Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0013194

Physical Location & Seq

Genomic Coordinates Reverse (-)

3646612 .. 3647308

Gene Structure 697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g05480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGCTTGACTGGAAGGCAGTGGGGATGGATCCTGAACCCAGGTCGGATGATGAAATCGGTCCACTTTCTCCTTTGGCTATTAGTATTGCAGCAGGAATTTCTGGTTCTGTTGCTGCGGCTGCTTCTCATTGTTTTGACACTGCCAAATCTCGATCAGAATGTACTGTGCTGCCCAAGTATGTCTCAATGGAGAGGAAGCTTCTGAAATGGGGAAGACCAGGAAATAGGTTTGAGAGAGTTACAGGGATCCACCCTTCAGACAGGAATCTCCTGTTCCGCGGCCTTGGGTTACGGATGGCTCGCAGCGGGATCGCATCATTCGTCATGGTCGGAAGCTATTTCTTGGCTGTGGATCGTCTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

122

Amino Acids

13.15

Weight (kDa)

9.44

Isoelectric Point (pI)

35.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013194)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15010 AT4G15010 AT4G15010
fragaria_vesca	FvH4_4g29980
malus_domestica	MD13G1062400.v1.1 MD16G1060700.v1.1
prunus_persica	Prupe.1G287600_v2.0.a1
pyrus_communis	pycom13g05480 pycom16g05290
rosa_chinensis	RchiOBHm_Chr4g0438261
rosa_laevigata	RLG00000006376
rosa_roxburghii	Rroxscaffold_5G00379350
rosa_rugosa	Rorug04G0308300
rosa_samantha	Rh4AG359500 Rh4BG370300 Rh4CG384500
rosa_wichuraiana	Rw0G006410 Rw0G016350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	279
AciI	CCGC	4 cut(s)	116, 277, 279, 306
AclWI	GGATC	6 cut(s)	23, 36, 241, 254, 317, 360
AcsI	RAATTY	1 cut(s)	96
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	1 cut(s)	163
AjnI	CCWGG	2 cut(s)	38, 217
AluBI	AGCT	2 cut(s)	199, 336
AluI	AGCT	2 cut(s)	199, 336
Alw26I	GTCTC	1 cut(s)	187
AlwI	GGATC	6 cut(s)	23, 36, 241, 254, 317, 360
AoxI	GGCC	1 cut(s)	280
ApeKI	GCWGC	5 cut(s)	89, 113, 119, 169, 303
ApoI	RAATTY	1 cut(s)	96
AspS9I	GGNCC	1 cut(s)	59
AvaII	GGWCC	1 cut(s)	59
BamHI	GGATCC	2 cut(s)	28, 246
BbsI	GAAGAC	1 cut(s)	220
BbvI	GCAGC	5 cut(s)	100, 101, 106, 156, 315
BccI	CCATC	2 cut(s)	19, 289
BcgI	CGANNNNNNTGC	2 cut(s)	292, 326
BciT130I	CCWGG	2 cut(s)	40, 219
BcoDI	GTCTC	1 cut(s)	187
BisI	GCNGC	7 cut(s)	90, 114, 117, 120, 170, 280, 304
BlsI	GCNGC	7 cut(s)	91, 115, 118, 121, 171, 281, 305
Bme1390I	CCNGG	2 cut(s)	40, 219
Bme18I	GGWCC	1 cut(s)	59
BmgT120I	GGNCC	1 cut(s)	59
BmiI	GGNNCC	2 cut(s)	30, 248
BmrFI	CCNGG	2 cut(s)	40, 219
BmsI	GCATC	1 cut(s)	323
BpiI	GAAGAC	1 cut(s)	220
BsaJI	CCNNGG	3 cut(s)	38, 277, 283
Bse1I	ACTGG	1 cut(s)	14
BseBI	CCWGG	2 cut(s)	40, 219
BseDI	CCNNGG	3 cut(s)	38, 277, 283
BseGI	GGATG	3 cut(s)	30, 52, 300
BseNI	ACTGG	1 cut(s)	14
BseXI	GCAGC	5 cut(s)	100, 101, 106, 156, 315
Bsh1236I	CGCG	1 cut(s)	279
BshFI	GGCC	1 cut(s)	282
BsmAI	GTCTC	1 cut(s)	187
BsnI	GGCC	1 cut(s)	282
Bsp143I	GATC	5 cut(s)	28, 152, 246, 309, 352
BspACI	CCGC	4 cut(s)	116, 277, 279, 306
BspANI	GGCC	1 cut(s)	282
BspFNI	CGCG	1 cut(s)	279
BspLI	GGNNCC	2 cut(s)	30, 248
BspPI	GGATC	6 cut(s)	23, 36, 241, 254, 317, 360
BsrI	ACTGG	1 cut(s)	14
BssECI	CCNNGG	3 cut(s)	38, 277, 283
BssMI	GATC	5 cut(s)	28, 152, 246, 309, 352
BssT1I	CCWWGG	1 cut(s)	283
Bst2UI	CCWGG	2 cut(s)	40, 219
Bst4CI	ACNGT	1 cut(s)	166
BstC8I	GCNNGC	1 cut(s)	301
BstDSI	CCRYGG	1 cut(s)	277
BstF5I	GGATG	3 cut(s)	30, 52, 300
BstFNI	CGCG	1 cut(s)	279
BstKTI	GATC	5 cut(s)	31, 155, 249, 312, 355
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	5 cut(s)	28, 152, 246, 309, 352
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNI	CCWGG	2 cut(s)	40, 219
BstSCI	CCNGG	2 cut(s)	38, 217
BstUI	CGCG	1 cut(s)	279
BstV1I	GCAGC	5 cut(s)	100, 101, 106, 156, 315
BstV2I	GAAGAC	1 cut(s)	220
BstX2I	RGATCY	2 cut(s)	28, 246
BstYI	RGATCY	2 cut(s)	28, 246
BsuRI	GGCC	1 cut(s)	282
BtgI	CCRYGG	1 cut(s)	277
BtsCI	GGATG	3 cut(s)	30, 52, 300
BtsI	GCAGTG	2 cut(s)	24, 138
BtsIMutI	CAGTG	2 cut(s)	24, 138
Cac8I	GCNNGC	1 cut(s)	301
Cfr13I	GGNCC	1 cut(s)	59
Cfr42I	CCGCGG	1 cut(s)	280
Csp6I	GTAC	1 cut(s)	162
CviAII	CATG	1 cut(s)	325
CviJI	RGCY	7 cut(s)	77, 119, 199, 282, 299, 336, 347
CviKI_1	RGCY	7 cut(s)	77, 119, 199, 282, 299, 336, 347
CviQI	GTAC	1 cut(s)	162
DpnI	GATC	5 cut(s)	30, 154, 248, 311, 354
DpnII	GATC	5 cut(s)	28, 152, 246, 309, 352
Eco130I	CCWWGG	1 cut(s)	283
Eco47I	GGWCC	1 cut(s)	59
Eco57I	CTGAAG	1 cut(s)	240
EcoRII	CCWGG	2 cut(s)	38, 217
EcoT14I	CCWWGG	1 cut(s)	283
ErhI	CCWWGG	1 cut(s)	283
FaeI	CATG	1 cut(s)	328
FaiI	YATR	2 cut(s)	180, 326
FatI	CATG	1 cut(s)	324
FauI	CCCGC	1 cut(s)	299
Fnu4HI	GCNGC	7 cut(s)	90, 114, 117, 120, 170, 280, 304
FokI	GGATG	3 cut(s)	37, 59, 307
Fsp4HI	GCNGC	7 cut(s)	90, 114, 117, 120, 170, 280, 304
GluI	GCNGC	7 cut(s)	90, 114, 117, 120, 170, 280, 304
HaeIII	GGCC	1 cut(s)	282
Hin1II	CATG	1 cut(s)	328
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	1 cut(s)	265
Hpy166II	GTNNAC	1 cut(s)	62
Hpy188I	TCNGA	5 cut(s)	46, 157, 204, 259, 332
Hpy188III	TCNNGA	2 cut(s)	32, 150
Hpy8I	GTNNAC	1 cut(s)	62
HpyAV	CCTTC	2 cut(s)	7, 264
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4V	TGCA	1 cut(s)	89
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
Hsp92II	CATG	1 cut(s)	328
KspI	CCGCGG	1 cut(s)	280
Kzo9I	GATC	5 cut(s)	28, 152, 246, 309, 352
Lsp1109I	GCAGC	5 cut(s)	100, 101, 106, 156, 315
LweI	GCATC	1 cut(s)	323
MaeIII	GTNAC	2 cut(s)	238, 288
MalI	GATC	5 cut(s)	30, 154, 248, 311, 354
MboI	GATC	5 cut(s)	28, 152, 246, 309, 352
MboII	GAAGA	1 cut(s)	225
MflI	RGATCY	2 cut(s)	28, 246
MluCI	AATT	1 cut(s)	96
MmeI	TCCRAC	2 cut(s)	24, 310
MnlI	CCTC	1 cut(s)	186
MspA1I	CMGCKG	2 cut(s)	279, 306
MspR9I	CCNGG	2 cut(s)	40, 219
MvaI	CCWGG	2 cut(s)	40, 219
MvnI	CGCG	1 cut(s)	279
MwoI	GCNNNNNNNGC	1 cut(s)	119
NdeII	GATC	5 cut(s)	28, 152, 246, 309, 352
NlaIII	CATG	1 cut(s)	328
NlaIV	GGNNCC	2 cut(s)	30, 248
PcsI	WCGNNNNNNNCGW	1 cut(s)	318
PfeI	GAWTC	1 cut(s)	265
PkrI	GCNGC	7 cut(s)	91, 115, 118, 121, 171, 281, 305
Psp6I	CCWGG	2 cut(s)	38, 217
PspGI	CCWGG	2 cut(s)	38, 217
PspN4I	GGNNCC	2 cut(s)	30, 248
PspPI	GGNCC	1 cut(s)	59
PsuI	RGATCY	2 cut(s)	28, 246
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
SacII	CCGCGG	1 cut(s)	280
SatI	GCNGC	7 cut(s)	90, 114, 117, 120, 170, 280, 304
Sau3AI	GATC	5 cut(s)	28, 152, 246, 309, 352
Sau96I	GGNCC	1 cut(s)	59
ScrFI	CCNGG	2 cut(s)	40, 219
SetI	ASST	4 cut(s)	44, 201, 230, 338
SfaNI	GCATC	1 cut(s)	323
Sfr303I	CCGCGG	1 cut(s)	280
SgrBI	CCGCGG	1 cut(s)	280
SinI	GGWCC	1 cut(s)	59
Sse9I	AATT	1 cut(s)	96
SsiI	CCGC	4 cut(s)	116, 277, 279, 306
StyD4I	CCNGG	2 cut(s)	38, 217
StyI	CCWWGG	1 cut(s)	283
TaaI	ACNGT	1 cut(s)	166
TaqI	TCGA	1 cut(s)	151
TaqII	GACCGA	1 cut(s)	47
TasI	AATT	1 cut(s)	96
TatI	WGTACW	1 cut(s)	161
TauI	GCSGC	2 cut(s)	119, 282
TfiI	GAWTC	1 cut(s)	265
TscAI	CASTG	2 cut(s)	24, 145
TseI	GCWGC	5 cut(s)	89, 113, 119, 169, 303
TspDTI	ATGAA	1 cut(s)	66
TspGWI	ACGGA	1 cut(s)	307
TspRI	CASTG	2 cut(s)	24, 145
VpaK11BI	GGWCC	1 cut(s)	59
XapI	RAATTY	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.