Rw0G006410

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00245
OG0013194
Physical Location & Seq
Reverse (-)
158498 .. 160807
2310 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G006410.1

Sequence Viewer

Length: 1197 bp
ATGCCTCAAAGAACCAAACTTTGCCTATTTCGTATTGGGGGTCTTTTTTTTTTTTTTTTTTTGCTTATGGATGAAATGTTAAAGAACAAGATTTTTGCAACGCATGCTCTTGCTGGTGTAGGATCAGTGACATTAGGCACAGCTCTTACTTACCCTTTAGATACTGTTAAAGTCATTATACAGGTTGGTTCAGGTTCAAGTAAACAGTTGACAACGACTGAGGTGTTCAACAGAGTTTGGTCGTTTTCAGGAAATTCAGGCTTGTACAGTGGTTTTTGGTGGTTGGCAGTGGGAAGAACTTTAGGTGTTGGAGCTCGCTTTGGAACCTATGAAATTTTGACGGCTTTTTATAAAGATGGTCGAGAAGATAACCATGTACATGCCTCTGAGGCCCTCTTAGCAGGACTTATTGCTGGTTTTGTAGAATCACTAATAACTTCTCCATTCGAACTTATTAAAGTTCGTGCCCAGATCACTTCTGCTTCTCGCATTCCAAAGTCGGCCTCTTTCACAGAGAAGGTAGCTGTTGCACCTTTGATACAGAGATTACTACATGGATATACGCCGGACCCAAAGGCATTAAACTATTCTGTCGGTCTTTTATCCACCCTAACAACCAAACATCCCAATATGATGAGTGCCTTACAAGACTATCCATGGATGATGACTGGATCTGGGAGGCCACCATCAGTGTTCAATGTTAGGAAACCATCTCAAATCATCTCTTTGGAAGGATGGGGCTCATTATGGAGAGGTCTACAGTCAGGAGTTGTCCGGGACTCAGTTTTCAGTGGCTTATTCTTTGCTACTTGGCAATCCCTGCACCGAGCAATGCTTGACTGGAAGGCAGTGGGGATGAATCCAGAACCCAGGACGGATGATGAAATTGGTCCACTGTCACCTTTCGCTGTTAGTGTTGCGGCTGGAGTTTCTGGTTCAGTTGCCGCAGCTGCTTCTCATTGTTTCGACACTGCCAAGTGTCGATCCCAATGTGTTGTTTTGCCCAAGTTTCTCTCCATGGAGAGGAAGCTTCTGAAATGGAGAACACCAGGGAAGAGGTTCGAGAGAGCTACAGGGATCCACCCCGCCGACAGGAATCTCCTCTTCCGGGGCATTGGTTTGCGGATGGCTCGCAGTGGGATTGCATCATTCGTAATGGTGGGAAGCTATTTCCTAGCTGTGGATCGTCTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

398

Amino Acids

43.62

Weight (kDa)

9.95

Isoelectric Point (pI)

29.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 32 - 118 1.1e-13 Mitochondrial carrier protein
Mito_carr PF00153 126 - 166 1.7e-06 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15010 AT4G15010 AT4G15010
fragaria_vesca FvH4_4g29980
malus_domestica MD13G1062400.v1.1 MD16G1060700.v1.1
prunus_persica Prupe.1G287600_v2.0.a1
pyrus_communis pycom13g05480 pycom16g05290
rosa_chinensis RchiOBHm_Chr4g0438261
rosa_laevigata RLG00000006376
rosa_roxburghii Rroxscaffold_5G00379350
rosa_rugosa Rorug04G0308300
rosa_samantha Rh4AG359500 Rh4BG370300 Rh4CG384500
rosa_wichuraiana Rw0G006410 Rw0G016350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 351
AccI GTMKAC 1 cut(s) 757
AciI CCGC 4 cut(s) 920, 945, 1086, 1123
AclWI GGATC 6 cut(s) 130, 679, 978, 1072, 1085, 1191
AcsI RAATTY 2 cut(s) 253, 333
AfaI GTAC 2 cut(s) 266, 378
AfiI CCNNNNNNNGG 4 cut(s) 1023, 1092, 1108, 1180
AgsI TTSAA 3 cut(s) 198, 229, 697
AjnI CCWGG 2 cut(s) 869, 1048
AluBI AGCT 8 cut(s) 143, 314, 524, 950, 1030, 1070, 1167, 1178
AluI AGCT 8 cut(s) 143, 314, 524, 950, 1030, 1070, 1167, 1178
Alw21I GWGCWC 1 cut(s) 316
AlwI GGATC 6 cut(s) 130, 679, 978, 1072, 1085, 1191
AoxI GGCC 3 cut(s) 390, 501, 680
ApeKI GCWGC 2 cut(s) 947, 950
ApoI RAATTY 2 cut(s) 253, 333
Asp700I GAANNNNTTC 1 cut(s) 1058
AspS9I GGNCC 3 cut(s) 391, 568, 890
AsuC2I CCSGG 2 cut(s) 776, 1109
AsuHPI GGTGA 1 cut(s) 891
AsuII TTCGAA 1 cut(s) 447
AvaII GGWCC 2 cut(s) 568, 890
BaeGI GKGCMC 1 cut(s) 469
BamHI GGATCC 1 cut(s) 1077
BanII GRGCYC 2 cut(s) 316, 743
Bbv12I GWGCWC 1 cut(s) 316
BbvI GCAGC 2 cut(s) 937, 959
BccI CCATC 5 cut(s) 350, 694, 718, 729, 1120
BceAI ACGGC 1 cut(s) 357
BciT130I CCWGG 2 cut(s) 871, 1050
BcnI CCSGG 2 cut(s) 776, 1109
BfaI CTAG 1 cut(s) 1175
BfmI CTRYAG 2 cut(s) 758, 1071
BglI GCCNNNNNGGC 1 cut(s) 389
BisI GCNGC 4 cut(s) 921, 945, 948, 951
BlsI GCNGC 4 cut(s) 922, 946, 949, 952
Bme1390I CCNGG 4 cut(s) 776, 871, 1050, 1109
Bme18I GGWCC 2 cut(s) 568, 890
BmgT120I GGNCC 3 cut(s) 391, 568, 890
BmiI GGNNCC 3 cut(s) 325, 570, 1079
BmrFI CCNGG 4 cut(s) 776, 871, 1050, 1109
BmsI GCATC 1 cut(s) 1154
BpmI CTGGAG 1 cut(s) 945
Bpu14I TTCGAA 1 cut(s) 447
BpuMI CCSGG 2 cut(s) 776, 1109
BsaJI CCNNGG 5 cut(s) 656, 869, 1017, 1049, 1108
Bsc4I CCNNNNNNNGG 4 cut(s) 1023, 1092, 1108, 1180
Bse1I ACTGG 2 cut(s) 673, 845
Bse3DI GCAATG 1 cut(s) 837
BseBI CCWGG 2 cut(s) 871, 1050
BseDI CCNNGG 5 cut(s) 656, 869, 1017, 1049, 1108
BseGI GGATG 7 cut(s) 76, 622, 666, 740, 861, 883, 1131
BseLI CCNNNNNNNGG 4 cut(s) 1023, 1092, 1108, 1180
BseMI GCAATG 1 cut(s) 837
BseMII CTCAG 3 cut(s) 210, 378, 795
BseNI ACTGG 2 cut(s) 673, 845
BseRI GAGGAG 1 cut(s) 1091
BseSI GKGCMC 1 cut(s) 469
BseXI GCAGC 2 cut(s) 937, 959
BsgI GTGCAG 1 cut(s) 806
BshFI GGCC 3 cut(s) 392, 503, 682
BsiHKAI GWGCWC 1 cut(s) 316
BsiSI CCGG 3 cut(s) 566, 775, 1108
BslFI GGGAC 1 cut(s) 791
BslI CCNNNNNNNGG 4 cut(s) 1023, 1092, 1108, 1180
BsmFI GGGAC 1 cut(s) 791
BsmI GAATGC 1 cut(s) 489
BsnI GGCC 3 cut(s) 392, 503, 682
Bsp119I TTCGAA 1 cut(s) 447
Bsp1286I GDGCHC 3 cut(s) 316, 469, 743
Bsp1407I TGTACA 2 cut(s) 264, 376
Bsp143I GATC 6 cut(s) 122, 471, 671, 983, 1077, 1183
Bsp19I CCATGG 2 cut(s) 656, 1017
BspACI CCGC 4 cut(s) 920, 945, 1086, 1123
BspANI GGCC 3 cut(s) 392, 503, 682
BspCNI CTCAG 3 cut(s) 211, 379, 794
BspLI GGNNCC 3 cut(s) 325, 570, 1079
BspPI GGATC 6 cut(s) 130, 679, 978, 1072, 1085, 1191
BspT104I TTCGAA 1 cut(s) 447
BsrDI GCAATG 1 cut(s) 837
BsrGI TGTACA 2 cut(s) 264, 376
BsrI ACTGG 2 cut(s) 673, 845
BssECI CCNNGG 5 cut(s) 656, 869, 1017, 1049, 1108
BssMI GATC 6 cut(s) 122, 471, 671, 983, 1077, 1183
BssT1I CCWWGG 2 cut(s) 656, 1017
Bst2UI CCWGG 2 cut(s) 871, 1050
Bst4CI ACNGT 5 cut(s) 166, 207, 269, 762, 897
Bst6I CTCTTC 2 cut(s) 1049, 1109
BstAPI GCANNNNNTGC 2 cut(s) 104, 820
BstAUI TGTACA 2 cut(s) 264, 376
BstBI TTCGAA 1 cut(s) 447
BstC8I GCNNGC 3 cut(s) 105, 316, 1132
BstDEI CTNAG 5 cut(s) 219, 387, 397, 781, 1194
BstDSI CCRYGG 2 cut(s) 656, 1017
BstF5I GGATG 7 cut(s) 76, 622, 666, 740, 861, 883, 1131
BstKTI GATC 6 cut(s) 125, 474, 674, 986, 1080, 1186
BstMBI GATC 6 cut(s) 122, 471, 671, 983, 1077, 1183
BstMWI GCNNNNNNNGC 5 cut(s) 104, 389, 398, 820, 950
BstNI CCWGG 2 cut(s) 871, 1050
BstNSI RCATGY 2 cut(s) 107, 383
BstSCI CCNGG 4 cut(s) 774, 869, 1048, 1107
BstSFI CTRYAG 2 cut(s) 758, 1071
BstSLI GKGCMC 1 cut(s) 469
BstV1I GCAGC 2 cut(s) 937, 959
BstX2I RGATCY 2 cut(s) 671, 1077
BstYI RGATCY 2 cut(s) 671, 1077
BsuRI GGCC 3 cut(s) 392, 503, 682
BtgI CCRYGG 2 cut(s) 656, 1017
BtsCI GGATG 7 cut(s) 76, 622, 666, 740, 861, 883, 1131
BtsI GCAGTG 4 cut(s) 294, 855, 969, 1141
BtsIMutI CAGTG 9 cut(s) 132, 274, 294, 696, 796, 855, 893, 969, 1141
Cac8I GCNNGC 3 cut(s) 105, 316, 1132
Cfr13I GGNCC 3 cut(s) 391, 568, 890
Csp6I GTAC 2 cut(s) 265, 377
CviAII CATG 6 cut(s) 104, 374, 380, 554, 657, 1018
CviQI GTAC 2 cut(s) 265, 377
DdeI CTNAG 5 cut(s) 219, 387, 397, 781, 1194
DpnI GATC 6 cut(s) 124, 473, 673, 985, 1079, 1185
DpnII GATC 6 cut(s) 122, 471, 671, 983, 1077, 1183
Eam1104I CTCTTC 2 cut(s) 1049, 1109
EarI CTCTTC 2 cut(s) 1049, 1109
Ecl136II GAGCTC 1 cut(s) 314
Eco130I CCWWGG 2 cut(s) 656, 1017
Eco24I GRGCYC 2 cut(s) 316, 743
Eco47I GGWCC 2 cut(s) 568, 890
Eco53kI GAGCTC 1 cut(s) 314
EcoICRI GAGCTC 1 cut(s) 314
EcoO109I RGGNCCY 1 cut(s) 391
EcoRII CCWGG 2 cut(s) 869, 1048
EcoT14I CCWWGG 2 cut(s) 656, 1017
EcoT38I GRGCYC 2 cut(s) 316, 743
ErhI CCWWGG 2 cut(s) 656, 1017
FaeI CATG 6 cut(s) 107, 377, 383, 557, 660, 1021
FaqI GGGAC 1 cut(s) 791
FatI CATG 6 cut(s) 103, 373, 379, 553, 656, 1017
FauI CCCGC 1 cut(s) 1093
FblI GTMKAC 1 cut(s) 757
Fnu4HI GCNGC 4 cut(s) 921, 945, 948, 951
FokI GGATG 7 cut(s) 83, 609, 673, 747, 868, 890, 1138
FriOI GRGCYC 2 cut(s) 316, 743
Fsp4HI GCNGC 4 cut(s) 921, 945, 948, 951
FspBI CTAG 1 cut(s) 1175
GluI GCNGC 4 cut(s) 921, 945, 948, 951
GsuI CTGGAG 1 cut(s) 945
HaeIII GGCC 3 cut(s) 392, 503, 682
HapII CCGG 3 cut(s) 566, 775, 1108
Hin1II CATG 6 cut(s) 107, 377, 383, 557, 660, 1021
HincII GTYRAC 1 cut(s) 210
HindII GTYRAC 1 cut(s) 210
HindIII AAGCTT 1 cut(s) 1028
HinfI GANTC 4 cut(s) 425, 779, 859, 1096
HpaII CCGG 3 cut(s) 566, 775, 1108
HphI GGTGA 1 cut(s) 891
Hpy166II GTNNAC 4 cut(s) 203, 210, 758, 893
Hpy188I TCNGA 2 cut(s) 388, 1035
Hpy188III TCNNGA 5 cut(s) 249, 362, 765, 863, 1063
Hpy8I GTNNAC 4 cut(s) 203, 210, 758, 893
HpyAV CCTTC 3 cut(s) 511, 725, 838
HpyCH4III ACNGT 5 cut(s) 166, 207, 269, 762, 897
HpyCH4V TGCA 4 cut(s) 98, 530, 823, 1145
HpyF10VI GCNNNNNNNGC 5 cut(s) 104, 389, 398, 820, 950
HpyF3I CTNAG 5 cut(s) 219, 387, 397, 781, 1194
Hsp92II CATG 6 cut(s) 107, 377, 383, 557, 660, 1021
Kzo9I GATC 6 cut(s) 122, 471, 671, 983, 1077, 1183
LmnI GCTCC 1 cut(s) 311
Lsp1109I GCAGC 2 cut(s) 937, 959
LweI GCATC 1 cut(s) 1154
MaeI CTAG 1 cut(s) 1175
MaeIII GTNAC 2 cut(s) 127, 897
MalI GATC 6 cut(s) 124, 473, 673, 985, 1079, 1185
MboI GATC 6 cut(s) 122, 471, 671, 983, 1077, 1183
MboII GAAGA 4 cut(s) 306, 377, 1066, 1096
MflI RGATCY 2 cut(s) 671, 1077
MhlI GDGCHC 3 cut(s) 316, 469, 743
MluCI AATT 3 cut(s) 253, 333, 885
MlyI GAGTC 1 cut(s) 773
MmeI TCCRAC 1 cut(s) 289
MroXI GAANNNNTTC 1 cut(s) 1058
MseI TTAA 4 cut(s) 80, 168, 456, 581
MslI CAYNNNNRTG 1 cut(s) 378
MspA1I CMGCKG 1 cut(s) 950
MspI CCGG 3 cut(s) 566, 775, 1108
MspR9I CCNGG 4 cut(s) 776, 871, 1050, 1109
Mva1269I GAATGC 1 cut(s) 489
MvaI CCWGG 2 cut(s) 871, 1050
MwoI GCNNNNNNNGC 5 cut(s) 104, 389, 398, 820, 950
NciI CCSGG 2 cut(s) 776, 1109
NcoI CCATGG 2 cut(s) 656, 1017
NdeII GATC 6 cut(s) 122, 471, 671, 983, 1077, 1183
NlaIII CATG 6 cut(s) 107, 377, 383, 557, 660, 1021
NlaIV GGNNCC 3 cut(s) 325, 570, 1079
NmuCI GTSAC 2 cut(s) 127, 897
NspI RCATGY 2 cut(s) 107, 383
NspV TTCGAA 1 cut(s) 447
PaeI GCATGC 1 cut(s) 107
PctI GAATGC 1 cut(s) 489
PdmI GAANNNNTTC 1 cut(s) 1058
PfeI GAWTC 3 cut(s) 425, 859, 1096
PfoI TCCNGGA 1 cut(s) 774
PkrI GCNGC 4 cut(s) 922, 946, 949, 952
PleI GAGTC 1 cut(s) 773
PpsI GAGTC 1 cut(s) 773
PsiI TTATAA 1 cut(s) 351
Psp124BI GAGCTC 1 cut(s) 316
Psp6I CCWGG 2 cut(s) 869, 1048
PspGI CCWGG 2 cut(s) 869, 1048
PspN4I GGNNCC 3 cut(s) 325, 570, 1079
PspPI GGNCC 3 cut(s) 391, 568, 890
PsuI RGATCY 2 cut(s) 671, 1077
PvuII CAGCTG 1 cut(s) 950
RsaI GTAC 2 cut(s) 266, 378
RsaNI GTAC 2 cut(s) 265, 377
RseI CAYNNNNRTG 1 cut(s) 378
SacI GAGCTC 1 cut(s) 316
SaqAI TTAA 4 cut(s) 80, 168, 456, 581
SatI GCNGC 4 cut(s) 921, 945, 948, 951
Sau3AI GATC 6 cut(s) 122, 471, 671, 983, 1077, 1183
Sau96I GGNCC 3 cut(s) 391, 568, 890
SchI GAGTC 1 cut(s) 773
ScrFI CCNGG 4 cut(s) 776, 871, 1050, 1109
SduI GDGCHC 3 cut(s) 316, 469, 743
SfaNI GCATC 1 cut(s) 1154
SfcI CTRYAG 2 cut(s) 758, 1071
SfuI TTCGAA 1 cut(s) 447
SinI GGWCC 2 cut(s) 568, 890
SmiMI CAYNNNNRTG 1 cut(s) 378
SphI GCATGC 1 cut(s) 107
Sse9I AATT 3 cut(s) 253, 333, 885
SsiI CCGC 4 cut(s) 920, 945, 1086, 1123
SspMI CTAG 1 cut(s) 1175
SstI GAGCTC 1 cut(s) 316
StyD4I CCNGG 4 cut(s) 774, 869, 1048, 1107
StyI CCWWGG 2 cut(s) 656, 1017
TaaI ACNGT 5 cut(s) 166, 207, 269, 762, 897
TaqI TCGA 5 cut(s) 361, 447, 966, 982, 1062
TaqII GACCGA 1 cut(s) 584
TasI AATT 3 cut(s) 253, 333, 885
TatI WGTACW 2 cut(s) 264, 376
TauI GCSGC 2 cut(s) 923, 947
TfiI GAWTC 3 cut(s) 425, 859, 1096
Tru1I TTAA 4 cut(s) 80, 168, 456, 581
Tru9I TTAA 4 cut(s) 80, 168, 456, 581
TscAI CASTG 9 cut(s) 132, 274, 294, 696, 796, 855, 900, 976, 1141
TseFI GTSAC 2 cut(s) 127, 897
TseI GCWGC 2 cut(s) 947, 950
Tsp45I GTSAC 2 cut(s) 127, 897
TspDTI ATGAA 4 cut(s) 87, 345, 872, 897
TspGWI ACGGA 1 cut(s) 890
TspRI CASTG 9 cut(s) 132, 274, 294, 696, 796, 855, 900, 976, 1141
VpaK11BI GGWCC 2 cut(s) 568, 890
XapI RAATTY 2 cut(s) 253, 333
XceI RCATGY 2 cut(s) 107, 383
XmiI GTMKAC 1 cut(s) 757
XmnI GAANNNNTTC 1 cut(s) 1058
XspI CTAG 1 cut(s) 1175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.