Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009683

Physical Location & Seq

Genomic Coordinates Reverse (-)

28616906 .. 28619692

Gene Structure 2787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G284900.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCATCATTTCGCCTTCTCTCTTGGTTTTTGGAGCCGACCCAAACCCAATCTCGCTTTATAGAACAAAGCTTCTCCCACAGCTCACCAACTCAAACCCAAACCAAAGCTCAGGTTATCATTGTCCTTCTCTTCATGGCATTACCTTGCCCACAATCGACTTCTCAAGTTCCTGAAACTGAAAAAGATTTTGATCTGTTGAAGTGTTCGAAGATCGAAAATGGGAAGAAAGAAGCAGAGATCCATTTAGTAGGGTATCGGTTTGATCCGTCCGAAGATCAGATTGTTGTGTTCTATCTGTTCAACAAGATTTTGGGCCGGGAACTTCCTATCAACGACATTATAAAAGAGATTTCTGTTTATGAACATGATCCGGATGAGCTCCCCAGTGGTGATTTTAAACATGGTGTTGACTGCAATGAGGCCTTTTACTTCGCATATACAGAACAGGTTTACAGCAGTAGAGGGAAAATAACTAGAAGGACGACAAAGAGTGGTTACTGGGACTTAGATGGCGAGGAAGAAGAGGTTAAATACCGCAATGGCGACATAACCGTCATGTTCGAAAAAGTTATGGTCTTCCACAAGGGAACTGCGCCAAATGGAATCGAAACTGACTTTATCATGCATGAGTACAGGGTTAATCCTCTTATAGTCCCTACTCATGTCCTCAATGATAGCATAAGGGCAAAGATTGAGAGGTATGTGGTGTGCAGAATTATACAAGAAGGAGTTTCAAATTTTCCACTTACAAACTTCCACCAGGATGGACTGCTAGGCCTGTTGAAGAAGCAGAACCAAATTGATATGACAGAAATAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

275

Amino Acids

31.6

Weight (kDa)

5.25

Isoelectric Point (pI)

41.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009683)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g30290
malus_domestica	MD13G1063900.v1.1 MD16G1062600.v1.1
prunus_persica	Prupe.1G284800_v2.0.a1 Prupe.1G284900_v2.0.a1 Prupe.1G284900_v2.0.a1 Prupe.1G284900_v2.0.a1 Prupe.1G284900_v2.0.a1 Prupe.1G284900_v2.0.a1
pyrus_communis	pycom13g05640 pycom16g05470
rosa_chinensis	RchiOBHm_Chr4g0438571
rosa_laevigata	RLG00000006350
rosa_multiflora	Rmu_sc0002327.1_g000003
rosa_roxburghii	Rroxscaffold_5G00379580
rosa_rugosa	Rorug04G0311600
rosa_samantha	Rh4AG362000 Rh4BG373400 Rh4CG387300 Rh4DG368100
rosa_wichuraiana	Rw0G006670 Rw0G016620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	344
AasI	GACNNNNNNGTC	1 cut(s)	554
AccIII	TCCGGA	1 cut(s)	373
AciI	CCGC	1 cut(s)	538
AclWI	GGATC	3 cut(s)	235, 260, 365
AcsI	RAATTY	1 cut(s)	739
AfaI	GTAC	1 cut(s)	635
AgsI	TTSAA	4 cut(s)	202, 304, 738, 787
AjnI	CCWGG	1 cut(s)	762
AluBI	AGCT	4 cut(s)	72, 84, 110, 382
AluI	AGCT	4 cut(s)	72, 84, 110, 382
Alw21I	GWGCWC	1 cut(s)	384
AlwI	GGATC	3 cut(s)	235, 260, 365
Aor13HI	TCCGGA	1 cut(s)	373
AoxI	GGCC	3 cut(s)	316, 423, 778
ApoI	RAATTY	1 cut(s)	739
AspLEI	GCGC	1 cut(s)	598
AspS9I	GGNCC	1 cut(s)	316
AsuC2I	CCSGG	1 cut(s)	320
AsuHPI	GGTGA	2 cut(s)	78, 404
AsuII	TTCGAA	2 cut(s)	209, 564
BanII	GRGCYC	1 cut(s)	384
BbsI	GAAGAC	1 cut(s)	571
Bbv12I	GWGCWC	1 cut(s)	384
BccI	CCATC	2 cut(s)	506, 761
BciT130I	CCWGG	1 cut(s)	764
BcnI	CCSGG	1 cut(s)	320
BfaI	CTAG	3 cut(s)	477, 776, 823
Bme1390I	CCNGG	2 cut(s)	320, 764
BmgT120I	GGNCC	1 cut(s)	316
BmiI	GGNNCC	1 cut(s)	36
BmrFI	CCNGG	2 cut(s)	320, 764
BmrI	ACTGGG	2 cut(s)	381, 511
BmsI	GCATC	1 cut(s)	14
BmuI	ACTGGG	2 cut(s)	381, 511
BpiI	GAAGAC	1 cut(s)	571
Bpu10I	CCTNAGC	1 cut(s)	111
Bpu14I	TTCGAA	2 cut(s)	209, 564
BpuEI	CTTGAG	1 cut(s)	150
BpuMI	CCSGG	1 cut(s)	320
BsaBI	GATNNNNATC	1 cut(s)	192
BsaWI	WCCGGW	1 cut(s)	373
Bse1I	ACTGG	2 cut(s)	387, 506
Bse3DI	GCAATG	2 cut(s)	424, 547
Bse8I	GATNNNNATC	1 cut(s)	192
BseAI	TCCGGA	1 cut(s)	373
BseBI	CCWGG	1 cut(s)	764
BseGI	GGATG	2 cut(s)	382, 772
BseJI	GATNNNNATC	1 cut(s)	192
BseMI	GCAATG	2 cut(s)	424, 547
BseMII	CTCAG	1 cut(s)	125
BseNI	ACTGG	2 cut(s)	387, 506
BsgI	GTGCAG	1 cut(s)	733
BshFI	GGCC	3 cut(s)	318, 425, 780
BsiHKAI	GWGCWC	1 cut(s)	384
BsiSI	CCGG	2 cut(s)	319, 374
BslFI	GGGAC	2 cut(s)	518, 641
BsmFI	GGGAC	2 cut(s)	518, 641
BsnI	GGCC	3 cut(s)	318, 425, 780
Bsp119I	TTCGAA	2 cut(s)	209, 564
Bsp1286I	GDGCHC	1 cut(s)	384
Bsp13I	TCCGGA	1 cut(s)	373
Bsp143I	GATC	6 cut(s)	193, 213, 240, 265, 277, 370
BspACI	CCGC	1 cut(s)	538
BspANI	GGCC	3 cut(s)	318, 425, 780
BspCNI	CTCAG	1 cut(s)	124
BspEI	TCCGGA	1 cut(s)	373
BspLI	GGNNCC	1 cut(s)	36
BspPI	GGATC	3 cut(s)	235, 260, 365
BspT104I	TTCGAA	2 cut(s)	209, 564
BsrDI	GCAATG	2 cut(s)	424, 547
BsrI	ACTGG	2 cut(s)	387, 506
BssMI	GATC	6 cut(s)	193, 213, 240, 265, 277, 370
Bst2UI	CCWGG	1 cut(s)	764
Bst4CI	ACNGT	1 cut(s)	556
Bst6I	CTCTTC	2 cut(s)	137, 519
BstBI	TTCGAA	2 cut(s)	209, 564
BstDEI	CTNAG	2 cut(s)	111, 508
BstF5I	GGATG	2 cut(s)	382, 772
BstHHI	GCGC	1 cut(s)	598
BstKTI	GATC	6 cut(s)	196, 216, 243, 268, 280, 373
BstMBI	GATC	6 cut(s)	193, 213, 240, 265, 277, 370
BstNI	CCWGG	1 cut(s)	764
BstSCI	CCNGG	2 cut(s)	318, 762
BstV2I	GAAGAC	1 cut(s)	571
BstX2I	RGATCY	1 cut(s)	240
BstXI	CCANNNNNNTGG	1 cut(s)	767
BstYI	RGATCY	1 cut(s)	240
BsuRI	GGCC	3 cut(s)	318, 425, 780
BtsCI	GGATG	2 cut(s)	382, 772
BtsIMutI	CAGTG	1 cut(s)	394
CfoI	GCGC	1 cut(s)	598
Cfr13I	GGNCC	1 cut(s)	316
Csp6I	GTAC	1 cut(s)	634
CviAII	CATG	7 cut(s)	136, 368, 404, 559, 625, 629, 665
CviJI	RGCY	9 cut(s)	37, 72, 84, 110, 318, 382, 425, 780, 821
CviKI_1	RGCY	9 cut(s)	37, 72, 84, 110, 318, 382, 425, 780, 821
CviQI	GTAC	1 cut(s)	634
DdeI	CTNAG	2 cut(s)	111, 508
DpnI	GATC	6 cut(s)	195, 215, 242, 267, 279, 372
DpnII	GATC	6 cut(s)	193, 213, 240, 265, 277, 370
DraI	TTTAAA	1 cut(s)	400
DrdI	GACNNNNNNGTC	1 cut(s)	554
DseDI	GACNNNNNNGTC	1 cut(s)	554
Eam1104I	CTCTTC	2 cut(s)	137, 519
EarI	CTCTTC	2 cut(s)	137, 519
Ecl136II	GAGCTC	1 cut(s)	382
Eco147I	AGGCCT	2 cut(s)	425, 780
Eco24I	GRGCYC	1 cut(s)	384
Eco53kI	GAGCTC	1 cut(s)	382
EcoICRI	GAGCTC	1 cut(s)	382
EcoRII	CCWGG	1 cut(s)	762
EcoT22I	ATGCAT	1 cut(s)	630
EcoT38I	GRGCYC	1 cut(s)	384
FaeI	CATG	7 cut(s)	139, 371, 407, 562, 628, 632, 668
FaqI	GGGAC	2 cut(s)	518, 641
FatI	CATG	7 cut(s)	135, 367, 403, 558, 624, 628, 664
FokI	GGATG	2 cut(s)	389, 779
FriOI	GRGCYC	1 cut(s)	384
FspBI	CTAG	3 cut(s)	477, 776, 823
GlaI	GCGC	1 cut(s)	597
HaeIII	GGCC	3 cut(s)	318, 425, 780
HapII	CCGG	2 cut(s)	319, 374
HhaI	GCGC	1 cut(s)	598
Hin1II	CATG	7 cut(s)	139, 371, 407, 562, 628, 632, 668
Hin6I	GCGC	1 cut(s)	596
HinP1I	GCGC	1 cut(s)	596
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HindIII	AAGCTT	1 cut(s)	70
HinfI	GANTC	1 cut(s)	606
HpaII	CCGG	2 cut(s)	319, 374
HphI	GGTGA	2 cut(s)	78, 404
Hpy166II	GTNNAC	2 cut(s)	412, 454
Hpy188I	TCNGA	2 cut(s)	274, 282
Hpy188III	TCNNGA	2 cut(s)	173, 374
Hpy8I	GTNNAC	2 cut(s)	412, 454
HpyAV	CCTTC	4 cut(s)	26, 137, 474, 722
HpyCH4III	ACNGT	1 cut(s)	556
HpyCH4V	TGCA	3 cut(s)	417, 628, 714
HpyF3I	CTNAG	2 cut(s)	111, 508
Hsp92II	CATG	7 cut(s)	139, 371, 407, 562, 628, 632, 668
HspAI	GCGC	1 cut(s)	596
Kpn2I	TCCGGA	1 cut(s)	373
Kzo9I	GATC	6 cut(s)	193, 213, 240, 265, 277, 370
LmnI	GCTCC	2 cut(s)	34, 387
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	3 cut(s)	477, 776, 823
MaeIII	GTNAC	1 cut(s)	497
MalI	GATC	6 cut(s)	195, 215, 242, 267, 279, 372
MboI	GATC	6 cut(s)	193, 213, 240, 265, 277, 370
MboII	GAAGA	8 cut(s)	124, 223, 238, 287, 533, 536, 571, 799
MflI	RGATCY	1 cut(s)	240
MhlI	GDGCHC	1 cut(s)	384
MluCI	AATT	3 cut(s)	717, 739, 801
MnlI	CCTC	7 cut(s)	415, 458, 511, 520, 657, 680, 693
Mph1103I	ATGCAT	1 cut(s)	630
MroI	TCCGGA	1 cut(s)	373
MseI	TTAA	3 cut(s)	399, 531, 642
MslI	CAYNNNNRTG	1 cut(s)	765
MspI	CCGG	2 cut(s)	319, 374
MspR9I	CCNGG	2 cut(s)	320, 764
MvaI	CCWGG	1 cut(s)	764
NciI	CCSGG	1 cut(s)	320
NdeII	GATC	6 cut(s)	193, 213, 240, 265, 277, 370
NlaIII	CATG	7 cut(s)	139, 371, 407, 562, 628, 632, 668
NlaIV	GGNNCC	1 cut(s)	36
NsiI	ATGCAT	1 cut(s)	630
NspV	TTCGAA	2 cut(s)	209, 564
PceI	AGGCCT	2 cut(s)	425, 780
PfeI	GAWTC	1 cut(s)	606
PsiI	TTATAA	1 cut(s)	344
Psp124BI	GAGCTC	1 cut(s)	384
Psp6I	CCWGG	1 cut(s)	762
PspGI	CCWGG	1 cut(s)	762
PspN4I	GGNNCC	1 cut(s)	36
PspPI	GGNCC	1 cut(s)	316
PsuI	RGATCY	1 cut(s)	240
RsaI	GTAC	1 cut(s)	635
RsaNI	GTAC	1 cut(s)	634
RseI	CAYNNNNRTG	1 cut(s)	765
SacI	GAGCTC	1 cut(s)	384
SaqAI	TTAA	3 cut(s)	399, 531, 642
Sau3AI	GATC	6 cut(s)	193, 213, 240, 265, 277, 370
Sau96I	GGNCC	1 cut(s)	316
ScrFI	CCNGG	2 cut(s)	320, 764
SduI	GDGCHC	1 cut(s)	384
SetI	ASST	9 cut(s)	74, 86, 112, 117, 148, 384, 453, 531, 704
SfaNI	GCATC	1 cut(s)	14
SfuI	TTCGAA	2 cut(s)	209, 564
SmiMI	CAYNNNNRTG	1 cut(s)	765
SmlI	CTYRAG	1 cut(s)	165
SmoI	CTYRAG	1 cut(s)	165
Sse9I	AATT	3 cut(s)	717, 739, 801
SseBI	AGGCCT	2 cut(s)	425, 780
SsiI	CCGC	1 cut(s)	538
SspMI	CTAG	3 cut(s)	477, 776, 823
SstI	GAGCTC	1 cut(s)	384
StuI	AGGCCT	2 cut(s)	425, 780
StyD4I	CCNGG	2 cut(s)	318, 762
TaaI	ACNGT	1 cut(s)	556
TaqI	TCGA	5 cut(s)	158, 209, 216, 564, 609
TasI	AATT	3 cut(s)	717, 739, 801
TatI	WGTACW	1 cut(s)	633
TfiI	GAWTC	1 cut(s)	606
Tru1I	TTAA	3 cut(s)	399, 531, 642
Tru9I	TTAA	3 cut(s)	399, 531, 642
TscAI	CASTG	1 cut(s)	394
TspDTI	ATGAA	2 cut(s)	124, 378
TspGWI	ACGGA	1 cut(s)	258
TspRI	CASTG	1 cut(s)	394
XapI	RAATTY	1 cut(s)	739
XspI	CTAG	3 cut(s)	477, 776, 823
Zsp2I	ATGCAT	1 cut(s)	630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.