Rroxscaffold_5G00379580

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0009683
Physical Location & Seq
Forward (+)
59885814 .. 59887324
1511 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00379580.1

Sequence Viewer

Length: 687 bp
ATGTTGAGTTGGGTTTTCATCATTGTGTTCATGGCATTCTCTCCCTCGGCTTCCAAGAAGAAAGGAGACTTCGATCTGTTGAAGTGTTCAAAAGTTGATGTTGGGAAGAAAGAAAAAGAGCTCAAGTTACCTACAGGCTATAGGTTTTCTCCGGACGATGATGAGTTAGTTCTGTTTTACTTGGTTAACAAAATTCTAGGTCGTACACTACCCATAACTGATGTTATCAAAGAGATTGATTTATATGAGAATGATCCAGATCAGCTGCCTCTAGATGATTACAGACATGGTACCAAGTGCAACGAAGCCTATTATTTCACCAATGTTGAACAAATTTACAGTAGCGAAGGGAAGGTCACCAAGAGAACCACAAAGGGTGGTTACTGGAAGGTAACTAGTGAGGGAAAACAGGTTATATATGGAGACGACAAAGTAGTTGTTGGGTTTAAAACCTCTATGTTATTCAATAAAGGACATGTTCCAGCACCAAAAGGGAGCATAAGTTCCTTTGTCATGCATGAGTACAGAGTTAATCCCAGCATAGTTCCTGTTGATGTGCTTAATGACAGCATAAGGGCAAAGATTGAGAGATTTGTGGTATGCAAAATTGTAAGCAAAGAGGCTCGTCCTGCATACAAACTTCCGCCAGAACTGCTTAGCCATGGAGAAGATGCAAAATCAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

228

Amino Acids

25.83

Weight (kDa)

8.55

Isoelectric Point (pI)

26.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 44 - 177 2.1e-29 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 290
AccB1I GGYRCC 1 cut(s) 290
AccIII TCCGGA 1 cut(s) 151
AciI CCGC 1 cut(s) 644
AclWI GGATC 1 cut(s) 248
AcsI RAATTY 2 cut(s) 192, 333
AfaI GTAC 3 cut(s) 205, 292, 524
AflIII ACRYGT 1 cut(s) 475
AgsI TTSAA 4 cut(s) 82, 90, 329, 466
AhlI ACTAGT 1 cut(s) 395
AloI GAACNNNNNNTCC 2 cut(s) 487, 519
AluBI AGCT 2 cut(s) 121, 265
AluI AGCT 2 cut(s) 121, 265
Alw21I GWGCWC 1 cut(s) 123
Alw26I GTCTC 2 cut(s) 60, 417
AlwI GGATC 1 cut(s) 248
Aor13HI TCCGGA 1 cut(s) 151
ApeKI GCWGC 1 cut(s) 265
ApoI RAATTY 2 cut(s) 192, 333
ArsI GACNNNNNNTTYG 2 cut(s) 339, 371
Asp718I GGTACC 1 cut(s) 290
AsuHPI GGTGA 2 cut(s) 310, 349
BanI GGYRCC 1 cut(s) 290
BanII GRGCYC 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 123
BbvI GCAGC 1 cut(s) 252
BcoDI GTCTC 2 cut(s) 60, 417
BcuI ACTAGT 1 cut(s) 395
BfaI CTAG 3 cut(s) 197, 272, 396
BfmI CTRYAG 2 cut(s) 132, 139
BisI GCNGC 1 cut(s) 266
BlpI GCTNAGC 1 cut(s) 656
BlsI GCNGC 1 cut(s) 267
BmiI GGNNCC 1 cut(s) 292
BmsI GCATC 1 cut(s) 661
Bpu1102I GCTNAGC 1 cut(s) 656
BpuEI CTTGAG 1 cut(s) 107
BsaBI GATNNNNATC 1 cut(s) 258
BsaJI CCNNGG 2 cut(s) 45, 661
BsaWI WCCGGW 1 cut(s) 151
BsaXI ACNNNNNCTCC 2 cut(s) 487, 517
Bse1I ACTGG 1 cut(s) 389
Bse8I GATNNNNATC 1 cut(s) 258
BseAI TCCGGA 1 cut(s) 151
BseDI CCNNGG 2 cut(s) 45, 661
BseJI GATNNNNATC 1 cut(s) 258
BseNI ACTGG 1 cut(s) 389
BseXI GCAGC 1 cut(s) 252
BseYI CCCAGC 1 cut(s) 536
BshNI GGYRCC 1 cut(s) 290
BsiHKAI GWGCWC 1 cut(s) 123
BsiSI CCGG 1 cut(s) 152
BsmAI GTCTC 2 cut(s) 60, 417
BsmBI CGTCTC 1 cut(s) 417
BsmI GAATGC 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 123
Bsp13I TCCGGA 1 cut(s) 151
Bsp143I GATC 3 cut(s) 73, 253, 259
Bsp1720I GCTNAGC 1 cut(s) 656
Bsp19I CCATGG 1 cut(s) 661
BspACI CCGC 1 cut(s) 644
BspEI TCCGGA 1 cut(s) 151
BspLI GGNNCC 1 cut(s) 292
BspPI GGATC 1 cut(s) 248
BspT107I GGYRCC 1 cut(s) 290
BsrI ACTGG 1 cut(s) 389
BssECI CCNNGG 2 cut(s) 45, 661
BssMI GATC 3 cut(s) 73, 253, 259
BssT1I CCWWGG 1 cut(s) 661
Bst4CI ACNGT 1 cut(s) 341
BstDEI CTNAG 1 cut(s) 656
BstDSI CCRYGG 1 cut(s) 661
BstEII GGTNACC 1 cut(s) 355
BstKTI GATC 3 cut(s) 76, 256, 262
BstMAI GTCTC 2 cut(s) 60, 417
BstMBI GATC 3 cut(s) 73, 253, 259
BstMWI GCNNNNNNNGC 2 cut(s) 629, 652
BstNSI RCATGY 1 cut(s) 479
BstPI GGTNACC 1 cut(s) 355
BstSFI CTRYAG 2 cut(s) 132, 139
BstV1I GCAGC 1 cut(s) 252
BtgI CCRYGG 1 cut(s) 661
Csp6I GTAC 3 cut(s) 204, 291, 523
CviAII CATG 6 cut(s) 31, 287, 476, 514, 518, 662
CviJI RGCY 7 cut(s) 50, 121, 138, 265, 308, 623, 660
CviKI_1 RGCY 7 cut(s) 50, 121, 138, 265, 308, 623, 660
CviQI GTAC 3 cut(s) 204, 291, 523
DdeI CTNAG 1 cut(s) 656
DpnI GATC 3 cut(s) 75, 255, 261
DpnII GATC 3 cut(s) 73, 253, 259
DraI TTTAAA 1 cut(s) 448
EciI GGCGGA 1 cut(s) 633
Ecl136II GAGCTC 1 cut(s) 121
Eco130I CCWWGG 1 cut(s) 661
Eco24I GRGCYC 1 cut(s) 123
Eco53kI GAGCTC 1 cut(s) 121
Eco91I GGTNACC 1 cut(s) 355
EcoICRI GAGCTC 1 cut(s) 121
EcoO65I GGTNACC 1 cut(s) 355
EcoT14I CCWWGG 1 cut(s) 661
EcoT22I ATGCAT 1 cut(s) 519
EcoT38I GRGCYC 1 cut(s) 123
ErhI CCWWGG 1 cut(s) 661
Esp3I CGTCTC 1 cut(s) 417
FaeI CATG 6 cut(s) 34, 290, 479, 517, 521, 665
FatI CATG 6 cut(s) 30, 286, 475, 513, 517, 661
Fnu4HI GCNGC 1 cut(s) 266
FriOI GRGCYC 1 cut(s) 123
Fsp4HI GCNGC 1 cut(s) 266
FspBI CTAG 3 cut(s) 197, 272, 396
GluI GCNGC 1 cut(s) 266
GsaI CCCAGC 1 cut(s) 540
HapII CCGG 1 cut(s) 152
Hin1II CATG 6 cut(s) 34, 290, 479, 517, 521, 665
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HpaI GTTAAC 1 cut(s) 187
HpaII CCGG 1 cut(s) 152
HphI GGTGA 2 cut(s) 310, 349
Hpy166II GTNNAC 2 cut(s) 187, 206
Hpy188III TCNNGA 3 cut(s) 152, 257, 272
Hpy8I GTNNAC 2 cut(s) 187, 206
HpyAV CCTTC 3 cut(s) 341, 346, 382
HpyCH4III ACNGT 1 cut(s) 341
HpyCH4V TGCA 5 cut(s) 300, 517, 603, 632, 674
HpyF10VI GCNNNNNNNGC 2 cut(s) 629, 652
HpyF3I CTNAG 1 cut(s) 656
Hsp92II CATG 6 cut(s) 34, 290, 479, 517, 521, 665
Kpn2I TCCGGA 1 cut(s) 151
KpnI GGTACC 1 cut(s) 294
KspAI GTTAAC 1 cut(s) 187
Kzo9I GATC 3 cut(s) 73, 253, 259
LmnI GCTCC 1 cut(s) 495
Lsp1109I GCAGC 1 cut(s) 252
LweI GCATC 1 cut(s) 661
MaeI CTAG 3 cut(s) 197, 272, 396
MaeIII GTNAC 4 cut(s) 126, 355, 380, 391
MalI GATC 3 cut(s) 75, 255, 261
MboI GATC 3 cut(s) 73, 253, 259
MboII GAAGA 3 cut(s) 70, 118, 680
MhlI GDGCHC 1 cut(s) 123
MluCI AATT 4 cut(s) 192, 333, 606, 682
MnlI CCTC 5 cut(s) 55, 279, 394, 463, 613
Mph1103I ATGCAT 1 cut(s) 519
MroI TCCGGA 1 cut(s) 151
MseI TTAA 4 cut(s) 186, 447, 531, 561
MslI CAYNNNNRTG 1 cut(s) 23
MspA1I CMGCKG 1 cut(s) 265
MspI CCGG 1 cut(s) 152
Mva1269I GAATGC 1 cut(s) 35
MwoI GCNNNNNNNGC 2 cut(s) 629, 652
NcoI CCATGG 1 cut(s) 661
NdeII GATC 3 cut(s) 73, 253, 259
NlaIII CATG 6 cut(s) 34, 290, 479, 517, 521, 665
NlaIV GGNNCC 1 cut(s) 292
NmeAIII GCCGAG 1 cut(s) 26
NmuCI GTSAC 1 cut(s) 355
NsiI ATGCAT 1 cut(s) 519
NspI RCATGY 1 cut(s) 479
PciI ACATGT 1 cut(s) 475
PctI GAATGC 1 cut(s) 35
PkrI GCNGC 1 cut(s) 267
PscI ACATGT 1 cut(s) 475
Psp124BI GAGCTC 1 cut(s) 123
PspEI GGTNACC 1 cut(s) 355
PspFI CCCAGC 1 cut(s) 536
PspN4I GGNNCC 1 cut(s) 292
PvuII CAGCTG 1 cut(s) 265
RsaI GTAC 3 cut(s) 205, 292, 524
RsaNI GTAC 3 cut(s) 204, 291, 523
RseI CAYNNNNRTG 1 cut(s) 23
SacI GAGCTC 1 cut(s) 123
SaqAI TTAA 4 cut(s) 186, 447, 531, 561
SatI GCNGC 1 cut(s) 266
Sau3AI GATC 3 cut(s) 73, 253, 259
SduI GDGCHC 1 cut(s) 123
SetI ASST 9 cut(s) 123, 133, 146, 202, 267, 357, 393, 414, 455
SfaNI GCATC 1 cut(s) 661
SfcI CTRYAG 2 cut(s) 132, 139
SmiMI CAYNNNNRTG 1 cut(s) 23
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
SpeI ACTAGT 1 cut(s) 395
Sse9I AATT 4 cut(s) 192, 333, 606, 682
SsiI CCGC 1 cut(s) 644
SspMI CTAG 3 cut(s) 197, 272, 396
SstI GAGCTC 1 cut(s) 123
StyI CCWWGG 1 cut(s) 661
TaaI ACNGT 1 cut(s) 341
TaqI TCGA 1 cut(s) 72
TasI AATT 4 cut(s) 192, 333, 606, 682
TatI WGTACW 1 cut(s) 522
Tru1I TTAA 4 cut(s) 186, 447, 531, 561
Tru9I TTAA 4 cut(s) 186, 447, 531, 561
TseFI GTSAC 1 cut(s) 355
TseI GCWGC 1 cut(s) 265
Tsp45I GTSAC 1 cut(s) 355
TspDTI ATGAA 2 cut(s) 7, 19
XapI RAATTY 2 cut(s) 192, 333
XbaI TCTAGA 1 cut(s) 271
XceI RCATGY 1 cut(s) 479
XspI CTAG 3 cut(s) 197, 272, 396
Zsp2I ATGCAT 1 cut(s) 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.