Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002327.1

Orthogroup ID

OG0009683

Physical Location & Seq

Genomic Coordinates Reverse (-)

15849 .. 16820

Gene Structure 972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002327.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

atgttgagttgggttttcatcattgtgttcatggcattctctccctcggcttccaagaagaaaggagacttcgatctgttgaagtgttcaaaagttgatgttgggaagaaagaaaaagagctgaagttacctacaggctataggttttctccggacgatgatgagttagttctgttttacttggttaacaaaattctaggtcgtacactacccataactgatgttatcaaagagatcgatttatatgagaatgatccggatcagctgcctctagatgattacagacatggtaccaagtgcaacgaagcgtattatttcaccaatgttgaacaaatttacagtagcgaagggaaggtcaccaagagaaccacaaagggtggttactggaaggtaactagtgagggaaaacaggttatatatggagacgacaaagtagttgttgggtttaaaacctctatgttattcaataaaggacatgttccagcaccaaaagggagcgtaagttcctttgtcatgcatgagtacagagttaatcccagcatagttcctgttgatgtgctgaatgacagcataagggcaaagattgagagatttgtggtatgcaaaattgtaagtaaagaggctcgtcctgcatataaacttccgccagaactgcttagccatggagaagatgcaaaatcaaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

228

Amino Acids

25.81

Weight (kDa)

8.55

Isoelectric Point (pI)

26.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009683)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g30290
malus_domestica	MD13G1063900.v1.1 MD16G1062600.v1.1
prunus_persica	Prupe.1G284800_v2.0.a1 Prupe.1G284900_v2.0.a1 Prupe.1G284900_v2.0.a1 Prupe.1G284900_v2.0.a1 Prupe.1G284900_v2.0.a1 Prupe.1G284900_v2.0.a1
pyrus_communis	pycom13g05640 pycom16g05470
rosa_chinensis	RchiOBHm_Chr4g0438571
rosa_laevigata	RLG00000006350
rosa_multiflora	Rmu_sc0002327.1_g000003
rosa_roxburghii	Rroxscaffold_5G00379580
rosa_rugosa	Rorug04G0311600
rosa_samantha	Rh4AG362000 Rh4BG373400 Rh4CG387300 Rh4DG368100
rosa_wichuraiana	Rw0G006670 Rw0G016620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	290
AccB1I	GGYRCC	1 cut(s)	290
AccIII	TCCGGA	2 cut(s)	151, 256
AciI	CCGC	1 cut(s)	644
AclWI	GGATC	2 cut(s)	248, 267
AcsI	RAATTY	2 cut(s)	192, 333
AcuI	CTGAAG	1 cut(s)	143
AfaI	GTAC	3 cut(s)	205, 292, 524
AflIII	ACRYGT	1 cut(s)	475
AgsI	TTSAA	4 cut(s)	82, 90, 329, 466
AhlI	ACTAGT	1 cut(s)	395
AloI	GAACNNNNNNTCC	2 cut(s)	487, 519
AluBI	AGCT	2 cut(s)	121, 265
AluI	AGCT	2 cut(s)	121, 265
Alw26I	GTCTC	2 cut(s)	60, 417
AlwI	GGATC	2 cut(s)	248, 267
Aor13HI	TCCGGA	2 cut(s)	151, 256
ApeKI	GCWGC	1 cut(s)	265
ApoI	RAATTY	2 cut(s)	192, 333
ArsI	GACNNNNNNTTYG	2 cut(s)	339, 371
Asp718I	GGTACC	1 cut(s)	290
AsuHPI	GGTGA	2 cut(s)	310, 349
BanI	GGYRCC	1 cut(s)	290
BbvI	GCAGC	1 cut(s)	252
BcoDI	GTCTC	2 cut(s)	60, 417
BcuI	ACTAGT	1 cut(s)	395
BfaI	CTAG	3 cut(s)	197, 272, 396
BfmI	CTRYAG	2 cut(s)	132, 139
BisI	GCNGC	1 cut(s)	266
BlpI	GCTNAGC	1 cut(s)	656
BlsI	GCNGC	1 cut(s)	267
BmiI	GGNNCC	1 cut(s)	292
BmsI	GCATC	1 cut(s)	661
Bpu1102I	GCTNAGC	1 cut(s)	656
Bsa29I	ATCGAT	1 cut(s)	237
BsaBI	GATNNNNATC	1 cut(s)	258
BsaJI	CCNNGG	2 cut(s)	45, 661
BsaWI	WCCGGW	2 cut(s)	151, 256
BsaXI	ACNNNNNCTCC	2 cut(s)	487, 517
Bse1I	ACTGG	1 cut(s)	389
Bse8I	GATNNNNATC	1 cut(s)	258
BseAI	TCCGGA	2 cut(s)	151, 256
BseCI	ATCGAT	1 cut(s)	237
BseDI	CCNNGG	2 cut(s)	45, 661
BseJI	GATNNNNATC	1 cut(s)	258
BseNI	ACTGG	1 cut(s)	389
BseXI	GCAGC	1 cut(s)	252
BseYI	CCCAGC	1 cut(s)	536
BshNI	GGYRCC	1 cut(s)	290
BshVI	ATCGAT	1 cut(s)	237
BsiSI	CCGG	2 cut(s)	152, 257
BsmAI	GTCTC	2 cut(s)	60, 417
BsmBI	CGTCTC	1 cut(s)	417
BsmI	GAATGC	1 cut(s)	35
Bsp13I	TCCGGA	2 cut(s)	151, 256
Bsp143I	GATC	4 cut(s)	73, 234, 253, 259
Bsp1720I	GCTNAGC	1 cut(s)	656
Bsp19I	CCATGG	1 cut(s)	661
BspACI	CCGC	1 cut(s)	644
BspDI	ATCGAT	1 cut(s)	237
BspEI	TCCGGA	2 cut(s)	151, 256
BspLI	GGNNCC	1 cut(s)	292
BspPI	GGATC	2 cut(s)	248, 267
BspT107I	GGYRCC	1 cut(s)	290
BsrI	ACTGG	1 cut(s)	389
BssECI	CCNNGG	2 cut(s)	45, 661
BssMI	GATC	4 cut(s)	73, 234, 253, 259
BssT1I	CCWWGG	1 cut(s)	661
Bst4CI	ACNGT	1 cut(s)	341
BstDEI	CTNAG	1 cut(s)	656
BstDSI	CCRYGG	1 cut(s)	661
BstEII	GGTNACC	1 cut(s)	355
BstKTI	GATC	4 cut(s)	76, 237, 256, 262
BstMAI	GTCTC	2 cut(s)	60, 417
BstMBI	GATC	4 cut(s)	73, 234, 253, 259
BstMWI	GCNNNNNNNGC	2 cut(s)	629, 652
BstNSI	RCATGY	1 cut(s)	479
BstPI	GGTNACC	1 cut(s)	355
BstSFI	CTRYAG	2 cut(s)	132, 139
BstV1I	GCAGC	1 cut(s)	252
Bsu15I	ATCGAT	1 cut(s)	237
BsuTUI	ATCGAT	1 cut(s)	237
BtgI	CCRYGG	1 cut(s)	661
ClaI	ATCGAT	1 cut(s)	237
Csp6I	GTAC	3 cut(s)	204, 291, 523
CviAII	CATG	6 cut(s)	31, 287, 476, 514, 518, 662
CviJI	RGCY	6 cut(s)	50, 121, 138, 265, 623, 660
CviKI_1	RGCY	6 cut(s)	50, 121, 138, 265, 623, 660
CviQI	GTAC	3 cut(s)	204, 291, 523
DdeI	CTNAG	1 cut(s)	656
DpnI	GATC	4 cut(s)	75, 236, 255, 261
DpnII	GATC	4 cut(s)	73, 234, 253, 259
DraI	TTTAAA	1 cut(s)	448
EciI	GGCGGA	1 cut(s)	633
Eco130I	CCWWGG	1 cut(s)	661
Eco57I	CTGAAG	1 cut(s)	143
Eco91I	GGTNACC	1 cut(s)	355
EcoO65I	GGTNACC	1 cut(s)	355
EcoT14I	CCWWGG	1 cut(s)	661
EcoT22I	ATGCAT	1 cut(s)	519
ErhI	CCWWGG	1 cut(s)	661
Esp3I	CGTCTC	1 cut(s)	417
FaeI	CATG	6 cut(s)	34, 290, 479, 517, 521, 665
FatI	CATG	6 cut(s)	30, 286, 475, 513, 517, 661
Fnu4HI	GCNGC	1 cut(s)	266
Fsp4HI	GCNGC	1 cut(s)	266
FspBI	CTAG	3 cut(s)	197, 272, 396
GluI	GCNGC	1 cut(s)	266
GsaI	CCCAGC	1 cut(s)	540
HapII	CCGG	2 cut(s)	152, 257
Hin1II	CATG	6 cut(s)	34, 290, 479, 517, 521, 665
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HpaI	GTTAAC	1 cut(s)	187
HpaII	CCGG	2 cut(s)	152, 257
HphI	GGTGA	2 cut(s)	310, 349
Hpy166II	GTNNAC	2 cut(s)	187, 206
Hpy188III	TCNNGA	3 cut(s)	152, 257, 272
Hpy8I	GTNNAC	2 cut(s)	187, 206
HpyAV	CCTTC	3 cut(s)	341, 346, 382
HpyCH4III	ACNGT	1 cut(s)	341
HpyCH4V	TGCA	5 cut(s)	300, 517, 603, 632, 674
HpyF10VI	GCNNNNNNNGC	2 cut(s)	629, 652
HpyF3I	CTNAG	1 cut(s)	656
Hsp92II	CATG	6 cut(s)	34, 290, 479, 517, 521, 665
Kpn2I	TCCGGA	2 cut(s)	151, 256
KpnI	GGTACC	1 cut(s)	294
KspAI	GTTAAC	1 cut(s)	187
Kzo9I	GATC	4 cut(s)	73, 234, 253, 259
LmnI	GCTCC	1 cut(s)	495
Lsp1109I	GCAGC	1 cut(s)	252
LweI	GCATC	1 cut(s)	661
MaeI	CTAG	3 cut(s)	197, 272, 396
MaeIII	GTNAC	4 cut(s)	126, 355, 380, 391
MalI	GATC	4 cut(s)	75, 236, 255, 261
MboI	GATC	4 cut(s)	73, 234, 253, 259
MboII	GAAGA	3 cut(s)	70, 118, 680
MluCI	AATT	4 cut(s)	192, 333, 606, 682
MnlI	CCTC	5 cut(s)	55, 279, 394, 463, 613
Mph1103I	ATGCAT	1 cut(s)	519
MroI	TCCGGA	2 cut(s)	151, 256
MseI	TTAA	3 cut(s)	186, 447, 531
MslI	CAYNNNNRTG	1 cut(s)	23
MspA1I	CMGCKG	1 cut(s)	265
MspI	CCGG	2 cut(s)	152, 257
Mva1269I	GAATGC	1 cut(s)	35
MwoI	GCNNNNNNNGC	2 cut(s)	629, 652
NcoI	CCATGG	1 cut(s)	661
NdeII	GATC	4 cut(s)	73, 234, 253, 259
NlaIII	CATG	6 cut(s)	34, 290, 479, 517, 521, 665
NlaIV	GGNNCC	1 cut(s)	292
NmeAIII	GCCGAG	1 cut(s)	26
NmuCI	GTSAC	1 cut(s)	355
NsiI	ATGCAT	1 cut(s)	519
NspI	RCATGY	1 cut(s)	479
PciI	ACATGT	1 cut(s)	475
PctI	GAATGC	1 cut(s)	35
PkrI	GCNGC	1 cut(s)	267
PscI	ACATGT	1 cut(s)	475
PspEI	GGTNACC	1 cut(s)	355
PspFI	CCCAGC	1 cut(s)	536
PspN4I	GGNNCC	1 cut(s)	292
PvuII	CAGCTG	1 cut(s)	265
RsaI	GTAC	3 cut(s)	205, 292, 524
RsaNI	GTAC	3 cut(s)	204, 291, 523
RseI	CAYNNNNRTG	1 cut(s)	23
SaqAI	TTAA	3 cut(s)	186, 447, 531
SatI	GCNGC	1 cut(s)	266
Sau3AI	GATC	4 cut(s)	73, 234, 253, 259
SetI	ASST	9 cut(s)	123, 133, 146, 202, 267, 357, 393, 414, 455
SfaNI	GCATC	1 cut(s)	661
SfcI	CTRYAG	2 cut(s)	132, 139
SmiMI	CAYNNNNRTG	1 cut(s)	23
SpeI	ACTAGT	1 cut(s)	395
Sse9I	AATT	4 cut(s)	192, 333, 606, 682
SsiI	CCGC	1 cut(s)	644
SspMI	CTAG	3 cut(s)	197, 272, 396
StyI	CCWWGG	1 cut(s)	661
TaaI	ACNGT	1 cut(s)	341
TaqI	TCGA	2 cut(s)	72, 237
TasI	AATT	4 cut(s)	192, 333, 606, 682
TatI	WGTACW	1 cut(s)	522
Tru1I	TTAA	3 cut(s)	186, 447, 531
Tru9I	TTAA	3 cut(s)	186, 447, 531
TseFI	GTSAC	1 cut(s)	355
TseI	GCWGC	1 cut(s)	265
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	2 cut(s)	7, 19
XapI	RAATTY	2 cut(s)	192, 333
XbaI	TCTAGA	1 cut(s)	271
XceI	RCATGY	1 cut(s)	479
XspI	CTAG	3 cut(s)	197, 272, 396
Zsp2I	ATGCAT	1 cut(s)	519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.