pycom16g05290

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0013194
Physical Location & Seq
Reverse (-)
3442241 .. 3442939
699 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g05290.1

Sequence Viewer

Length: 366 bp
ATGCTTGACTGGAAGGCAGTGGGGATGGATTCTGAACCCAGGTCGGATGATGAAATTGGTCCCCTCTCTCCTTTGGCTGTTAGTATTGCAGCTGGAATTTCTGGTTCTGTTGCTGCAGCTGCTTCTCATTGTTTTGACACTGCCAAATCTCGATCAGAATGTACTGTGCTGCCCAAGTATGTCTCGACGGAGAGGAAGCTCCTGAAATGGGGAAGACCAGGGAATAGGTTTGAGAGAGTTACAGGGATCCACCCTTCAGACAGGAATCTCCTGTTCCGCAGCCTTGGGTTACGGATGGCTCGCAGCGGGTTCGCATCATTCGTCATGGTCGGAAGTTATTTCTTGGCTGTGGATCTTCTTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

122

Amino Acids

13.13

Weight (kDa)

9.14

Isoelectric Point (pI)

44.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15010 AT4G15010 AT4G15010
fragaria_vesca FvH4_4g29980
malus_domestica MD13G1062400.v1.1 MD16G1060700.v1.1
prunus_persica Prupe.1G287600_v2.0.a1
pyrus_communis pycom13g05480 pycom16g05290
rosa_chinensis RchiOBHm_Chr4g0438261
rosa_laevigata RLG00000006376
rosa_roxburghii Rroxscaffold_5G00379350
rosa_rugosa Rorug04G0308300
rosa_samantha Rh4AG359500 Rh4BG370300 Rh4CG384500
rosa_wichuraiana Rw0G006410 Rw0G016350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 277, 306
AclWI GGATC 3 cut(s) 241, 254, 360
AcsI RAATTY 1 cut(s) 96
AcuI CTGAAG 1 cut(s) 240
AfaI GTAC 1 cut(s) 163
AfiI CCNNNNNNNGG 1 cut(s) 208
AjnI CCWGG 2 cut(s) 38, 217
AluBI AGCT 3 cut(s) 92, 119, 199
AluI AGCT 3 cut(s) 92, 119, 199
Alw26I GTCTC 1 cut(s) 187
AlwI GGATC 3 cut(s) 241, 254, 360
ApeKI GCWGC 7 cut(s) 89, 113, 116, 119, 169, 279, 303
ApoI RAATTY 1 cut(s) 96
AspS9I GGNCC 1 cut(s) 59
AvaII GGWCC 1 cut(s) 59
BamHI GGATCC 1 cut(s) 246
BbsI GAAGAC 1 cut(s) 220
BbvI GCAGC 7 cut(s) 100, 101, 106, 128, 156, 291, 315
BccI CCATC 2 cut(s) 19, 289
BcgI CGANNNNNNTGC 2 cut(s) 292, 326
BciT130I CCWGG 2 cut(s) 40, 219
BcoDI GTCTC 1 cut(s) 187
BfmI CTRYAG 1 cut(s) 114
BisI GCNGC 7 cut(s) 90, 114, 117, 120, 170, 280, 304
BlsI GCNGC 7 cut(s) 91, 115, 118, 121, 171, 281, 305
Bme1390I CCNGG 2 cut(s) 40, 219
Bme18I GGWCC 1 cut(s) 59
BmgT120I GGNCC 1 cut(s) 59
BmiI GGNNCC 2 cut(s) 61, 248
BmrFI CCNGG 2 cut(s) 40, 219
BmsI GCATC 1 cut(s) 323
BpiI GAAGAC 1 cut(s) 220
BsaJI CCNNGG 3 cut(s) 38, 218, 283
Bsc4I CCNNNNNNNGG 1 cut(s) 208
Bse1I ACTGG 1 cut(s) 14
BseBI CCWGG 2 cut(s) 40, 219
BseDI CCNNGG 3 cut(s) 38, 218, 283
BseGI GGATG 3 cut(s) 30, 52, 300
BseLI CCNNNNNNNGG 1 cut(s) 208
BseNI ACTGG 1 cut(s) 14
BseXI GCAGC 7 cut(s) 100, 101, 106, 128, 156, 291, 315
BslFI GGGAC 1 cut(s) 45
BslI CCNNNNNNNGG 1 cut(s) 208
BsmAI GTCTC 1 cut(s) 187
BsmFI GGGAC 1 cut(s) 45
Bsp143I GATC 3 cut(s) 152, 246, 352
BspACI CCGC 2 cut(s) 277, 306
BspLI GGNNCC 2 cut(s) 61, 248
BspMAI CTGCAG 1 cut(s) 118
BspPI GGATC 3 cut(s) 241, 254, 360
BsrI ACTGG 1 cut(s) 14
BssECI CCNNGG 3 cut(s) 38, 218, 283
BssMI GATC 3 cut(s) 152, 246, 352
BssT1I CCWWGG 1 cut(s) 283
Bst2UI CCWGG 2 cut(s) 40, 219
Bst4CI ACNGT 1 cut(s) 166
BstC8I GCNNGC 1 cut(s) 301
BstF5I GGATG 3 cut(s) 30, 52, 300
BstKTI GATC 3 cut(s) 155, 249, 355
BstMAI GTCTC 1 cut(s) 187
BstMBI GATC 3 cut(s) 152, 246, 352
BstMWI GCNNNNNNNGC 1 cut(s) 119
BstNI CCWGG 2 cut(s) 40, 219
BstSCI CCNGG 2 cut(s) 38, 217
BstSFI CTRYAG 1 cut(s) 114
BstV1I GCAGC 7 cut(s) 100, 101, 106, 128, 156, 291, 315
BstV2I GAAGAC 1 cut(s) 220
BstX2I RGATCY 2 cut(s) 246, 352
BstYI RGATCY 2 cut(s) 246, 352
BtsCI GGATG 3 cut(s) 30, 52, 300
BtsI GCAGTG 2 cut(s) 24, 138
BtsIMutI CAGTG 2 cut(s) 24, 138
Cac8I GCNNGC 1 cut(s) 301
Cfr13I GGNCC 1 cut(s) 59
Csp6I GTAC 1 cut(s) 162
CviAII CATG 1 cut(s) 325
CviJI RGCY 7 cut(s) 77, 92, 119, 199, 282, 299, 347
CviKI_1 RGCY 7 cut(s) 77, 92, 119, 199, 282, 299, 347
CviQI GTAC 1 cut(s) 162
DpnI GATC 3 cut(s) 154, 248, 354
DpnII GATC 3 cut(s) 152, 246, 352
Eco130I CCWWGG 1 cut(s) 283
Eco47I GGWCC 1 cut(s) 59
Eco57I CTGAAG 1 cut(s) 240
EcoRII CCWGG 2 cut(s) 38, 217
EcoT14I CCWWGG 1 cut(s) 283
ErhI CCWWGG 1 cut(s) 283
FaeI CATG 1 cut(s) 328
FaiI YATR 2 cut(s) 180, 326
FaqI GGGAC 1 cut(s) 45
FatI CATG 1 cut(s) 324
FauI CCCGC 1 cut(s) 299
Fnu4HI GCNGC 7 cut(s) 90, 114, 117, 120, 170, 280, 304
FokI GGATG 3 cut(s) 37, 59, 307
Fsp4HI GCNGC 7 cut(s) 90, 114, 117, 120, 170, 280, 304
GluI GCNGC 7 cut(s) 90, 114, 117, 120, 170, 280, 304
Hin1II CATG 1 cut(s) 328
HinfI GANTC 2 cut(s) 29, 265
Hpy188I TCNGA 5 cut(s) 34, 46, 157, 259, 332
Hpy188III TCNNGA 3 cut(s) 150, 184, 202
Hpy99I CGWCG 1 cut(s) 190
HpyAV CCTTC 2 cut(s) 7, 264
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4V TGCA 2 cut(s) 89, 116
HpyF10VI GCNNNNNNNGC 1 cut(s) 119
Hsp92II CATG 1 cut(s) 328
Kzo9I GATC 3 cut(s) 152, 246, 352
LmnI GCTCC 1 cut(s) 204
Lsp1109I GCAGC 7 cut(s) 100, 101, 106, 128, 156, 291, 315
LweI GCATC 1 cut(s) 323
MaeIII GTNAC 2 cut(s) 238, 288
MalI GATC 3 cut(s) 154, 248, 354
MboI GATC 3 cut(s) 152, 246, 352
MboII GAAGA 2 cut(s) 225, 347
MflI RGATCY 2 cut(s) 246, 352
MluCI AATT 2 cut(s) 54, 96
MmeI TCCRAC 2 cut(s) 24, 310
MnlI CCTC 2 cut(s) 74, 186
MspA1I CMGCKG 3 cut(s) 92, 119, 306
MspR9I CCNGG 2 cut(s) 40, 219
MvaI CCWGG 2 cut(s) 40, 219
MwoI GCNNNNNNNGC 1 cut(s) 119
NdeII GATC 3 cut(s) 152, 246, 352
NlaIII CATG 1 cut(s) 328
NlaIV GGNNCC 2 cut(s) 61, 248
PcsI WCGNNNNNNNCGW 1 cut(s) 318
PfeI GAWTC 2 cut(s) 29, 265
PkrI GCNGC 7 cut(s) 91, 115, 118, 121, 171, 281, 305
Psp6I CCWGG 2 cut(s) 38, 217
PspGI CCWGG 2 cut(s) 38, 217
PspN4I GGNNCC 2 cut(s) 61, 248
PspPI GGNCC 1 cut(s) 59
PstI CTGCAG 1 cut(s) 118
PsuI RGATCY 2 cut(s) 246, 352
PvuII CAGCTG 2 cut(s) 92, 119
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
SatI GCNGC 7 cut(s) 90, 114, 117, 120, 170, 280, 304
Sau3AI GATC 3 cut(s) 152, 246, 352
Sau96I GGNCC 1 cut(s) 59
ScrFI CCNGG 2 cut(s) 40, 219
SetI ASST 5 cut(s) 44, 94, 121, 201, 230
SfaNI GCATC 1 cut(s) 323
SfcI CTRYAG 1 cut(s) 114
SinI GGWCC 1 cut(s) 59
Sse9I AATT 2 cut(s) 54, 96
SsiI CCGC 2 cut(s) 277, 306
StyD4I CCNGG 2 cut(s) 38, 217
StyI CCWWGG 1 cut(s) 283
TaaI ACNGT 1 cut(s) 166
TaqI TCGA 2 cut(s) 151, 185
TasI AATT 2 cut(s) 54, 96
TatI WGTACW 1 cut(s) 161
TfiI GAWTC 2 cut(s) 29, 265
TscAI CASTG 2 cut(s) 24, 145
TseI GCWGC 7 cut(s) 89, 113, 116, 119, 169, 279, 303
TspDTI ATGAA 1 cut(s) 66
TspGWI ACGGA 2 cut(s) 203, 307
TspRI CASTG 2 cut(s) 24, 145
VpaK11BI GGWCC 1 cut(s) 59
XapI RAATTY 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.