Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0009683

Physical Location & Seq

Genomic Coordinates Forward (+)

3714585 .. 3715479

Gene Structure 895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g05640.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGCATCCTCAGCTTCCTCGCAGTCCGCTGACAAGTACGAGGGGTTTGATCTGTTGAAGTGTTCGACCGTCCAAGAGGGGAAGAAGGAAGCGGATGTCAGGTTACCGTTAGGGTATCGATTTAATCCCACCGAAGATGAGATCGTTGTGTACTTTCTGTTTAACAAGATTATGGACCGCGCAATGCCTACCTACGGTCTTATAAAAGAGGTTGATGTGTACGAGTATGATCCCCATCAGCTGCCGAATGGTGACTTCAAACACAATGCTGGTTGCAATGCGGCCTATTACTTCGCCAACAGAGAACCCTTTGACGCTAGTGAAGGGAAGATAATTAAGACGGCTGCAAACGGTGGTTACTGGAAGGTGATCGATGACGAATATGAGGTTTTGTTCAAGGATAGTGAAGTAATCGTAGGGTTTGAAGCCGTCATGAACTTCTACGAGGGGAAGGCACCAAACGGGACCAAAACTCCCTTTGTCATGAACGAATACAGGCTCAATCCTCGTGTAGTACCTGCTCATGTGCTGAATGACAGCATTAGGAATAAGATTGAGAGGTACGTGGTATGCCGAATTATAAACGAGGAGGTTTCGAATCAGCCCGTTATCGACTATAGAAAGGAATCTCTCGAGCTTCTTTTGAAATATGCGTCTGCCGGCACTGTTAAAGACGTAGAACCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

230

Amino Acids

26.07

Weight (kDa)

5.08

Isoelectric Point (pI)

26.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009683)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g30290
malus_domestica	MD13G1063900.v1.1 MD16G1062600.v1.1
prunus_persica	Prupe.1G284800_v2.0.a1 Prupe.1G284900_v2.0.a1 Prupe.1G284900_v2.0.a1 Prupe.1G284900_v2.0.a1 Prupe.1G284900_v2.0.a1 Prupe.1G284900_v2.0.a1
pyrus_communis	pycom13g05640 pycom16g05470
rosa_chinensis	RchiOBHm_Chr4g0438571
rosa_laevigata	RLG00000006350
rosa_multiflora	Rmu_sc0002327.1_g000003
rosa_roxburghii	Rroxscaffold_5G00379580
rosa_rugosa	Rorug04G0311600
rosa_samantha	Rh4AG362000 Rh4BG373400 Rh4CG387300 Rh4DG368100
rosa_wichuraiana	Rw0G006670 Rw0G016620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	203, 581
Acc36I	ACCTGC	1 cut(s)	526
AccB1I	GGYRCC	1 cut(s)	454
AccII	CGCG	1 cut(s)	180
AciI	CCGC	4 cut(s)	27, 92, 178, 281
AclWI	GGATC	1 cut(s)	224
AfaI	GTAC	5 cut(s)	38, 152, 221, 516, 563
AfiI	CCNNNNNNNGG	1 cut(s)	194
AgsI	TTSAA	5 cut(s)	58, 259, 397, 425, 646
AluBI	AGCT	3 cut(s)	14, 241, 637
AluI	AGCT	3 cut(s)	14, 241, 637
AlwI	GGATC	1 cut(s)	224
Ama87I	CYCGRG	1 cut(s)	632
AoxI	GGCC	1 cut(s)	282
ApeKI	GCWGC	2 cut(s)	241, 344
AspLEI	GCGC	1 cut(s)	182
AspS9I	GGNCC	2 cut(s)	175, 465
AsuHPI	GGTGA	2 cut(s)	263, 379
AsuII	TTCGAA	1 cut(s)	596
AvaI	CYCGRG	1 cut(s)	632
AvaII	GGWCC	2 cut(s)	175, 465
BanI	GGYRCC	1 cut(s)	454
BauI	CACGAG	1 cut(s)	507
BbvCI	CCTCAGC	1 cut(s)	10
BbvI	GCAGC	2 cut(s)	228, 331
BccI	CCATC	1 cut(s)	243
BceAI	ACGGC	2 cut(s)	357, 413
BfaI	CTAG	1 cut(s)	318
BfmI	CTRYAG	1 cut(s)	616
BfuAI	ACCTGC	1 cut(s)	526
BisI	GCNGC	3 cut(s)	242, 282, 345
BlsI	GCNGC	3 cut(s)	243, 283, 346
Bme18I	GGWCC	2 cut(s)	175, 465
BmeT110I	CYCGRG	1 cut(s)	632
BmgT120I	GGNCC	2 cut(s)	175, 465
BmiI	GGNNCC	2 cut(s)	456, 466
BmsI	GCATC	1 cut(s)	14
Bpu10I	CCTNAGC	1 cut(s)	10
Bpu14I	TTCGAA	1 cut(s)	596
Bsa29I	ATCGAT	2 cut(s)	118, 372
BsaAI	YACGTR	1 cut(s)	565
BsaBI	GATNNNNATC	1 cut(s)	234
BsaXI	ACNNNNNCTCC	2 cut(s)	457, 487
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse118I	RCCGGY	1 cut(s)	659
Bse1I	ACTGG	1 cut(s)	365
Bse3DI	GCAATG	2 cut(s)	189, 283
Bse8I	GATNNNNATC	1 cut(s)	234
BseCI	ATCGAT	2 cut(s)	118, 372
BseGI	GGATG	2 cut(s)	5, 100
BseJI	GATNNNNATC	1 cut(s)	234
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMI	GCAATG	2 cut(s)	189, 283
BseMII	CTCAG	1 cut(s)	24
BseNI	ACTGG	1 cut(s)	365
BseRI	GAGGAG	1 cut(s)	602
BseXI	GCAGC	2 cut(s)	228, 331
Bsh1236I	CGCG	1 cut(s)	180
Bsh1285I	CGRYCG	1 cut(s)	69
BshFI	GGCC	1 cut(s)	284
BshNI	GGYRCC	1 cut(s)	454
BshVI	ATCGAT	2 cut(s)	118, 372
BsiEI	CGRYCG	1 cut(s)	69
BsiHKCI	CYCGRG	1 cut(s)	632
BsiSI	CCGG	1 cut(s)	660
BslFI	GGGAC	1 cut(s)	478
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmFI	GGGAC	1 cut(s)	478
BsnI	GGCC	1 cut(s)	284
BsoBI	CYCGRG	1 cut(s)	632
Bsp119I	TTCGAA	1 cut(s)	596
Bsp143I	GATC	4 cut(s)	49, 141, 229, 369
BspACI	CCGC	4 cut(s)	27, 92, 178, 281
BspANI	GGCC	1 cut(s)	284
BspCNI	CTCAG	1 cut(s)	23
BspDI	ATCGAT	2 cut(s)	118, 372
BspFNI	CGCG	1 cut(s)	180
BspHI	TCATGA	2 cut(s)	432, 483
BspLI	GGNNCC	2 cut(s)	456, 466
BspMI	ACCTGC	1 cut(s)	526
BspPI	GGATC	1 cut(s)	224
BspT104I	TTCGAA	1 cut(s)	596
BspT107I	GGYRCC	1 cut(s)	454
BsrDI	GCAATG	2 cut(s)	189, 283
BsrFI	RCCGGY	1 cut(s)	659
BsrI	ACTGG	1 cut(s)	365
BssAI	RCCGGY	1 cut(s)	659
BssMI	GATC	4 cut(s)	49, 141, 229, 369
BssSI	CACGAG	1 cut(s)	507
Bst2BI	CACGAG	1 cut(s)	507
Bst4CI	ACNGT	5 cut(s)	70, 108, 197, 353, 667
BstBAI	YACGTR	1 cut(s)	565
BstBI	TTCGAA	1 cut(s)	596
BstC8I	GCNNGC	1 cut(s)	661
BstDEI	CTNAG	1 cut(s)	10
BstEII	GGTNACC	1 cut(s)	102
BstF5I	GGATG	2 cut(s)	5, 100
BstFNI	CGCG	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	182
BstKTI	GATC	4 cut(s)	52, 144, 232, 372
BstMBI	GATC	4 cut(s)	49, 141, 229, 369
BstMCI	CGRYCG	1 cut(s)	69
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstPI	GGTNACC	1 cut(s)	102
BstSFI	CTRYAG	1 cut(s)	616
BstUI	CGCG	1 cut(s)	180
BstV1I	GCAGC	2 cut(s)	228, 331
Bsu15I	ATCGAT	2 cut(s)	118, 372
BsuRI	GGCC	1 cut(s)	284
BsuTUI	ATCGAT	2 cut(s)	118, 372
BtsCI	GGATG	2 cut(s)	5, 100
BtsIMutI	CAGTG	1 cut(s)	663
BveI	ACCTGC	1 cut(s)	526
Cac8I	GCNNGC	1 cut(s)	661
CciI	TCATGA	2 cut(s)	432, 483
CfoI	GCGC	1 cut(s)	182
Cfr10I	RCCGGY	1 cut(s)	659
Cfr13I	GGNCC	2 cut(s)	175, 465
ClaI	ATCGAT	2 cut(s)	118, 372
CseI	GACGC	2 cut(s)	323, 642
Csp6I	GTAC	5 cut(s)	37, 151, 220, 515, 562
CviAII	CATG	3 cut(s)	433, 484, 524
CviJI	RGCY	8 cut(s)	14, 241, 284, 344, 428, 499, 604, 637
CviKI_1	RGCY	8 cut(s)	14, 241, 284, 344, 428, 499, 604, 637
CviQI	GTAC	5 cut(s)	37, 151, 220, 515, 562
DdeI	CTNAG	1 cut(s)	10
DpnI	GATC	4 cut(s)	51, 143, 231, 371
DpnII	GATC	4 cut(s)	49, 141, 229, 369
Eco47I	GGWCC	2 cut(s)	175, 465
Eco88I	CYCGRG	1 cut(s)	632
Eco91I	GGTNACC	1 cut(s)	102
EcoO65I	GGTNACC	1 cut(s)	102
FaeI	CATG	3 cut(s)	436, 487, 527
FaqI	GGGAC	1 cut(s)	478
FatI	CATG	3 cut(s)	432, 483, 523
Fnu4HI	GCNGC	3 cut(s)	242, 282, 345
FokI	GGATG	1 cut(s)	107
Fsp4HI	GCNGC	3 cut(s)	242, 282, 345
FspBI	CTAG	1 cut(s)	318
GlaI	GCGC	1 cut(s)	181
GluI	GCNGC	3 cut(s)	242, 282, 345
HaeIII	GGCC	1 cut(s)	284
HapII	CCGG	1 cut(s)	660
HgaI	GACGC	2 cut(s)	323, 642
HhaI	GCGC	1 cut(s)	182
Hin1II	CATG	3 cut(s)	436, 487, 527
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HinfI	GANTC	2 cut(s)	598, 626
HpaII	CCGG	1 cut(s)	660
HphI	GGTGA	2 cut(s)	263, 379
Hpy166II	GTNNAC	2 cut(s)	151, 220
Hpy188III	TCNNGA	3 cut(s)	433, 484, 632
Hpy8I	GTNNAC	2 cut(s)	151, 220
HpyAV	CCTTC	4 cut(s)	79, 317, 358, 445
HpyCH4III	ACNGT	5 cut(s)	70, 108, 197, 353, 667
HpyCH4IV	ACGT	2 cut(s)	564, 675
HpyCH4V	TGCA	2 cut(s)	276, 347
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	10
HpySE526I	ACGT	2 cut(s)	564, 675
Hsp92II	CATG	3 cut(s)	436, 487, 527
HspAI	GCGC	1 cut(s)	180
KroI	GCCGGC	1 cut(s)	659
KroNI	GCCGGC	1 cut(s)	661
Kzo9I	GATC	4 cut(s)	49, 141, 229, 369
LpnPI	CCDG	6 cut(s)	85, 255, 346, 481, 531, 673
Lsp1109I	GCAGC	2 cut(s)	228, 331
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	1 cut(s)	318
MaeII	ACGT	2 cut(s)	564, 675
MaeIII	GTNAC	3 cut(s)	102, 251, 356
MalI	GATC	4 cut(s)	51, 143, 231, 371
MboI	GATC	4 cut(s)	49, 141, 229, 369
MboII	GAAGA	3 cut(s)	94, 146, 340
MluCI	AATT	2 cut(s)	333, 576
MroNI	GCCGGC	1 cut(s)	659
MseI	TTAA	4 cut(s)	123, 162, 336, 669
MspA1I	CMGCKG	2 cut(s)	29, 241
MspI	CCGG	1 cut(s)	660
MvnI	CGCG	1 cut(s)	180
MwoI	GCNNNNNNNGC	1 cut(s)	11
NaeI	GCCGGC	1 cut(s)	661
NdeII	GATC	4 cut(s)	49, 141, 229, 369
NgoMIV	GCCGGC	1 cut(s)	659
NlaIII	CATG	3 cut(s)	436, 487, 527
NlaIV	GGNNCC	2 cut(s)	456, 466
NmuCI	GTSAC	1 cut(s)	251
NspV	TTCGAA	1 cut(s)	596
PaeR7I	CTCGAG	1 cut(s)	632
PagI	TCATGA	2 cut(s)	432, 483
PdiI	GCCGGC	1 cut(s)	661
PfeI	GAWTC	2 cut(s)	598, 626
PkrI	GCNGC	3 cut(s)	243, 283, 346
Ppu21I	YACGTR	1 cut(s)	565
PsiI	TTATAA	2 cut(s)	203, 581
PspEI	GGTNACC	1 cut(s)	102
PspN4I	GGNNCC	2 cut(s)	456, 466
PspPI	GGNCC	2 cut(s)	175, 465
PvuII	CAGCTG	1 cut(s)	241
RsaI	GTAC	5 cut(s)	38, 152, 221, 516, 563
RsaNI	GTAC	5 cut(s)	37, 151, 220, 515, 562
SaqAI	TTAA	4 cut(s)	123, 162, 336, 669
SatI	GCNGC	3 cut(s)	242, 282, 345
Sau3AI	GATC	4 cut(s)	49, 141, 229, 369
Sau96I	GGNCC	2 cut(s)	175, 465
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	1 cut(s)	616
Sfr274I	CTCGAG	1 cut(s)	632
SfuI	TTCGAA	1 cut(s)	596
SinI	GGWCC	2 cut(s)	175, 465
SlaI	CTCGAG	1 cut(s)	632
SmlI	CTYRAG	1 cut(s)	632
SmoI	CTYRAG	1 cut(s)	632
Sse9I	AATT	2 cut(s)	333, 576
SsiI	CCGC	4 cut(s)	27, 92, 178, 281
SspMI	CTAG	1 cut(s)	318
TaaI	ACNGT	5 cut(s)	70, 108, 197, 353, 667
TaiI	ACGT	2 cut(s)	567, 678
TaqI	TCGA	6 cut(s)	65, 118, 372, 596, 612, 633
TasI	AATT	2 cut(s)	333, 576
TatI	WGTACW	1 cut(s)	150
TauI	GCSGC	1 cut(s)	284
TfiI	GAWTC	2 cut(s)	598, 626
Tru1I	TTAA	4 cut(s)	123, 162, 336, 669
Tru9I	TTAA	4 cut(s)	123, 162, 336, 669
TscAI	CASTG	1 cut(s)	670
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	2 cut(s)	241, 344
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	2 cut(s)	449, 500
TspRI	CASTG	1 cut(s)	670
VpaK11BI	GGWCC	2 cut(s)	175, 465
XhoI	CTCGAG	1 cut(s)	632
XspI	CTAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.