Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009683

Physical Location & Seq

Genomic Coordinates Reverse (-)

28610413 .. 28612621

Gene Structure 2209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G284800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCATTATCTTCCCCACAATCGACTTCTCAAGTTCCTGAAACTGAGAAAGATTTTGATCTGTTGAAGTGTTCGAAGATCGAAAACGGGAAGAAAGAGGCAGATGTCGATTTACCAACAGGCTATCGGTTTGATCCGTCGGAAGATGAGATTGTTGTGTACTATCTTTTCAACAAGATTTTGGACCGGGAACTTCCTATCACCGACGTTATAAAAGAGATTTCTGTGTATGATCATGATCCGGATGAGCTCCCCAATGGCGATTTCAAACATGGTTGTGACTGCAACGAGGCCTTTTACTTCACATATACAGAACAGATTTACAGCAGTGAAGGGAAGATAACTAGAAGGACGACAAAGAGTGGTTACTGGGACCTAGATGGTGAGGAAGAAGAGGTTAAATACGGCAATGGCGACATAACCGTCGGGTTCGAAAAAGTTATGGTCTTCCACAAGGGAACTGCACCAAACGGAATCGAAACTGACTTTATCATGCATGAGTTCAGGCTTAATCCTCTTATAGTCCCTACTCATGTCCTCAATGATAGCATAAGGGCAAAGATTGAGAGGTATGTGGTGTGCAGAATTATACACGAAGGAATTTCAAATTATCAGCCCACATTCAAACTTCCACCAGGATGGACTGCTAGGCCTGTTGATGAAGGAGAACCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

226

Amino Acids

25.75

Weight (kDa)

4.68

Isoelectric Point (pI)

41.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009683)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g30290
malus_domestica	MD13G1063900.v1.1 MD16G1062600.v1.1
prunus_persica	Prupe.1G284800_v2.0.a1 Prupe.1G284900_v2.0.a1 Prupe.1G284900_v2.0.a1 Prupe.1G284900_v2.0.a1 Prupe.1G284900_v2.0.a1 Prupe.1G284900_v2.0.a1
pyrus_communis	pycom13g05640 pycom16g05470
rosa_chinensis	RchiOBHm_Chr4g0438571
rosa_laevigata	RLG00000006350
rosa_multiflora	Rmu_sc0002327.1_g000003
rosa_roxburghii	Rroxscaffold_5G00379580
rosa_rugosa	Rorug04G0311600
rosa_samantha	Rh4AG362000 Rh4BG373400 Rh4CG387300 Rh4DG368100
rosa_wichuraiana	Rw0G006670 Rw0G016620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	212
AasI	GACNNNNNNGTC	1 cut(s)	422
AccIII	TCCGGA	1 cut(s)	241
AclWI	GGATC	2 cut(s)	128, 233
AcsI	RAATTY	1 cut(s)	600
AfaI	GTAC	1 cut(s)	161
AgsI	TTSAA	5 cut(s)	67, 172, 268, 606, 625
AjnI	CCWGG	1 cut(s)	634
AjuI	GAANNNNNNNTTGG	2 cut(s)	248, 280
AluBI	AGCT	1 cut(s)	250
AluI	AGCT	1 cut(s)	250
Alw21I	GWGCWC	1 cut(s)	252
AlwI	GGATC	2 cut(s)	128, 233
Aor13HI	TCCGGA	1 cut(s)	241
AoxI	GGCC	2 cut(s)	291, 650
ApoI	RAATTY	1 cut(s)	600
AspS9I	GGNCC	2 cut(s)	184, 373
AsuC2I	CCSGG	1 cut(s)	188
AsuHPI	GGTGA	2 cut(s)	193, 395
AsuII	TTCGAA	2 cut(s)	74, 432
AvaII	GGWCC	2 cut(s)	184, 373
BanII	GRGCYC	1 cut(s)	252
BbsI	GAAGAC	1 cut(s)	439
Bbv12I	GWGCWC	1 cut(s)	252
BccI	CCATC	2 cut(s)	374, 633
BceAI	ACGGC	1 cut(s)	421
BciT130I	CCWGG	1 cut(s)	636
BclI	TGATCA	1 cut(s)	232
BcnI	CCSGG	1 cut(s)	188
BfaI	CTAG	3 cut(s)	345, 377, 648
Bme1390I	CCNGG	2 cut(s)	188, 636
Bme18I	GGWCC	2 cut(s)	184, 373
BmgT120I	GGNCC	2 cut(s)	184, 373
BmiI	GGNNCC	1 cut(s)	374
BmrFI	CCNGG	2 cut(s)	188, 636
BmrI	ACTGGG	1 cut(s)	379
BmuI	ACTGGG	1 cut(s)	379
BpiI	GAAGAC	1 cut(s)	439
Bpu14I	TTCGAA	2 cut(s)	74, 432
BpuEI	CTTGAG	1 cut(s)	15
BpuMI	CCSGG	1 cut(s)	188
BsaBI	GATNNNNATC	2 cut(s)	57, 237
BsaWI	WCCGGW	1 cut(s)	241
Bse1I	ACTGG	1 cut(s)	374
Bse3DI	GCAATG	1 cut(s)	415
Bse8I	GATNNNNATC	2 cut(s)	57, 237
BseAI	TCCGGA	1 cut(s)	241
BseBI	CCWGG	1 cut(s)	636
BseGI	GGATG	2 cut(s)	250, 644
BseJI	GATNNNNATC	2 cut(s)	57, 237
BseMI	GCAATG	1 cut(s)	415
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	1 cut(s)	374
BsgI	GTGCAG	2 cut(s)	447, 601
BshFI	GGCC	2 cut(s)	293, 652
BsiHKAI	GWGCWC	1 cut(s)	252
BsiSI	CCGG	2 cut(s)	187, 242
BslFI	GGGAC	2 cut(s)	386, 509
BsmFI	GGGAC	2 cut(s)	386, 509
BsnI	GGCC	2 cut(s)	293, 652
Bsp119I	TTCGAA	2 cut(s)	74, 432
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp13I	TCCGGA	1 cut(s)	241
Bsp143I	GATC	5 cut(s)	58, 78, 133, 232, 238
BspANI	GGCC	2 cut(s)	293, 652
BspCNI	CTCAG	1 cut(s)	37
BspEI	TCCGGA	1 cut(s)	241
BspHI	TCATGA	1 cut(s)	235
BspLI	GGNNCC	1 cut(s)	374
BspPI	GGATC	2 cut(s)	128, 233
BspT104I	TTCGAA	2 cut(s)	74, 432
BsrDI	GCAATG	1 cut(s)	415
BsrI	ACTGG	1 cut(s)	374
BssMI	GATC	5 cut(s)	58, 78, 133, 232, 238
Bst2UI	CCWGG	1 cut(s)	636
Bst4CI	ACNGT	1 cut(s)	424
Bst6I	CTCTTC	1 cut(s)	387
BstBI	TTCGAA	2 cut(s)	74, 432
BstDEI	CTNAG	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	250, 644
BstKTI	GATC	5 cut(s)	61, 81, 136, 235, 241
BstMBI	GATC	5 cut(s)	58, 78, 133, 232, 238
BstNI	CCWGG	1 cut(s)	636
BstSCI	CCNGG	2 cut(s)	186, 634
BstV2I	GAAGAC	1 cut(s)	439
BstXI	CCANNNNNNTGG	1 cut(s)	639
BsuRI	GGCC	2 cut(s)	293, 652
BtsCI	GGATG	2 cut(s)	250, 644
BtsI	GCAGTG	1 cut(s)	334
BtsIMutI	CAGTG	1 cut(s)	334
CciI	TCATGA	1 cut(s)	235
Cfr13I	GGNCC	2 cut(s)	184, 373
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	5 cut(s)	236, 272, 493, 497, 533
CviJI	RGCY	6 cut(s)	123, 250, 293, 508, 616, 652
CviKI_1	RGCY	6 cut(s)	123, 250, 293, 508, 616, 652
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	1 cut(s)	45
DpnI	GATC	5 cut(s)	60, 80, 135, 234, 240
DpnII	GATC	5 cut(s)	58, 78, 133, 232, 238
DrdI	GACNNNNNNGTC	1 cut(s)	422
DseDI	GACNNNNNNGTC	1 cut(s)	422
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
Ecl136II	GAGCTC	1 cut(s)	250
Eco147I	AGGCCT	2 cut(s)	293, 652
Eco24I	GRGCYC	1 cut(s)	252
Eco47I	GGWCC	2 cut(s)	184, 373
Eco53kI	GAGCTC	1 cut(s)	250
EcoICRI	GAGCTC	1 cut(s)	250
EcoO109I	RGGNCCY	1 cut(s)	373
EcoRII	CCWGG	1 cut(s)	634
EcoT22I	ATGCAT	1 cut(s)	498
EcoT38I	GRGCYC	1 cut(s)	252
FaeI	CATG	5 cut(s)	239, 275, 496, 500, 536
FaqI	GGGAC	2 cut(s)	386, 509
FatI	CATG	5 cut(s)	235, 271, 492, 496, 532
FbaI	TGATCA	1 cut(s)	232
FokI	GGATG	2 cut(s)	257, 651
FriOI	GRGCYC	1 cut(s)	252
FspBI	CTAG	3 cut(s)	345, 377, 648
HaeIII	GGCC	2 cut(s)	293, 652
HapII	CCGG	2 cut(s)	187, 242
Hin1II	CATG	5 cut(s)	239, 275, 496, 500, 536
HinfI	GANTC	1 cut(s)	474
HpaII	CCGG	2 cut(s)	187, 242
HphI	GGTGA	2 cut(s)	193, 395
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	3 cut(s)	38, 236, 242
Hpy8I	GTNNAC	1 cut(s)	160
Hpy99I	CGWCG	3 cut(s)	142, 209, 428
HpyAV	CCTTC	4 cut(s)	326, 342, 590, 656
HpyCH4III	ACNGT	1 cut(s)	424
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	4 cut(s)	285, 464, 496, 582
HpyF3I	CTNAG	1 cut(s)	45
HpySE526I	ACGT	1 cut(s)	207
Hsp92II	CATG	5 cut(s)	239, 275, 496, 500, 536
Kpn2I	TCCGGA	1 cut(s)	241
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	5 cut(s)	58, 78, 133, 232, 238
LmnI	GCTCC	1 cut(s)	255
LpnPI	CCDG	9 cut(s)	51, 105, 200, 255, 355, 490, 621, 648, 666
MaeI	CTAG	3 cut(s)	345, 377, 648
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	2 cut(s)	278, 365
MalI	GATC	5 cut(s)	60, 80, 135, 234, 240
MboI	GATC	5 cut(s)	58, 78, 133, 232, 238
MboII	GAAGA	8 cut(s)	3, 88, 103, 155, 349, 401, 404, 439
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	4 cut(s)	585, 600, 607, 673
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	7 cut(s)	91, 283, 379, 388, 525, 548, 561
Mph1103I	ATGCAT	1 cut(s)	498
MroI	TCCGGA	1 cut(s)	241
MseI	TTAA	2 cut(s)	399, 510
MslI	CAYNNNNRTG	2 cut(s)	276, 637
MspI	CCGG	2 cut(s)	187, 242
MspR9I	CCNGG	2 cut(s)	188, 636
MvaI	CCWGG	1 cut(s)	636
NciI	CCSGG	1 cut(s)	188
NdeII	GATC	5 cut(s)	58, 78, 133, 232, 238
NlaIII	CATG	5 cut(s)	239, 275, 496, 500, 536
NlaIV	GGNNCC	1 cut(s)	374
NmuCI	GTSAC	1 cut(s)	278
NsiI	ATGCAT	1 cut(s)	498
NspV	TTCGAA	2 cut(s)	74, 432
PagI	TCATGA	1 cut(s)	235
PceI	AGGCCT	2 cut(s)	293, 652
PcsI	WCGNNNNNNNCGW	1 cut(s)	411
PfeI	GAWTC	1 cut(s)	474
PpuMI	RGGWCCY	1 cut(s)	373
PsiI	TTATAA	1 cut(s)	212
Psp124BI	GAGCTC	1 cut(s)	252
Psp5II	RGGWCCY	1 cut(s)	373
Psp6I	CCWGG	1 cut(s)	634
PspGI	CCWGG	1 cut(s)	634
PspN4I	GGNNCC	1 cut(s)	374
PspPI	GGNCC	2 cut(s)	184, 373
PspPPI	RGGWCCY	1 cut(s)	373
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
RseI	CAYNNNNRTG	2 cut(s)	276, 637
SacI	GAGCTC	1 cut(s)	252
SaqAI	TTAA	2 cut(s)	399, 510
Sau3AI	GATC	5 cut(s)	58, 78, 133, 232, 238
Sau96I	GGNCC	2 cut(s)	184, 373
ScrFI	CCNGG	2 cut(s)	188, 636
SduI	GDGCHC	1 cut(s)	252
SetI	ASST	5 cut(s)	210, 252, 378, 399, 572
SfuI	TTCGAA	2 cut(s)	74, 432
SinI	GGWCC	2 cut(s)	184, 373
SmiMI	CAYNNNNRTG	2 cut(s)	276, 637
SmlI	CTYRAG	1 cut(s)	30
SmoI	CTYRAG	1 cut(s)	30
Sse9I	AATT	4 cut(s)	585, 600, 607, 673
SseBI	AGGCCT	2 cut(s)	293, 652
SspMI	CTAG	3 cut(s)	345, 377, 648
SstI	GAGCTC	1 cut(s)	252
StuI	AGGCCT	2 cut(s)	293, 652
StyD4I	CCNGG	2 cut(s)	186, 634
TaaI	ACNGT	1 cut(s)	424
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	6 cut(s)	23, 74, 81, 108, 432, 477
TasI	AATT	4 cut(s)	585, 600, 607, 673
TatI	WGTACW	1 cut(s)	159
TfiI	GAWTC	1 cut(s)	474
Tru1I	TTAA	2 cut(s)	399, 510
Tru9I	TTAA	2 cut(s)	399, 510
TscAI	CASTG	1 cut(s)	334
TseFI	GTSAC	1 cut(s)	278
Tsp45I	GTSAC	1 cut(s)	278
TspDTI	ATGAA	1 cut(s)	675
TspGWI	ACGGA	2 cut(s)	126, 486
TspRI	CASTG	1 cut(s)	334
VpaK11BI	GGWCC	2 cut(s)	184, 373
XapI	RAATTY	1 cut(s)	600
XspI	CTAG	3 cut(s)	345, 377, 648
Zsp2I	ATGCAT	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.