Rh4AG362000

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0009683
Physical Location & Seq
Forward (+)
67089516 .. 67090701
1186 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG362000.1

Sequence Viewer

Length: 657 bp
ATGGCATTCTCTCCCTCGGCTTCCAAGAAGAAAGGAGACTTCGATCTGTTGAAGTGTTCAAAAGTTGATGTTGGGAAGAAAGAAAAAGAGCTGAAGTTACCTACAGGCTATAGGTTTTCTCCGGACGATGATGAGTTAGTTCTGTTTTACTTGGTTAACAAAATTCTAGGTCGTACACTACCCATAACTGATGTTATCAAAGAGATCGATTTATATGAGAATGATCCGGATCAGCTGCCTCTAGATGATTACAGACATGGTACCAAGTGCAACGAAGCCTATTATTTCACCAATGTTGAACAAATTTACAGTAGCGAAGGGAAGGTCACCAAGAGAACCACAAAGGGTGGTTACTGGAAGGTAACTAGTGAGGGGAAACAGGTTATATATGGAGACGACAAAGTAGTTGTTGGGTTTAAAACCTCTATGTTATTCAATAAAGGACATGTTCCAGCACCAAAAGGGAGCATAAGTTCCTTTGTCATGCATGAGTACAGAGTTAATCCCAGCATAGTTCCTGTTGATGTGCTGAATGACAGCATAAGGGCAAAGATTGAGAGATTTGTGGTATGCAAAATTGTAAGCAAAGAGGCTCGTCCTGCATATAAACTTCCGCCAGAACTGCTTAGCCATGGAGAAGATGCAAAATCAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

218

Amino Acids

24.59

Weight (kDa)

8.55

Isoelectric Point (pI)

28.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 34 - 167 1.9e-29 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 260
AccB1I GGYRCC 1 cut(s) 260
AccIII TCCGGA 2 cut(s) 121, 226
AciI CCGC 1 cut(s) 614
AclWI GGATC 2 cut(s) 218, 237
AcsI RAATTY 2 cut(s) 162, 303
AcuI CTGAAG 1 cut(s) 113
AfaI GTAC 3 cut(s) 175, 262, 494
AflIII ACRYGT 1 cut(s) 445
AgsI TTSAA 4 cut(s) 52, 60, 299, 436
AhlI ACTAGT 1 cut(s) 365
AloI GAACNNNNNNTCC 2 cut(s) 457, 489
AluBI AGCT 2 cut(s) 91, 235
AluI AGCT 2 cut(s) 91, 235
Alw26I GTCTC 2 cut(s) 30, 387
AlwI GGATC 2 cut(s) 218, 237
Aor13HI TCCGGA 2 cut(s) 121, 226
ApeKI GCWGC 1 cut(s) 235
ApoI RAATTY 2 cut(s) 162, 303
ArsI GACNNNNNNTTYG 2 cut(s) 309, 341
Asp718I GGTACC 1 cut(s) 260
AsuHPI GGTGA 2 cut(s) 280, 319
BanI GGYRCC 1 cut(s) 260
BbvI GCAGC 1 cut(s) 222
BcoDI GTCTC 2 cut(s) 30, 387
BcuI ACTAGT 1 cut(s) 365
BfaI CTAG 3 cut(s) 167, 242, 366
BfmI CTRYAG 2 cut(s) 102, 109
BisI GCNGC 1 cut(s) 236
BlpI GCTNAGC 1 cut(s) 626
BlsI GCNGC 1 cut(s) 237
BmiI GGNNCC 1 cut(s) 262
BmsI GCATC 1 cut(s) 631
Bpu1102I GCTNAGC 1 cut(s) 626
Bsa29I ATCGAT 1 cut(s) 207
BsaBI GATNNNNATC 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 15, 631
BsaWI WCCGGW 2 cut(s) 121, 226
BsaXI ACNNNNNCTCC 2 cut(s) 457, 487
Bse1I ACTGG 1 cut(s) 359
Bse8I GATNNNNATC 1 cut(s) 228
BseAI TCCGGA 2 cut(s) 121, 226
BseCI ATCGAT 1 cut(s) 207
BseDI CCNNGG 2 cut(s) 15, 631
BseJI GATNNNNATC 1 cut(s) 228
BseNI ACTGG 1 cut(s) 359
BseXI GCAGC 1 cut(s) 222
BseYI CCCAGC 1 cut(s) 506
BshNI GGYRCC 1 cut(s) 260
BshVI ATCGAT 1 cut(s) 207
BsiSI CCGG 2 cut(s) 122, 227
BsmAI GTCTC 2 cut(s) 30, 387
BsmBI CGTCTC 1 cut(s) 387
BsmI GAATGC 1 cut(s) 5
Bsp13I TCCGGA 2 cut(s) 121, 226
Bsp143I GATC 4 cut(s) 43, 204, 223, 229
Bsp1720I GCTNAGC 1 cut(s) 626
Bsp19I CCATGG 1 cut(s) 631
BspACI CCGC 1 cut(s) 614
BspDI ATCGAT 1 cut(s) 207
BspEI TCCGGA 2 cut(s) 121, 226
BspLI GGNNCC 1 cut(s) 262
BspPI GGATC 2 cut(s) 218, 237
BspT107I GGYRCC 1 cut(s) 260
BsrI ACTGG 1 cut(s) 359
BssECI CCNNGG 2 cut(s) 15, 631
BssMI GATC 4 cut(s) 43, 204, 223, 229
BssT1I CCWWGG 1 cut(s) 631
Bst4CI ACNGT 1 cut(s) 311
BstDEI CTNAG 1 cut(s) 626
BstDSI CCRYGG 1 cut(s) 631
BstEII GGTNACC 1 cut(s) 325
BstKTI GATC 4 cut(s) 46, 207, 226, 232
BstMAI GTCTC 2 cut(s) 30, 387
BstMBI GATC 4 cut(s) 43, 204, 223, 229
BstMWI GCNNNNNNNGC 2 cut(s) 599, 622
BstNSI RCATGY 1 cut(s) 449
BstPI GGTNACC 1 cut(s) 325
BstSFI CTRYAG 2 cut(s) 102, 109
BstV1I GCAGC 1 cut(s) 222
Bsu15I ATCGAT 1 cut(s) 207
BsuTUI ATCGAT 1 cut(s) 207
BtgI CCRYGG 1 cut(s) 631
ClaI ATCGAT 1 cut(s) 207
Csp6I GTAC 3 cut(s) 174, 261, 493
CviAII CATG 5 cut(s) 257, 446, 484, 488, 632
CviJI RGCY 7 cut(s) 20, 91, 108, 235, 278, 593, 630
CviKI_1 RGCY 7 cut(s) 20, 91, 108, 235, 278, 593, 630
CviQI GTAC 3 cut(s) 174, 261, 493
DdeI CTNAG 1 cut(s) 626
DpnI GATC 4 cut(s) 45, 206, 225, 231
DpnII GATC 4 cut(s) 43, 204, 223, 229
DraI TTTAAA 1 cut(s) 418
EciI GGCGGA 1 cut(s) 603
Eco130I CCWWGG 1 cut(s) 631
Eco57I CTGAAG 1 cut(s) 113
Eco91I GGTNACC 1 cut(s) 325
EcoO65I GGTNACC 1 cut(s) 325
EcoT14I CCWWGG 1 cut(s) 631
EcoT22I ATGCAT 1 cut(s) 489
ErhI CCWWGG 1 cut(s) 631
Esp3I CGTCTC 1 cut(s) 387
FaeI CATG 5 cut(s) 260, 449, 487, 491, 635
FatI CATG 5 cut(s) 256, 445, 483, 487, 631
Fnu4HI GCNGC 1 cut(s) 236
Fsp4HI GCNGC 1 cut(s) 236
FspBI CTAG 3 cut(s) 167, 242, 366
GluI GCNGC 1 cut(s) 236
GsaI CCCAGC 1 cut(s) 510
HapII CCGG 2 cut(s) 122, 227
Hin1II CATG 5 cut(s) 260, 449, 487, 491, 635
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HpaI GTTAAC 1 cut(s) 157
HpaII CCGG 2 cut(s) 122, 227
HphI GGTGA 2 cut(s) 280, 319
Hpy166II GTNNAC 2 cut(s) 157, 176
Hpy188III TCNNGA 3 cut(s) 122, 227, 242
Hpy8I GTNNAC 2 cut(s) 157, 176
HpyAV CCTTC 3 cut(s) 311, 316, 352
HpyCH4III ACNGT 1 cut(s) 311
HpyCH4V TGCA 5 cut(s) 270, 487, 573, 602, 644
HpyF10VI GCNNNNNNNGC 2 cut(s) 599, 622
HpyF3I CTNAG 1 cut(s) 626
Hsp92II CATG 5 cut(s) 260, 449, 487, 491, 635
Kpn2I TCCGGA 2 cut(s) 121, 226
KpnI GGTACC 1 cut(s) 264
KspAI GTTAAC 1 cut(s) 157
Kzo9I GATC 4 cut(s) 43, 204, 223, 229
LmnI GCTCC 1 cut(s) 465
Lsp1109I GCAGC 1 cut(s) 222
LweI GCATC 1 cut(s) 631
MaeI CTAG 3 cut(s) 167, 242, 366
MaeIII GTNAC 4 cut(s) 96, 325, 350, 361
MalI GATC 4 cut(s) 45, 206, 225, 231
MboI GATC 4 cut(s) 43, 204, 223, 229
MboII GAAGA 3 cut(s) 40, 88, 650
MluCI AATT 4 cut(s) 162, 303, 576, 652
MnlI CCTC 5 cut(s) 25, 249, 364, 433, 583
Mph1103I ATGCAT 1 cut(s) 489
MroI TCCGGA 2 cut(s) 121, 226
MseI TTAA 3 cut(s) 156, 417, 501
MspA1I CMGCKG 1 cut(s) 235
MspI CCGG 2 cut(s) 122, 227
Mva1269I GAATGC 1 cut(s) 5
MwoI GCNNNNNNNGC 2 cut(s) 599, 622
NcoI CCATGG 1 cut(s) 631
NdeII GATC 4 cut(s) 43, 204, 223, 229
NlaIII CATG 5 cut(s) 260, 449, 487, 491, 635
NlaIV GGNNCC 1 cut(s) 262
NmuCI GTSAC 1 cut(s) 325
NsiI ATGCAT 1 cut(s) 489
NspI RCATGY 1 cut(s) 449
PciI ACATGT 1 cut(s) 445
PctI GAATGC 1 cut(s) 5
PkrI GCNGC 1 cut(s) 237
PscI ACATGT 1 cut(s) 445
PspEI GGTNACC 1 cut(s) 325
PspFI CCCAGC 1 cut(s) 506
PspN4I GGNNCC 1 cut(s) 262
PvuII CAGCTG 1 cut(s) 235
RsaI GTAC 3 cut(s) 175, 262, 494
RsaNI GTAC 3 cut(s) 174, 261, 493
SaqAI TTAA 3 cut(s) 156, 417, 501
SatI GCNGC 1 cut(s) 236
Sau3AI GATC 4 cut(s) 43, 204, 223, 229
SetI ASST 9 cut(s) 93, 103, 116, 172, 237, 327, 363, 384, 425
SfaNI GCATC 1 cut(s) 631
SfcI CTRYAG 2 cut(s) 102, 109
SpeI ACTAGT 1 cut(s) 365
Sse9I AATT 4 cut(s) 162, 303, 576, 652
SsiI CCGC 1 cut(s) 614
SspMI CTAG 3 cut(s) 167, 242, 366
StyI CCWWGG 1 cut(s) 631
TaaI ACNGT 1 cut(s) 311
TaqI TCGA 2 cut(s) 42, 207
TasI AATT 4 cut(s) 162, 303, 576, 652
TatI WGTACW 1 cut(s) 492
Tru1I TTAA 3 cut(s) 156, 417, 501
Tru9I TTAA 3 cut(s) 156, 417, 501
TseFI GTSAC 1 cut(s) 325
TseI GCWGC 1 cut(s) 235
Tsp45I GTSAC 1 cut(s) 325
XapI RAATTY 2 cut(s) 162, 303
XbaI TCTAGA 1 cut(s) 241
XceI RCATGY 1 cut(s) 449
XspI CTAG 3 cut(s) 167, 242, 366
Zsp2I ATGCAT 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.