)
61085984 .. 61088984
3001 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40640

Sequence Viewer

Length: 1134 bp
ATGATGGATGAACTGTTAAAGAACAAGATTTTTGCAACGCATGCTCTTGCTGGTGTAGGATCAGTGACATTAGGCACAGCTCTTACTTACCCTTTAGATACTGTTAAAGTCATTATTCAGGTTGGTTCAGGTTCAAGTAAACAGTTGACAACGACTGAGGTGTTCAACAGAGTTCGGTCGTTTTCAGGAAATTCAGGCTTGTACAGTGGTTTTTGGTGGTTGGCAGTGGGAAGAACTTTAGGTGTTGGAGCTCGCTTTGGAACCTATGAAATTTTGACGGCTTTTTATAAAGATGGTCGAGAAGATAACCATGTACATGCCTCTGAGGCCCTCTTAGCAGGACTTATTGCTGGTTTTGTAGAATCACTAATAACTTCTCCATTCGAACTTATTAAAGTTCGTGCCCAGATCACTTCTGCTTCTCGCATTCCAAAGTCGGCCTCTTTCACAGAGAAGGTAGCTGTTGCACCTTTGATACAGAGATTACTACATGGATATACGCCGGACCCAAAGGCATTAAACTATTCTGTCGGTCTTTTATCTACCCTAACAGCCAAACATCCCAATATGATGAGTGCCTTACAAGACTATCCATGGATGATGACTGGATCTGGGAGGCCACCATCAGTGTTCAATGTTAGGAAACCATCTCAAATCATCTCTTTGGAAGGATGGGGCTCATTATGGAGAGGTCTACGGTCAGGAGTTGTCCGGGACTCAGTTTTCAGTGGCTTATTCTTTGCTACTTGGCAATCCCTGCACCGAGCAATGCTTGACTGGAAGGCAGTGGGGATGAATCCAGAACCCAGGACGGATGATGAAATTGGTCCACTGTCACCTTTCGCTGTTAGTGTTGCGGCTGGAGTTTCTGGTTCAGTTGCCGCAGCTGCTTCTCATTGTTTCGACACTGCCAAGTGTCGATCCCAATGTGTTGTTTTGCCCAAGTTTCTCTCCATGGAGAGGAAGCTTCTGAAATGGAGAACACCAGGGAAGAGGTTCGAGAGAGCTACAGGGATCCACCCCGCCGACAGGAATCTCCTCTTCCGGGGCATTGGTTTGCGGATGGCTCGCAGTGGGATTGCATCATTTGTGATGGTGGGAAGCTATTTCCTAGCTGTGGATCGTCTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

377

Amino Acids

41.02

Weight (kDa)

9.97

Isoelectric Point (pI)

29.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 11 - 97 7.8e-13 Mitochondrial carrier protein
Mito_carr PF00153 105 - 145 1.5e-06 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15010 AT4G15010 AT4G15010
fragaria_vesca FvH4_4g29980
malus_domestica MD13G1062400.v1.1 MD16G1060700.v1.1
prunus_persica Prupe.1G287600_v2.0.a1
pyrus_communis pycom13g05480 pycom16g05290
rosa_chinensis RchiOBHm_Chr4g0438261
rosa_laevigata RLG00000006376
rosa_roxburghii Rroxscaffold_5G00379350
rosa_rugosa Rorug04G0308300
rosa_samantha Rh4AG359500 Rh4BG370300 Rh4CG384500
rosa_wichuraiana Rw0G006410 Rw0G016350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 288
AccI GTMKAC 1 cut(s) 694
AciI CCGC 4 cut(s) 857, 882, 1023, 1060
AclWI GGATC 6 cut(s) 67, 616, 915, 1009, 1022, 1128
AcsI RAATTY 2 cut(s) 190, 270
AfaI GTAC 2 cut(s) 203, 315
AfiI CCNNNNNNNGG 4 cut(s) 960, 1029, 1045, 1117
AgsI TTSAA 3 cut(s) 135, 166, 634
AjnI CCWGG 2 cut(s) 806, 985
AluBI AGCT 8 cut(s) 80, 251, 461, 887, 967, 1007, 1104, 1115
AluI AGCT 8 cut(s) 80, 251, 461, 887, 967, 1007, 1104, 1115
Alw21I GWGCWC 1 cut(s) 253
AlwI GGATC 6 cut(s) 67, 616, 915, 1009, 1022, 1128
AoxI GGCC 3 cut(s) 327, 438, 617
ApeKI GCWGC 2 cut(s) 884, 887
ApoI RAATTY 2 cut(s) 190, 270
Asp700I GAANNNNTTC 1 cut(s) 995
AspS9I GGNCC 3 cut(s) 328, 505, 827
AsuC2I CCSGG 2 cut(s) 713, 1046
AsuHPI GGTGA 1 cut(s) 828
AsuII TTCGAA 1 cut(s) 384
AvaII GGWCC 2 cut(s) 505, 827
BaeGI GKGCMC 1 cut(s) 406
BamHI GGATCC 1 cut(s) 1014
BanII GRGCYC 2 cut(s) 253, 680
Bbv12I GWGCWC 1 cut(s) 253
BbvI GCAGC 2 cut(s) 874, 896
BccI CCATC 6 cut(s) 287, 631, 655, 666, 1057, 1087
BceAI ACGGC 1 cut(s) 294
BciT130I CCWGG 2 cut(s) 808, 987
BcnI CCSGG 2 cut(s) 713, 1046
BfaI CTAG 1 cut(s) 1112
BfmI CTRYAG 1 cut(s) 1008
BglI GCCNNNNNGGC 1 cut(s) 326
BisI GCNGC 4 cut(s) 858, 882, 885, 888
BlsI GCNGC 4 cut(s) 859, 883, 886, 889
Bme1390I CCNGG 4 cut(s) 713, 808, 987, 1046
Bme18I GGWCC 2 cut(s) 505, 827
BmgT120I GGNCC 3 cut(s) 328, 505, 827
BmiI GGNNCC 3 cut(s) 262, 507, 1016
BmrFI CCNGG 4 cut(s) 713, 808, 987, 1046
BmsI GCATC 1 cut(s) 1091
BpmI CTGGAG 1 cut(s) 882
Bpu14I TTCGAA 1 cut(s) 384
BpuMI CCSGG 2 cut(s) 713, 1046
BsaJI CCNNGG 5 cut(s) 593, 806, 954, 986, 1045
Bsc4I CCNNNNNNNGG 4 cut(s) 960, 1029, 1045, 1117
Bse1I ACTGG 2 cut(s) 610, 782
Bse3DI GCAATG 1 cut(s) 774
BseBI CCWGG 2 cut(s) 808, 987
BseDI CCNNGG 5 cut(s) 593, 806, 954, 986, 1045
BseGI GGATG 7 cut(s) 13, 559, 603, 677, 798, 820, 1068
BseLI CCNNNNNNNGG 4 cut(s) 960, 1029, 1045, 1117
BseMI GCAATG 1 cut(s) 774
BseMII CTCAG 3 cut(s) 147, 315, 732
BseNI ACTGG 2 cut(s) 610, 782
BseRI GAGGAG 1 cut(s) 1028
BseSI GKGCMC 1 cut(s) 406
BseXI GCAGC 2 cut(s) 874, 896
BsgI GTGCAG 1 cut(s) 743
Bsh1285I CGRYCG 1 cut(s) 179
BshFI GGCC 3 cut(s) 329, 440, 619
BsiEI CGRYCG 1 cut(s) 179
BsiHKAI GWGCWC 1 cut(s) 253
BsiSI CCGG 3 cut(s) 503, 712, 1045
BslFI GGGAC 1 cut(s) 728
BslI CCNNNNNNNGG 4 cut(s) 960, 1029, 1045, 1117
BsmFI GGGAC 1 cut(s) 728
BsmI GAATGC 1 cut(s) 426
BsnI GGCC 3 cut(s) 329, 440, 619
Bsp119I TTCGAA 1 cut(s) 384
Bsp1286I GDGCHC 3 cut(s) 253, 406, 680
Bsp1407I TGTACA 2 cut(s) 201, 313
Bsp143I GATC 6 cut(s) 59, 408, 608, 920, 1014, 1120
Bsp19I CCATGG 2 cut(s) 593, 954
BspACI CCGC 4 cut(s) 857, 882, 1023, 1060
BspANI GGCC 3 cut(s) 329, 440, 619
BspCNI CTCAG 3 cut(s) 148, 316, 731
BspLI GGNNCC 3 cut(s) 262, 507, 1016
BspPI GGATC 6 cut(s) 67, 616, 915, 1009, 1022, 1128
BspT104I TTCGAA 1 cut(s) 384
BsrDI GCAATG 1 cut(s) 774
BsrGI TGTACA 2 cut(s) 201, 313
BsrI ACTGG 2 cut(s) 610, 782
BssECI CCNNGG 5 cut(s) 593, 806, 954, 986, 1045
BssMI GATC 6 cut(s) 59, 408, 608, 920, 1014, 1120
BssT1I CCWWGG 2 cut(s) 593, 954
Bst2UI CCWGG 2 cut(s) 808, 987
Bst4CI ACNGT 6 cut(s) 15, 103, 144, 206, 699, 834
Bst6I CTCTTC 2 cut(s) 986, 1046
BstAPI GCANNNNNTGC 2 cut(s) 41, 757
BstAUI TGTACA 2 cut(s) 201, 313
BstBI TTCGAA 1 cut(s) 384
BstC8I GCNNGC 3 cut(s) 42, 253, 1069
BstDEI CTNAG 4 cut(s) 156, 324, 334, 718
BstDSI CCRYGG 2 cut(s) 593, 954
BstF5I GGATG 7 cut(s) 13, 559, 603, 677, 798, 820, 1068
BstKTI GATC 6 cut(s) 62, 411, 611, 923, 1017, 1123
BstMBI GATC 6 cut(s) 59, 408, 608, 920, 1014, 1120
BstMCI CGRYCG 1 cut(s) 179
BstMWI GCNNNNNNNGC 5 cut(s) 41, 326, 335, 757, 887
BstNI CCWGG 2 cut(s) 808, 987
BstNSI RCATGY 2 cut(s) 44, 320
BstSCI CCNGG 4 cut(s) 711, 806, 985, 1044
BstSFI CTRYAG 1 cut(s) 1008
BstSLI GKGCMC 1 cut(s) 406
BstV1I GCAGC 2 cut(s) 874, 896
BstX2I RGATCY 2 cut(s) 608, 1014
BstYI RGATCY 2 cut(s) 608, 1014
BsuRI GGCC 3 cut(s) 329, 440, 619
BtgI CCRYGG 2 cut(s) 593, 954
BtsCI GGATG 7 cut(s) 13, 559, 603, 677, 798, 820, 1068
BtsI GCAGTG 4 cut(s) 231, 792, 906, 1078
BtsIMutI CAGTG 9 cut(s) 69, 211, 231, 633, 733, 792, 830, 906, 1078
Cac8I GCNNGC 3 cut(s) 42, 253, 1069
Cfr13I GGNCC 3 cut(s) 328, 505, 827
Csp6I GTAC 2 cut(s) 202, 314
CviAII CATG 6 cut(s) 41, 311, 317, 491, 594, 955
CviQI GTAC 2 cut(s) 202, 314
DdeI CTNAG 4 cut(s) 156, 324, 334, 718
DpnI GATC 6 cut(s) 61, 410, 610, 922, 1016, 1122
DpnII GATC 6 cut(s) 59, 408, 608, 920, 1014, 1120
Eam1104I CTCTTC 2 cut(s) 986, 1046
EarI CTCTTC 2 cut(s) 986, 1046
Ecl136II GAGCTC 1 cut(s) 251
Eco130I CCWWGG 2 cut(s) 593, 954
Eco24I GRGCYC 2 cut(s) 253, 680
Eco47I GGWCC 2 cut(s) 505, 827
Eco53kI GAGCTC 1 cut(s) 251
EcoICRI GAGCTC 1 cut(s) 251
EcoO109I RGGNCCY 1 cut(s) 328
EcoRII CCWGG 2 cut(s) 806, 985
EcoT14I CCWWGG 2 cut(s) 593, 954
EcoT38I GRGCYC 2 cut(s) 253, 680
ErhI CCWWGG 2 cut(s) 593, 954
FaeI CATG 6 cut(s) 44, 314, 320, 494, 597, 958
FaqI GGGAC 1 cut(s) 728
FatI CATG 6 cut(s) 40, 310, 316, 490, 593, 954
FauI CCCGC 1 cut(s) 1030
FblI GTMKAC 1 cut(s) 694
Fnu4HI GCNGC 4 cut(s) 858, 882, 885, 888
FokI GGATG 7 cut(s) 20, 546, 610, 684, 805, 827, 1075
FriOI GRGCYC 2 cut(s) 253, 680
Fsp4HI GCNGC 4 cut(s) 858, 882, 885, 888
FspBI CTAG 1 cut(s) 1112
GluI GCNGC 4 cut(s) 858, 882, 885, 888
GsuI CTGGAG 1 cut(s) 882
HaeIII GGCC 3 cut(s) 329, 440, 619
HapII CCGG 3 cut(s) 503, 712, 1045
Hin1II CATG 6 cut(s) 44, 314, 320, 494, 597, 958
HincII GTYRAC 1 cut(s) 147
HindII GTYRAC 1 cut(s) 147
HindIII AAGCTT 1 cut(s) 965
HinfI GANTC 4 cut(s) 362, 716, 796, 1033
HpaII CCGG 3 cut(s) 503, 712, 1045
HphI GGTGA 1 cut(s) 828
Hpy166II GTNNAC 4 cut(s) 140, 147, 695, 830
Hpy188I TCNGA 2 cut(s) 325, 972
Hpy188III TCNNGA 5 cut(s) 186, 299, 702, 800, 1000
Hpy8I GTNNAC 4 cut(s) 140, 147, 695, 830
HpyAV CCTTC 3 cut(s) 448, 662, 775
HpyCH4III ACNGT 6 cut(s) 15, 103, 144, 206, 699, 834
HpyCH4V TGCA 4 cut(s) 35, 467, 760, 1082
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 326, 335, 757, 887
HpyF3I CTNAG 4 cut(s) 156, 324, 334, 718
Hsp92II CATG 6 cut(s) 44, 314, 320, 494, 597, 958
Kzo9I GATC 6 cut(s) 59, 408, 608, 920, 1014, 1120
LmnI GCTCC 1 cut(s) 248
Lsp1109I GCAGC 2 cut(s) 874, 896
LweI GCATC 1 cut(s) 1091
MaeI CTAG 1 cut(s) 1112
MaeIII GTNAC 2 cut(s) 64, 834
MalI GATC 6 cut(s) 61, 410, 610, 922, 1016, 1122
MboI GATC 6 cut(s) 59, 408, 608, 920, 1014, 1120
MboII GAAGA 4 cut(s) 243, 314, 1003, 1033
MflI RGATCY 2 cut(s) 608, 1014
MhlI GDGCHC 3 cut(s) 253, 406, 680
MluCI AATT 3 cut(s) 190, 270, 822
MlyI GAGTC 1 cut(s) 710
MmeI TCCRAC 1 cut(s) 226
MroXI GAANNNNTTC 1 cut(s) 995
MseI TTAA 4 cut(s) 17, 105, 393, 518
MslI CAYNNNNRTG 1 cut(s) 315
MspA1I CMGCKG 1 cut(s) 887
MspI CCGG 3 cut(s) 503, 712, 1045
MspR9I CCNGG 4 cut(s) 713, 808, 987, 1046
Mva1269I GAATGC 1 cut(s) 426
MvaI CCWGG 2 cut(s) 808, 987
MwoI GCNNNNNNNGC 5 cut(s) 41, 326, 335, 757, 887
NciI CCSGG 2 cut(s) 713, 1046
NcoI CCATGG 2 cut(s) 593, 954
NdeII GATC 6 cut(s) 59, 408, 608, 920, 1014, 1120
NlaIII CATG 6 cut(s) 44, 314, 320, 494, 597, 958
NlaIV GGNNCC 3 cut(s) 262, 507, 1016
NmuCI GTSAC 2 cut(s) 64, 834
NspI RCATGY 2 cut(s) 44, 320
NspV TTCGAA 1 cut(s) 384
PaeI GCATGC 1 cut(s) 44
PctI GAATGC 1 cut(s) 426
PdmI GAANNNNTTC 1 cut(s) 995
PfeI GAWTC 3 cut(s) 362, 796, 1033
PfoI TCCNGGA 1 cut(s) 711
PkrI GCNGC 4 cut(s) 859, 883, 886, 889
PleI GAGTC 1 cut(s) 710
PpsI GAGTC 1 cut(s) 710
PsiI TTATAA 1 cut(s) 288
Psp124BI GAGCTC 1 cut(s) 253
Psp6I CCWGG 2 cut(s) 806, 985
PspGI CCWGG 2 cut(s) 806, 985
PspN4I GGNNCC 3 cut(s) 262, 507, 1016
PspPI GGNCC 3 cut(s) 328, 505, 827
PsuI RGATCY 2 cut(s) 608, 1014
PvuII CAGCTG 1 cut(s) 887
RsaI GTAC 2 cut(s) 203, 315
RsaNI GTAC 2 cut(s) 202, 314
RseI CAYNNNNRTG 1 cut(s) 315
SacI GAGCTC 1 cut(s) 253
SaqAI TTAA 4 cut(s) 17, 105, 393, 518
SatI GCNGC 4 cut(s) 858, 882, 885, 888
Sau3AI GATC 6 cut(s) 59, 408, 608, 920, 1014, 1120
Sau96I GGNCC 3 cut(s) 328, 505, 827
SchI GAGTC 1 cut(s) 710
ScrFI CCNGG 4 cut(s) 713, 808, 987, 1046
SduI GDGCHC 3 cut(s) 253, 406, 680
SfaNI GCATC 1 cut(s) 1091
SfcI CTRYAG 1 cut(s) 1008
SfuI TTCGAA 1 cut(s) 384
SinI GGWCC 2 cut(s) 505, 827
SmiMI CAYNNNNRTG 1 cut(s) 315
SphI GCATGC 1 cut(s) 44
Sse9I AATT 3 cut(s) 190, 270, 822
SsiI CCGC 4 cut(s) 857, 882, 1023, 1060
SspMI CTAG 1 cut(s) 1112
SstI GAGCTC 1 cut(s) 253
StyD4I CCNGG 4 cut(s) 711, 806, 985, 1044
StyI CCWWGG 2 cut(s) 593, 954
TaaI ACNGT 6 cut(s) 15, 103, 144, 206, 699, 834
TaqI TCGA 5 cut(s) 298, 384, 903, 919, 999
TaqII GACCGA 2 cut(s) 165, 521
TasI AATT 3 cut(s) 190, 270, 822
TatI WGTACW 2 cut(s) 201, 313
TauI GCSGC 2 cut(s) 860, 884
TfiI GAWTC 3 cut(s) 362, 796, 1033
Tru1I TTAA 4 cut(s) 17, 105, 393, 518
Tru9I TTAA 4 cut(s) 17, 105, 393, 518
TscAI CASTG 9 cut(s) 69, 211, 231, 633, 733, 792, 837, 913, 1078
TseFI GTSAC 2 cut(s) 64, 834
TseI GCWGC 2 cut(s) 884, 887
Tsp45I GTSAC 2 cut(s) 64, 834
TspDTI ATGAA 4 cut(s) 24, 282, 809, 834
TspGWI ACGGA 1 cut(s) 827
TspRI CASTG 9 cut(s) 69, 211, 231, 633, 733, 792, 837, 913, 1078
VpaK11BI GGWCC 2 cut(s) 505, 827
XapI RAATTY 2 cut(s) 190, 270
XceI RCATGY 2 cut(s) 44, 320
XmiI GTMKAC 1 cut(s) 694
XmnI GAANNNNTTC 1 cut(s) 995
XspI CTAG 1 cut(s) 1112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.