MD13G1062400.v1.1

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0013194
Physical Location & Seq
Reverse (-)
4349493 .. 4352377
2885 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1062400.v1.1.491

Sequence Viewer

Length: 1233 bp
ATGTTCCCCCGACAGAGAGCCTTCTTGGCTTGGGGCCGATATGTATTGCAGACAAGGTGTTTGTTGAAATGCCGGAAAAGGACCAATGTTTGCGTATCTCCTATGGAGGAGTTGTTAAAGAACCAGATATTTGCAATCCATGCACTTTCTGGTGTAGGTTCAGTGGCATTAGGCACAGCTCTTACTTACCCTCTAGATACAATCAAAACCCTTATTCAGGTTGGTTCAGGTTCTAGTAAGCAATTGACAACTACTCAGGTTTTAAAGAGAGTTGGATATTTTTCAGGAAATTCAGGTTTGTACAATGGTTTTCTATGGTTAGCAGCGGGAAGAACTTTGGGGTTGGGAGCTCGTTTTGGAACCTATGAAATTTTGACTGCCTTCTATAAAGATGGTCGAGAAGATAACTACGTCTACGTCTCTGAGGCCCTCCTGGCGGGACTTGTTTCTGGTGTTGTAGAATCACTGATAAGCTCCCCCTTTGAACTTATAAAACTTCGTGCCCAGGTGACCTCTGCTTCTCGCATTCCAAACTCAGCCTCTCTCCCAGGAAAGGAAGCTGTTGCACCTTTGATTCAAAGATTGCTACGTGGGTGTAGTCCGGACATGAAGGCATTAAATTCTTCTGTTGCCCTTTTATCCACCCTAACAACCAAGCATCCCAATATGATGAGTGCTTTACAAGAGTACCCATGGATGATGACAGGATCTGGGAAGCCACCATCAGTGTTCAATGTCAGGAAACCATCTGAAATCATCTATTTGGAAGGATGGGGTGCATTATGGAGAGGTCTACGGCCAGGAGTTGTTCGGGATTCAGTTTTTGGTGGCATATTCTTTTCTACTTGGCAATCTCTACACCGAGCAATGCTTGACTGGAAGGCAGTGGGGATGGATCCTGAACCCAGGTCGGATGATGAAATCGGTCCACTTTCTCCTTTGGCTATTAGTATTGCGGCCGGAATTTCTGGTTCTGTTGCTGCAGCTGCTTCTCATTGTTTTGACACTGCCAAATCTCGATCAGAATGTACTGTGCTGCCCAAGTATGTCTCAATGGAGAGGAAGCTTCTGAAATGGGGAAGACCAGGGAATAGGTTTGAGAGAGTTACAGGGATCCACCCTTCAGACAGGAATCTCCTGTTCCGTGGCCTTGGGTTACGGATGGCTCGCAGCGGGATCGCATCGTTTGTCATGGTCGGAAGCTATTTCTTGGCTGTGGATCGTCTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

411

Amino Acids

44.81

Weight (kDa)

9.91

Isoelectric Point (pI)

34.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 44 - 130 6.9e-12 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15010 AT4G15010 AT4G15010
fragaria_vesca FvH4_4g29980
malus_domestica MD13G1062400.v1.1 MD16G1060700.v1.1
prunus_persica Prupe.1G287600_v2.0.a1
pyrus_communis pycom13g05480 pycom16g05290
rosa_chinensis RchiOBHm_Chr4g0438261
rosa_laevigata RLG00000006376
rosa_roxburghii Rroxscaffold_5G00379350
rosa_rugosa Rorug04G0308300
rosa_samantha Rh4AG359500 Rh4BG370300 Rh4CG384500
rosa_wichuraiana Rw0G006410 Rw0G016350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 491
AccI GTMKAC 2 cut(s) 414, 793
AccIII TCCGGA 1 cut(s) 601
AciI CCGC 4 cut(s) 326, 437, 956, 1173
AclWI GGATC 7 cut(s) 715, 890, 903, 1108, 1121, 1184, 1227
AcoI YGGCCR 2 cut(s) 797, 957
AcsI RAATTY 4 cut(s) 289, 369, 619, 963
AcuI CTGAAG 1 cut(s) 1107
AfaI GTAC 3 cut(s) 302, 689, 1030
AfiI CCNNNNNNNGG 3 cut(s) 217, 436, 553
AgsI TTSAA 4 cut(s) 67, 485, 578, 733
AjnI CCWGG 6 cut(s) 432, 504, 547, 799, 905, 1084
AluBI AGCT 7 cut(s) 179, 350, 474, 560, 986, 1066, 1203
AluI AGCT 7 cut(s) 179, 350, 474, 560, 986, 1066, 1203
Alw21I GWGCWC 1 cut(s) 352
Alw26I GTCTC 2 cut(s) 424, 1054
AlwI GGATC 7 cut(s) 715, 890, 903, 1108, 1121, 1184, 1227
AlwNI CAGNNNCTG 1 cut(s) 710
Aor13HI TCCGGA 1 cut(s) 601
AoxI GGCC 5 cut(s) 34, 426, 797, 957, 1147
ApeKI GCWGC 6 cut(s) 323, 980, 983, 986, 1036, 1170
ApoI RAATTY 4 cut(s) 289, 369, 619, 963
ArsI GACNNNNNNTTYG 2 cut(s) 43, 75
AspS9I GGNCC 4 cut(s) 34, 81, 427, 926
AsuHPI GGTGA 1 cut(s) 520
AvaII GGWCC 2 cut(s) 81, 926
BaeGI GKGCMC 1 cut(s) 505
BaeI ACNNNNGTAYC 2 cut(s) 671, 704
BamHI GGATCC 2 cut(s) 895, 1113
BanII GRGCYC 1 cut(s) 352
BbsI GAAGAC 1 cut(s) 1087
Bbv12I GWGCWC 1 cut(s) 352
BbvI GCAGC 6 cut(s) 335, 967, 973, 995, 1023, 1182
BccI CCATC 6 cut(s) 386, 730, 754, 765, 886, 1156
BceAI ACGGC 1 cut(s) 812
BcgI CGANNNNNNTGC 2 cut(s) 1159, 1193
BciT130I CCWGG 6 cut(s) 434, 506, 549, 801, 907, 1086
BcoDI GTCTC 2 cut(s) 424, 1054
BfaI CTAG 2 cut(s) 194, 234
BfmI CTRYAG 1 cut(s) 981
BglI GCCNNNNNGGC 2 cut(s) 26, 434
BisI GCNGC 7 cut(s) 324, 957, 981, 984, 987, 1037, 1171
BlsI GCNGC 7 cut(s) 325, 958, 982, 985, 988, 1038, 1172
Bme1390I CCNGG 6 cut(s) 434, 506, 549, 801, 907, 1086
Bme18I GGWCC 2 cut(s) 81, 926
BmgT120I GGNCC 4 cut(s) 34, 81, 427, 926
BmiI GGNNCC 4 cut(s) 35, 361, 897, 1115
BmrFI CCNGG 6 cut(s) 434, 506, 549, 801, 907, 1086
BmsI GCATC 2 cut(s) 667, 1190
BpiI GAAGAC 1 cut(s) 1087
BsaAI YACGTR 1 cut(s) 590
BsaJI CCNNGG 7 cut(s) 504, 547, 692, 905, 1085, 1144, 1150
BsaWI WCCGGW 1 cut(s) 601
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bsc4I CCNNNNNNNGG 3 cut(s) 217, 436, 553
Bse1I ACTGG 1 cut(s) 881
Bse3DI GCAATG 1 cut(s) 873
BseAI TCCGGA 1 cut(s) 601
BseBI CCWGG 6 cut(s) 434, 506, 549, 801, 907, 1086
BseDI CCNNGG 7 cut(s) 504, 547, 692, 905, 1085, 1144, 1150
BseGI GGATG 6 cut(s) 658, 702, 776, 897, 919, 1167
BseLI CCNNNNNNNGG 3 cut(s) 217, 436, 553
BseMI GCAATG 1 cut(s) 873
BseMII CTCAG 3 cut(s) 269, 414, 549
BseNI ACTGG 1 cut(s) 881
BseRI GAGGAG 1 cut(s) 122
BseSI GKGCMC 1 cut(s) 505
BseX3I CGGCCG 1 cut(s) 957
BseXI GCAGC 6 cut(s) 335, 967, 973, 995, 1023, 1182
Bsh1285I CGRYCG 1 cut(s) 960
BshFI GGCC 5 cut(s) 36, 428, 799, 959, 1149
BsiEI CGRYCG 1 cut(s) 960
BsiHKAI GWGCWC 1 cut(s) 352
BsiSI CCGG 3 cut(s) 73, 602, 960
BslFI GGGAC 1 cut(s) 453
BslI CCNNNNNNNGG 3 cut(s) 217, 436, 553
BsmAI GTCTC 2 cut(s) 424, 1054
BsmBI CGTCTC 1 cut(s) 424
BsmFI GGGAC 1 cut(s) 453
BsmI GAATGC 1 cut(s) 525
BsnI GGCC 5 cut(s) 36, 428, 799, 959, 1149
Bsp1286I GDGCHC 2 cut(s) 352, 505
Bsp13I TCCGGA 1 cut(s) 601
Bsp1407I TGTACA 1 cut(s) 300
Bsp143I GATC 6 cut(s) 707, 895, 1019, 1113, 1176, 1219
Bsp19I CCATGG 1 cut(s) 692
BspACI CCGC 4 cut(s) 326, 437, 956, 1173
BspANI GGCC 5 cut(s) 36, 428, 799, 959, 1149
BspCNI CTCAG 3 cut(s) 268, 415, 548
BspEI TCCGGA 1 cut(s) 601
BspLI GGNNCC 4 cut(s) 35, 361, 897, 1115
BspMAI CTGCAG 1 cut(s) 985
BspPI GGATC 7 cut(s) 715, 890, 903, 1108, 1121, 1184, 1227
BsrDI GCAATG 1 cut(s) 873
BsrGI TGTACA 1 cut(s) 300
BsrI ACTGG 1 cut(s) 881
BssECI CCNNGG 7 cut(s) 504, 547, 692, 905, 1085, 1144, 1150
BssMI GATC 6 cut(s) 707, 895, 1019, 1113, 1176, 1219
BssT1I CCWWGG 2 cut(s) 692, 1150
Bst2UI CCWGG 6 cut(s) 434, 506, 549, 801, 907, 1086
Bst4CI ACNGT 1 cut(s) 1033
BstAPI GCANNNNNTGC 1 cut(s) 140
BstAUI TGTACA 1 cut(s) 300
BstBAI YACGTR 1 cut(s) 590
BstC8I GCNNGC 1 cut(s) 1168
BstDEI CTNAG 3 cut(s) 255, 423, 535
BstDSI CCRYGG 2 cut(s) 692, 1144
BstEII GGTNACC 1 cut(s) 508
BstENI CCTNNNNNAGG 1 cut(s) 215
BstF5I GGATG 6 cut(s) 658, 702, 776, 897, 919, 1167
BstKTI GATC 6 cut(s) 710, 898, 1022, 1116, 1179, 1222
BstMAI GTCTC 2 cut(s) 424, 1054
BstMBI GATC 6 cut(s) 707, 895, 1019, 1113, 1176, 1219
BstMCI CGRYCG 1 cut(s) 960
BstMWI GCNNNNNNNGC 4 cut(s) 26, 140, 434, 986
BstNI CCWGG 6 cut(s) 434, 506, 549, 801, 907, 1086
BstPI GGTNACC 1 cut(s) 508
BstSCI CCNGG 6 cut(s) 432, 504, 547, 799, 905, 1084
BstSFI CTRYAG 1 cut(s) 981
BstSLI GKGCMC 1 cut(s) 505
BstV1I GCAGC 6 cut(s) 335, 967, 973, 995, 1023, 1182
BstV2I GAAGAC 1 cut(s) 1087
BstX2I RGATCY 3 cut(s) 707, 895, 1113
BstYI RGATCY 3 cut(s) 707, 895, 1113
BstZI CGGCCG 1 cut(s) 957
BsuRI GGCC 5 cut(s) 36, 428, 799, 959, 1149
BtgI CCRYGG 2 cut(s) 692, 1144
BtsCI GGATG 6 cut(s) 658, 702, 776, 897, 919, 1167
BtsI GCAGTG 2 cut(s) 891, 1005
BtsIMutI CAGTG 5 cut(s) 168, 464, 732, 891, 1005
Cac8I GCNNGC 1 cut(s) 1168
CaiI CAGNNNCTG 1 cut(s) 710
Cfr13I GGNCC 4 cut(s) 34, 81, 427, 926
Csp6I GTAC 3 cut(s) 301, 688, 1029
CviAII CATG 4 cut(s) 140, 607, 693, 1192
CviQI GTAC 3 cut(s) 301, 688, 1029
DdeI CTNAG 3 cut(s) 255, 423, 535
DpnI GATC 6 cut(s) 709, 897, 1021, 1115, 1178, 1221
DpnII GATC 6 cut(s) 707, 895, 1019, 1113, 1176, 1219
DraI TTTAAA 1 cut(s) 264
EaeI YGGCCR 2 cut(s) 797, 957
EagI CGGCCG 1 cut(s) 957
Ecl136II GAGCTC 1 cut(s) 350
EclXI CGGCCG 1 cut(s) 957
Eco130I CCWWGG 2 cut(s) 692, 1150
Eco24I GRGCYC 1 cut(s) 352
Eco47I GGWCC 2 cut(s) 81, 926
Eco52I CGGCCG 1 cut(s) 957
Eco53kI GAGCTC 1 cut(s) 350
Eco57I CTGAAG 1 cut(s) 1107
Eco91I GGTNACC 1 cut(s) 508
EcoICRI GAGCTC 1 cut(s) 350
EcoNI CCTNNNNNAGG 1 cut(s) 215
EcoO109I RGGNCCY 1 cut(s) 427
EcoO65I GGTNACC 1 cut(s) 508
EcoRII CCWGG 6 cut(s) 432, 504, 547, 799, 905, 1084
EcoT14I CCWWGG 2 cut(s) 692, 1150
EcoT38I GRGCYC 1 cut(s) 352
ErhI CCWWGG 2 cut(s) 692, 1150
Esp3I CGTCTC 1 cut(s) 424
FaeI CATG 4 cut(s) 143, 610, 696, 1195
FaqI GGGAC 1 cut(s) 453
FatI CATG 4 cut(s) 139, 606, 692, 1191
FauI CCCGC 3 cut(s) 319, 430, 1166
FblI GTMKAC 2 cut(s) 414, 793
Fnu4HI GCNGC 7 cut(s) 324, 957, 981, 984, 987, 1037, 1171
FokI GGATG 6 cut(s) 645, 709, 783, 904, 926, 1174
FriOI GRGCYC 1 cut(s) 352
Fsp4HI GCNGC 7 cut(s) 324, 957, 981, 984, 987, 1037, 1171
FspBI CTAG 2 cut(s) 194, 234
GluI GCNGC 7 cut(s) 324, 957, 981, 984, 987, 1037, 1171
HaeIII GGCC 5 cut(s) 36, 428, 799, 959, 1149
HapII CCGG 3 cut(s) 73, 602, 960
Hin1II CATG 4 cut(s) 143, 610, 696, 1195
HindIII AAGCTT 1 cut(s) 1064
HinfI GANTC 4 cut(s) 461, 574, 815, 1132
HpaII CCGG 3 cut(s) 73, 602, 960
HphI GGTGA 1 cut(s) 520
Hpy166II GTNNAC 3 cut(s) 415, 794, 929
Hpy188I TCNGA 7 cut(s) 424, 751, 913, 1024, 1071, 1126, 1199
Hpy188III TCNNGA 8 cut(s) 194, 285, 398, 602, 739, 812, 899, 1017
Hpy8I GTNNAC 3 cut(s) 415, 794, 929
HpyAV CCTTC 6 cut(s) 31, 391, 604, 761, 874, 1131
HpyCH4III ACNGT 1 cut(s) 1033
HpyCH4IV ACGT 3 cut(s) 411, 417, 589
HpyCH4V TGCA 6 cut(s) 49, 134, 143, 566, 779, 983
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 140, 434, 986
HpyF3I CTNAG 3 cut(s) 255, 423, 535
HpySE526I ACGT 3 cut(s) 411, 417, 589
Hsp92II CATG 4 cut(s) 143, 610, 696, 1195
Kpn2I TCCGGA 1 cut(s) 601
Kzo9I GATC 6 cut(s) 707, 895, 1019, 1113, 1176, 1219
LmnI GCTCC 2 cut(s) 347, 479
Lsp1109I GCAGC 6 cut(s) 335, 967, 973, 995, 1023, 1182
LweI GCATC 2 cut(s) 667, 1190
MaeI CTAG 2 cut(s) 194, 234
MaeII ACGT 3 cut(s) 411, 417, 589
MaeIII GTNAC 3 cut(s) 508, 1105, 1155
MalI GATC 6 cut(s) 709, 897, 1021, 1115, 1178, 1221
MboI GATC 6 cut(s) 707, 895, 1019, 1113, 1176, 1219
MboII GAAGA 4 cut(s) 342, 413, 615, 1092
MfeI CAATTG 1 cut(s) 242
MflI RGATCY 3 cut(s) 707, 895, 1113
MhlI GDGCHC 2 cut(s) 352, 505
MluCI AATT 5 cut(s) 242, 289, 369, 619, 963
MmeI TCCRAC 3 cut(s) 253, 891, 1177
MnlI CCTC 8 cut(s) 100, 201, 418, 440, 523, 550, 782, 1053
MroI TCCGGA 1 cut(s) 601
MseI TTAA 3 cut(s) 116, 263, 617
MspA1I CMGCKG 3 cut(s) 326, 986, 1173
MspI CCGG 3 cut(s) 73, 602, 960
MspR9I CCNGG 6 cut(s) 434, 506, 549, 801, 907, 1086
MunI CAATTG 1 cut(s) 242
Mva1269I GAATGC 1 cut(s) 525
MvaI CCWGG 6 cut(s) 434, 506, 549, 801, 907, 1086
MwoI GCNNNNNNNGC 4 cut(s) 26, 140, 434, 986
NcoI CCATGG 1 cut(s) 692
NdeII GATC 6 cut(s) 707, 895, 1019, 1113, 1176, 1219
NlaIII CATG 4 cut(s) 143, 610, 696, 1195
NlaIV GGNNCC 4 cut(s) 35, 361, 897, 1115
NmuCI GTSAC 1 cut(s) 508
PctI GAATGC 1 cut(s) 525
PfeI GAWTC 4 cut(s) 461, 574, 815, 1132
PkrI GCNGC 7 cut(s) 325, 958, 982, 985, 988, 1038, 1172
Ppu21I YACGTR 1 cut(s) 590
PsiI TTATAA 1 cut(s) 491
Psp124BI GAGCTC 1 cut(s) 352
Psp6I CCWGG 6 cut(s) 432, 504, 547, 799, 905, 1084
PspEI GGTNACC 1 cut(s) 508
PspGI CCWGG 6 cut(s) 432, 504, 547, 799, 905, 1084
PspN4I GGNNCC 4 cut(s) 35, 361, 897, 1115
PspPI GGNCC 4 cut(s) 34, 81, 427, 926
PstI CTGCAG 1 cut(s) 985
PstNI CAGNNNCTG 1 cut(s) 710
PsuI RGATCY 3 cut(s) 707, 895, 1113
PvuII CAGCTG 1 cut(s) 986
RsaI GTAC 3 cut(s) 302, 689, 1030
RsaNI GTAC 3 cut(s) 301, 688, 1029
SacI GAGCTC 1 cut(s) 352
SaqAI TTAA 3 cut(s) 116, 263, 617
SatI GCNGC 7 cut(s) 324, 957, 981, 984, 987, 1037, 1171
Sau3AI GATC 6 cut(s) 707, 895, 1019, 1113, 1176, 1219
Sau96I GGNCC 4 cut(s) 34, 81, 427, 926
ScrFI CCNGG 6 cut(s) 434, 506, 549, 801, 907, 1086
SduI GDGCHC 2 cut(s) 352, 505
SfaNI GCATC 2 cut(s) 667, 1190
SfcI CTRYAG 1 cut(s) 981
SinI GGWCC 2 cut(s) 81, 926
Sse9I AATT 5 cut(s) 242, 289, 369, 619, 963
SsiI CCGC 4 cut(s) 326, 437, 956, 1173
SspMI CTAG 2 cut(s) 194, 234
SstI GAGCTC 1 cut(s) 352
StyD4I CCNGG 6 cut(s) 432, 504, 547, 799, 905, 1084
StyI CCWWGG 2 cut(s) 692, 1150
TaaI ACNGT 1 cut(s) 1033
TaiI ACGT 3 cut(s) 414, 420, 592
TaqI TCGA 2 cut(s) 397, 1018
TaqII GACCGA 1 cut(s) 914
TasI AATT 5 cut(s) 242, 289, 369, 619, 963
TatI WGTACW 2 cut(s) 300, 1028
TauI GCSGC 1 cut(s) 959
TfiI GAWTC 4 cut(s) 461, 574, 815, 1132
Tru1I TTAA 3 cut(s) 116, 263, 617
Tru9I TTAA 3 cut(s) 116, 263, 617
TscAI CASTG 5 cut(s) 168, 471, 732, 891, 1012
TseFI GTSAC 1 cut(s) 508
TseI GCWGC 6 cut(s) 323, 980, 983, 986, 1036, 1170
Tsp45I GTSAC 1 cut(s) 508
TspDTI ATGAA 3 cut(s) 381, 623, 933
TspGWI ACGGA 2 cut(s) 1133, 1174
TspRI CASTG 5 cut(s) 168, 471, 732, 891, 1012
VpaK11BI GGWCC 2 cut(s) 81, 926
XagI CCTNNNNNAGG 1 cut(s) 215
XapI RAATTY 4 cut(s) 289, 369, 619, 963
XbaI TCTAGA 1 cut(s) 193
XcmI CCANNNNNNNNNTGG 1 cut(s) 146
XmiI GTMKAC 2 cut(s) 414, 793
XspI CTAG 2 cut(s) 194, 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.