Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0009683

Physical Location & Seq

Genomic Coordinates Forward (+)

30000213 .. 30003431

Gene Structure 3219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g30290.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCATTCCTTCCCTCGCGTTTTAAGAAGAAGAAAGCTCTCAAAGGAGATTTTGATCTGCTCGAGTGTTCCAAAGTCGATGTTGGGATGACAGAACAAGAGTGTAACTTACCTCCAGGCTATAGGTTTTCTCCGGTCGATGATGAATTGGTTCTGTTTTACTTGTTTAACAAAATTGTTGGTCGTAATATACCATTAACTGATGTTGTCAAAGAGATTGATCTGTATGAGCATGATCCGGATCAGCTACCCCAAGATGATTACAGACATGGTACCAAGCGCTGTGAAGCTTATTATTTCACCAATGTCGAACAAGTTTACAGTAGGGAAGGGAAGGTCACTAAGAGAACTACAAAGGGTGGTTACTGGAAAGTAACTAGTGAGGGAAAGAAAGTTACATATGGGGATGACGAAATAGTTGTTGGGTTTAAAACGTCTATGTTATTCAATAAAGGACATGTTCCAGCACCAAGAGGGACCATAAGCTCCTTTATCATGCATGAGTATAGAGTTAATCCCAGTATAGTTCCTGTTGATGTGCTTAATGACAGCATAAGGGCAAAGATTGAGAGATTTGTGGTATGCAAAATTGTAAACAAAGAGAAAGAGGCTCGTCAAGAGGGTCCTCCCGCATATAAACTTCCACCAGAACTGCCTAGCCATGAAGATGAGGAATCAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

228

Amino Acids

26.02

Weight (kDa)

6.25

Isoelectric Point (pI)

44.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	38 - 171	3.4e-29	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009683)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g30290
malus_domestica	MD13G1063900.v1.1 MD16G1062600.v1.1
prunus_persica	Prupe.1G284800_v2.0.a1 Prupe.1G284900_v2.0.a1 Prupe.1G284900_v2.0.a1 Prupe.1G284900_v2.0.a1 Prupe.1G284900_v2.0.a1 Prupe.1G284900_v2.0.a1
pyrus_communis	pycom13g05640 pycom16g05470
rosa_chinensis	RchiOBHm_Chr4g0438571
rosa_laevigata	RLG00000006350
rosa_multiflora	Rmu_sc0002327.1_g000003
rosa_roxburghii	Rroxscaffold_5G00379580
rosa_rugosa	Rorug04G0311600
rosa_samantha	Rh4AG362000 Rh4BG373400 Rh4CG387300 Rh4DG368100
rosa_wichuraiana	Rw0G006670 Rw0G016620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	272
AccB1I	GGYRCC	1 cut(s)	272
AccII	CGCG	1 cut(s)	19
AccIII	TCCGGA	1 cut(s)	238
AciI	CCGC	1 cut(s)	630
AclWI	GGATC	2 cut(s)	230, 249
AfaI	GTAC	1 cut(s)	274
AfeI	AGCGCT	1 cut(s)	281
AflIII	ACRYGT	1 cut(s)	457
AgsI	TTSAA	1 cut(s)	448
AhlI	ACTAGT	1 cut(s)	377
AjnI	CCWGG	1 cut(s)	115
AjuI	GAANNNNNNNTTGG	2 cut(s)	405, 437
AluBI	AGCT	4 cut(s)	38, 247, 290, 486
AluI	AGCT	4 cut(s)	38, 247, 290, 486
AlwI	GGATC	2 cut(s)	230, 249
Ama87I	CYCGRG	1 cut(s)	62
Aor13HI	TCCGGA	1 cut(s)	238
Aor51HI	AGCGCT	1 cut(s)	281
Asp700I	GAANNNNTTC	1 cut(s)	150
Asp718I	GGTACC	1 cut(s)	272
AspLEI	GCGC	1 cut(s)	282
AspS9I	GGNCC	2 cut(s)	477, 623
AsuHPI	GGTGA	1 cut(s)	292
AvaI	CYCGRG	1 cut(s)	62
AvaII	GGWCC	2 cut(s)	477, 623
BanI	GGYRCC	1 cut(s)	272
BciT130I	CCWGG	1 cut(s)	117
BcuI	ACTAGT	1 cut(s)	377
BfaI	CTAG	2 cut(s)	378, 657
BfmI	CTRYAG	1 cut(s)	121
BfoI	RGCGCY	1 cut(s)	283
Bme1390I	CCNGG	1 cut(s)	117
Bme18I	GGWCC	2 cut(s)	477, 623
BmeT110I	CYCGRG	1 cut(s)	62
BmgT120I	GGNCC	2 cut(s)	477, 623
BmiI	GGNNCC	3 cut(s)	274, 478, 624
BmrFI	CCNGG	1 cut(s)	117
BmrI	ACTGGG	1 cut(s)	513
BmuI	ACTGGG	1 cut(s)	513
BpmI	CTGGAG	1 cut(s)	99
BsaBI	GATNNNNATC	2 cut(s)	54, 240
BsaWI	WCCGGW	2 cut(s)	133, 238
Bse1I	ACTGG	2 cut(s)	371, 519
Bse8I	GATNNNNATC	2 cut(s)	54, 240
BseAI	TCCGGA	1 cut(s)	238
BseBI	CCWGG	1 cut(s)	117
BseGI	GGATG	2 cut(s)	93, 412
BseJI	GATNNNNATC	2 cut(s)	54, 240
BseNI	ACTGG	2 cut(s)	371, 519
Bsh1236I	CGCG	1 cut(s)	19
Bsh1285I	CGRYCG	1 cut(s)	138
BshNI	GGYRCC	1 cut(s)	272
BsiEI	CGRYCG	1 cut(s)	138
BsiHKCI	CYCGRG	1 cut(s)	62
BsiSI	CCGG	2 cut(s)	134, 239
BslFI	GGGAC	1 cut(s)	490
BsmFI	GGGAC	1 cut(s)	490
BsmI	GAATGC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	62
Bsp13I	TCCGGA	1 cut(s)	238
Bsp143I	GATC	4 cut(s)	55, 220, 235, 241
BspACI	CCGC	1 cut(s)	630
BspEI	TCCGGA	1 cut(s)	238
BspFNI	CGCG	1 cut(s)	19
BspLI	GGNNCC	3 cut(s)	274, 478, 624
BspPI	GGATC	2 cut(s)	230, 249
BspT107I	GGYRCC	1 cut(s)	272
BsrI	ACTGG	2 cut(s)	371, 519
BssMI	GATC	4 cut(s)	55, 220, 235, 241
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	1 cut(s)	323
BstDEI	CTNAG	1 cut(s)	342
BstF5I	GGATG	2 cut(s)	93, 412
BstFNI	CGCG	1 cut(s)	19
BstH2I	RGCGCY	1 cut(s)	283
BstHHI	GCGC	1 cut(s)	282
BstKTI	GATC	4 cut(s)	58, 223, 238, 244
BstMBI	GATC	4 cut(s)	55, 220, 235, 241
BstMCI	CGRYCG	1 cut(s)	138
BstNI	CCWGG	1 cut(s)	117
BstNSI	RCATGY	1 cut(s)	461
BstSCI	CCNGG	1 cut(s)	115
BstSFI	CTRYAG	1 cut(s)	121
BstUI	CGCG	1 cut(s)	19
BtsCI	GGATG	2 cut(s)	93, 412
CfoI	GCGC	1 cut(s)	282
Cfr13I	GGNCC	2 cut(s)	477, 623
Csp6I	GTAC	1 cut(s)	273
CviAII	CATG	6 cut(s)	233, 269, 458, 496, 500, 662
CviJI	RGCY	7 cut(s)	38, 120, 247, 290, 486, 611, 660
CviKI_1	RGCY	7 cut(s)	38, 120, 247, 290, 486, 611, 660
CviQI	GTAC	1 cut(s)	273
DdeI	CTNAG	1 cut(s)	342
DpnI	GATC	4 cut(s)	57, 222, 237, 243
DpnII	GATC	4 cut(s)	55, 220, 235, 241
DraI	TTTAAA	1 cut(s)	430
Eco47I	GGWCC	2 cut(s)	477, 623
Eco47III	AGCGCT	1 cut(s)	281
Eco88I	CYCGRG	1 cut(s)	62
EcoO109I	RGGNCCY	1 cut(s)	623
EcoRII	CCWGG	1 cut(s)	115
EcoT22I	ATGCAT	1 cut(s)	501
FaeI	CATG	6 cut(s)	236, 272, 461, 499, 503, 665
FaqI	GGGAC	1 cut(s)	490
FatI	CATG	6 cut(s)	232, 268, 457, 495, 499, 661
FauI	CCCGC	1 cut(s)	637
FauNDI	CATATG	1 cut(s)	400
FokI	GGATG	2 cut(s)	100, 419
FspBI	CTAG	2 cut(s)	378, 657
GlaI	GCGC	1 cut(s)	281
GsuI	CTGGAG	1 cut(s)	99
HaeII	RGCGCY	1 cut(s)	283
HapII	CCGG	2 cut(s)	134, 239
HhaI	GCGC	1 cut(s)	282
Hin1II	CATG	6 cut(s)	236, 272, 461, 499, 503, 665
Hin6I	GCGC	1 cut(s)	280
HinP1I	GCGC	1 cut(s)	280
HindIII	AAGCTT	1 cut(s)	288
HinfI	GANTC	1 cut(s)	674
HpaII	CCGG	2 cut(s)	134, 239
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	2 cut(s)	319, 595
Hpy188III	TCNNGA	2 cut(s)	239, 617
Hpy8I	GTNNAC	2 cut(s)	319, 595
HpyAV	CCTTC	3 cut(s)	20, 323, 328
HpyCH4III	ACNGT	1 cut(s)	323
HpyCH4IV	ACGT	1 cut(s)	434
HpyCH4V	TGCA	2 cut(s)	499, 585
HpyF3I	CTNAG	1 cut(s)	342
HpySE526I	ACGT	1 cut(s)	434
Hsp92II	CATG	6 cut(s)	236, 272, 461, 499, 503, 665
HspAI	GCGC	1 cut(s)	280
Kpn2I	TCCGGA	1 cut(s)	238
KpnI	GGTACC	1 cut(s)	276
Kzo9I	GATC	4 cut(s)	55, 220, 235, 241
LmnI	GCTCC	1 cut(s)	491
LpnPI	CCDG	9 cut(s)	102, 129, 147, 252, 352, 477, 532, 543, 660
MaeI	CTAG	2 cut(s)	378, 657
MaeII	ACGT	1 cut(s)	434
MaeIII	GTNAC	5 cut(s)	104, 337, 362, 373, 394
MalI	GATC	4 cut(s)	57, 222, 237, 243
MboI	GATC	4 cut(s)	55, 220, 235, 241
MboII	GAAGA	3 cut(s)	40, 43, 677
MluCI	AATT	3 cut(s)	146, 174, 588
MnlI	CCTC	8 cut(s)	25, 123, 376, 467, 601, 613, 636, 664
Mph1103I	ATGCAT	1 cut(s)	501
MroI	TCCGGA	1 cut(s)	238
MroXI	GAANNNNTTC	1 cut(s)	150
MseI	TTAA	6 cut(s)	24, 168, 197, 429, 513, 543
MslI	CAYNNNNRTG	1 cut(s)	666
MspI	CCGG	2 cut(s)	134, 239
MspR9I	CCNGG	1 cut(s)	117
Mva1269I	GAATGC	1 cut(s)	5
MvaI	CCWGG	1 cut(s)	117
MvnI	CGCG	1 cut(s)	19
NdeI	CATATG	1 cut(s)	400
NdeII	GATC	4 cut(s)	55, 220, 235, 241
NlaIII	CATG	6 cut(s)	236, 272, 461, 499, 503, 665
NlaIV	GGNNCC	3 cut(s)	274, 478, 624
NmuCI	GTSAC	1 cut(s)	337
NsiI	ATGCAT	1 cut(s)	501
NspI	RCATGY	1 cut(s)	461
PaeR7I	CTCGAG	1 cut(s)	62
PciI	ACATGT	1 cut(s)	457
PctI	GAATGC	1 cut(s)	5
PdmI	GAANNNNTTC	1 cut(s)	150
PfeI	GAWTC	1 cut(s)	674
PpuMI	RGGWCCY	1 cut(s)	623
PscI	ACATGT	1 cut(s)	457
Psp5II	RGGWCCY	1 cut(s)	623
Psp6I	CCWGG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	115
PspN4I	GGNNCC	3 cut(s)	274, 478, 624
PspPI	GGNCC	2 cut(s)	477, 623
PspPPI	RGGWCCY	1 cut(s)	623
PspXI	VCTCGAGB	1 cut(s)	62
RsaI	GTAC	1 cut(s)	274
RsaNI	GTAC	1 cut(s)	273
RseI	CAYNNNNRTG	1 cut(s)	666
SaqAI	TTAA	6 cut(s)	24, 168, 197, 429, 513, 543
Sau3AI	GATC	4 cut(s)	55, 220, 235, 241
Sau96I	GGNCC	2 cut(s)	477, 623
ScrFI	CCNGG	1 cut(s)	117
SetI	ASST	8 cut(s)	40, 115, 128, 249, 292, 339, 437, 488
SfcI	CTRYAG	1 cut(s)	121
Sfr274I	CTCGAG	1 cut(s)	62
SinI	GGWCC	2 cut(s)	477, 623
SlaI	CTCGAG	1 cut(s)	62
SmiMI	CAYNNNNRTG	1 cut(s)	666
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
SpeI	ACTAGT	1 cut(s)	377
Sse9I	AATT	3 cut(s)	146, 174, 588
SsiI	CCGC	1 cut(s)	630
SspMI	CTAG	2 cut(s)	378, 657
StyD4I	CCNGG	1 cut(s)	115
TaaI	ACNGT	1 cut(s)	323
TaiI	ACGT	1 cut(s)	437
TaqI	TCGA	4 cut(s)	63, 78, 138, 309
TasI	AATT	3 cut(s)	146, 174, 588
TfiI	GAWTC	1 cut(s)	674
Tru1I	TTAA	6 cut(s)	24, 168, 197, 429, 513, 543
Tru9I	TTAA	6 cut(s)	24, 168, 197, 429, 513, 543
TseFI	GTSAC	1 cut(s)	337
Tsp45I	GTSAC	1 cut(s)	337
TspDTI	ATGAA	2 cut(s)	159, 678
VpaK11BI	GGWCC	2 cut(s)	477, 623
XceI	RCATGY	1 cut(s)	461
XhoI	CTCGAG	1 cut(s)	62
XmnI	GAANNNNTTC	1 cut(s)	150
XspI	CTAG	2 cut(s)	378, 657
Zsp2I	ATGCAT	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.