Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0009683

Physical Location & Seq

Genomic Coordinates Forward (+)

3531170 .. 3532041

Gene Structure 872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g05470.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGTCTTCCTCCATGGCATCCTCAGCTTCCCAATCTGCTGACGAAAACGAGGGGTTTGATCTGTTGAAGTGTTCGACGGTCCAAGAGGGCAAGAAAGATGCGGAGATCAGGTTACCGTTAGGGTATCGATTTGATCCCACCGGAGATGAGATTCTTGTGTACTACCTGTTTAACAAGATTATGGACCGTGCAATGCCTACCTACGATCTTATAAAAGAGGTTGATGTGTACGAGTGTGACCCGAATCAGCTGCCGAATGGTGACTTCAGACATACTGCCGATTTCAATGCTGCCTATTACTTCGCCAATAGAGAACCCTTTGACGCTTGTGAAGGCAAGATAATTAAGACGGCTACAAATGGTGGTTACTGGAAGGTGATCGATGACGAAGAGGAGGTTTTGTTCGAGGACAGCAATGTAATCGTAGGGTTTGAAACCGTCATGAAGTTCTACAAGGGGCAGGCGCCAAACGGGACCAAAACTCCCTTTGTCATGAACGAATACAGGCTCAATCCTCGTGTAGTACCTGCTCATGTGCTGAATGAAAGCATTAAGAATAAGATCGAGAAGTACGTGGTATGCCAAATTATAAACAAGGAGGTTTCGAATCAACCAGCAATCGAGTATGGACAGGGATTGCTCGAACTACTGCAAAAATCATCTGCCGGCACCGTTGAAGATGGAGTACCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

232

Amino Acids

26.0

Weight (kDa)

4.67

Isoelectric Point (pI)

41.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009683)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g30290
malus_domestica	MD13G1063900.v1.1 MD16G1062600.v1.1
prunus_persica	Prupe.1G284800_v2.0.a1 Prupe.1G284900_v2.0.a1 Prupe.1G284900_v2.0.a1 Prupe.1G284900_v2.0.a1 Prupe.1G284900_v2.0.a1 Prupe.1G284900_v2.0.a1
pyrus_communis	pycom13g05640 pycom16g05470
rosa_chinensis	RchiOBHm_Chr4g0438571
rosa_laevigata	RLG00000006350
rosa_multiflora	Rmu_sc0002327.1_g000003
rosa_roxburghii	Rroxscaffold_5G00379580
rosa_rugosa	Rorug04G0311600
rosa_samantha	Rh4AG362000 Rh4BG373400 Rh4CG387300 Rh4DG368100
rosa_wichuraiana	Rw0G006670 Rw0G016620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	212, 590
Acc36I	ACCTGC	1 cut(s)	535
AccB1I	GGYRCC	2 cut(s)	463, 668
AciI	CCGC	1 cut(s)	101
AclWI	GGATC	1 cut(s)	128
AcuI	CTGAAG	1 cut(s)	250
AcyI	GRCGYC	1 cut(s)	464
AfaI	GTAC	5 cut(s)	161, 230, 525, 572, 687
AgsI	TTSAA	4 cut(s)	67, 286, 434, 677
AloI	GAACNNNNNNTCC	2 cut(s)	386, 418
AluBI	AGCT	2 cut(s)	26, 250
AluI	AGCT	2 cut(s)	26, 250
AlwI	GGATC	1 cut(s)	128
ApeKI	GCWGC	2 cut(s)	250, 290
AspLEI	GCGC	1 cut(s)	466
AspS9I	GGNCC	3 cut(s)	79, 184, 474
AsuHPI	GGTGA	2 cut(s)	272, 388
AsuII	TTCGAA	1 cut(s)	605
AvaII	GGWCC	3 cut(s)	79, 184, 474
BanI	GGYRCC	2 cut(s)	463, 668
BarI	GAAGNNNNNNTAC	1 cut(s)	669
BauI	CACGAG	1 cut(s)	516
BbvCI	CCTCAGC	1 cut(s)	22
BbvI	GCAGC	2 cut(s)	237, 277
BccI	CCATC	1 cut(s)	674
BceAI	ACGGC	1 cut(s)	366
BcgI	CGANNNNNNTGC	6 cut(s)	232, 266, 269, 303, 403, 437
BfoI	RGCGCY	1 cut(s)	467
BfuAI	ACCTGC	1 cut(s)	535
BisI	GCNGC	2 cut(s)	251, 291
BlsI	GCNGC	2 cut(s)	252, 292
Bme18I	GGWCC	3 cut(s)	79, 184, 474
BmgT120I	GGNCC	3 cut(s)	79, 184, 474
BmiI	GGNNCC	3 cut(s)	465, 475, 670
BmsI	GCATC	2 cut(s)	26, 88
Bpu10I	CCTNAGC	1 cut(s)	22
Bpu14I	TTCGAA	1 cut(s)	605
Bsa29I	ATCGAT	2 cut(s)	127, 381
BsaAI	YACGTR	1 cut(s)	574
BsaHI	GRCGYC	1 cut(s)	464
BsaJI	CCNNGG	1 cut(s)	12
BsaWI	WCCGGW	1 cut(s)	140
BsaXI	ACNNNNNCTCC	6 cut(s)	95, 125, 386, 416, 466, 496
Bse118I	RCCGGY	1 cut(s)	665
Bse1I	ACTGG	1 cut(s)	374
Bse3DI	GCAATG	2 cut(s)	198, 421
BseCI	ATCGAT	2 cut(s)	127, 381
BseDI	CCNNGG	1 cut(s)	12
BseGI	GGATG	1 cut(s)	17
BseMI	GCAATG	2 cut(s)	198, 421
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	1 cut(s)	374
BseRI	GAGGAG	1 cut(s)	407
BseXI	GCAGC	2 cut(s)	237, 277
BshNI	GGYRCC	2 cut(s)	463, 668
BshVI	ATCGAT	2 cut(s)	127, 381
BsiSI	CCGG	2 cut(s)	141, 666
BslFI	GGGAC	1 cut(s)	487
BsmFI	GGGAC	1 cut(s)	487
Bsp119I	TTCGAA	1 cut(s)	605
Bsp143I	GATC	6 cut(s)	58, 105, 133, 205, 378, 561
Bsp19I	CCATGG	1 cut(s)	12
BspACI	CCGC	1 cut(s)	101
BspCNI	CTCAG	1 cut(s)	35
BspDI	ATCGAT	2 cut(s)	127, 381
BspHI	TCATGA	2 cut(s)	441, 492
BspLI	GGNNCC	3 cut(s)	465, 475, 670
BspMI	ACCTGC	1 cut(s)	535
BspPI	GGATC	1 cut(s)	128
BspT104I	TTCGAA	1 cut(s)	605
BspT107I	GGYRCC	2 cut(s)	463, 668
BsrDI	GCAATG	2 cut(s)	198, 421
BsrFI	RCCGGY	1 cut(s)	665
BsrI	ACTGG	1 cut(s)	374
BssAI	RCCGGY	1 cut(s)	665
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	6 cut(s)	58, 105, 133, 205, 378, 561
BssNI	GRCGYC	1 cut(s)	464
BssSI	CACGAG	1 cut(s)	516
BssT1I	CCWWGG	1 cut(s)	12
Bst2BI	CACGAG	1 cut(s)	516
Bst4CI	ACNGT	5 cut(s)	79, 117, 188, 439, 673
Bst6I	CTCTTC	1 cut(s)	384
BstACI	GRCGYC	1 cut(s)	464
BstBAI	YACGTR	1 cut(s)	574
BstBI	TTCGAA	1 cut(s)	605
BstC8I	GCNNGC	2 cut(s)	462, 667
BstDEI	CTNAG	1 cut(s)	22
BstDSI	CCRYGG	1 cut(s)	12
BstEII	GGTNACC	1 cut(s)	111
BstF5I	GGATG	1 cut(s)	17
BstH2I	RGCGCY	1 cut(s)	467
BstHHI	GCGC	1 cut(s)	466
BstKTI	GATC	6 cut(s)	61, 108, 136, 208, 381, 564
BstMBI	GATC	6 cut(s)	58, 105, 133, 205, 378, 561
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstPI	GGTNACC	1 cut(s)	111
BstV1I	GCAGC	2 cut(s)	237, 277
Bsu15I	ATCGAT	2 cut(s)	127, 381
BsuTUI	ATCGAT	2 cut(s)	127, 381
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	1 cut(s)	17
BveI	ACCTGC	1 cut(s)	535
Cac8I	GCNNGC	2 cut(s)	462, 667
CciI	TCATGA	2 cut(s)	441, 492
CfoI	GCGC	1 cut(s)	466
Cfr10I	RCCGGY	1 cut(s)	665
Cfr13I	GGNCC	3 cut(s)	79, 184, 474
ClaI	ATCGAT	2 cut(s)	127, 381
CseI	GACGC	1 cut(s)	332
Csp6I	GTAC	5 cut(s)	160, 229, 524, 571, 686
CviAII	CATG	4 cut(s)	13, 442, 493, 533
CviJI	RGCY	4 cut(s)	26, 250, 353, 508
CviKI_1	RGCY	4 cut(s)	26, 250, 353, 508
CviQI	GTAC	5 cut(s)	160, 229, 524, 571, 686
DdeI	CTNAG	1 cut(s)	22
DinI	GGCGCC	1 cut(s)	465
DpnI	GATC	6 cut(s)	60, 107, 135, 207, 380, 563
DpnII	GATC	6 cut(s)	58, 105, 133, 205, 378, 561
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
Eco130I	CCWWGG	1 cut(s)	12
Eco47I	GGWCC	3 cut(s)	79, 184, 474
Eco57I	CTGAAG	1 cut(s)	250
Eco91I	GGTNACC	1 cut(s)	111
EcoO65I	GGTNACC	1 cut(s)	111
EcoT14I	CCWWGG	1 cut(s)	12
EgeI	GGCGCC	1 cut(s)	465
EheI	GGCGCC	1 cut(s)	465
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	4 cut(s)	16, 445, 496, 536
FaqI	GGGAC	1 cut(s)	487
FatI	CATG	4 cut(s)	12, 441, 492, 532
Fnu4HI	GCNGC	2 cut(s)	251, 291
FokI	GGATG	1 cut(s)	4
Fsp4HI	GCNGC	2 cut(s)	251, 291
GlaI	GCGC	1 cut(s)	465
GluI	GCNGC	2 cut(s)	251, 291
HaeII	RGCGCY	1 cut(s)	467
HapII	CCGG	2 cut(s)	141, 666
HgaI	GACGC	1 cut(s)	332
HhaI	GCGC	1 cut(s)	466
Hin1I	GRCGYC	1 cut(s)	464
Hin1II	CATG	4 cut(s)	16, 445, 496, 536
Hin6I	GCGC	1 cut(s)	464
HinP1I	GCGC	1 cut(s)	464
HinfI	GANTC	3 cut(s)	151, 244, 607
HpaII	CCGG	2 cut(s)	141, 666
HphI	GGTGA	2 cut(s)	272, 388
Hpy166II	GTNNAC	2 cut(s)	160, 229
Hpy188I	TCNGA	1 cut(s)	269
Hpy188III	TCNNGA	3 cut(s)	442, 493, 565
Hpy8I	GTNNAC	2 cut(s)	160, 229
Hpy99I	CGWCG	1 cut(s)	79
HpyAV	CCTTC	2 cut(s)	326, 367
HpyCH4III	ACNGT	5 cut(s)	79, 117, 188, 439, 673
HpyCH4IV	ACGT	1 cut(s)	573
HpyCH4V	TGCA	2 cut(s)	191, 652
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	1 cut(s)	22
HpySE526I	ACGT	1 cut(s)	573
Hsp92I	GRCGYC	1 cut(s)	464
Hsp92II	CATG	4 cut(s)	16, 445, 496, 536
HspAI	GCGC	1 cut(s)	464
KasI	GGCGCC	1 cut(s)	463
KroI	GCCGGC	1 cut(s)	665
KroNI	GCCGGC	1 cut(s)	667
Kzo9I	GATC	6 cut(s)	58, 105, 133, 205, 378, 561
Lsp1109I	GCAGC	2 cut(s)	237, 277
LweI	GCATC	2 cut(s)	26, 88
MaeII	ACGT	1 cut(s)	573
MaeIII	GTNAC	4 cut(s)	111, 236, 260, 365
MalI	GATC	6 cut(s)	60, 107, 135, 207, 380, 563
MboI	GATC	6 cut(s)	58, 105, 133, 205, 378, 561
MboII	GAAGA	2 cut(s)	401, 689
MluCI	AATT	2 cut(s)	342, 585
Mly113I	GGCGCC	1 cut(s)	464
MroNI	GCCGGC	1 cut(s)	665
MseI	TTAA	3 cut(s)	171, 345, 552
MspA1I	CMGCKG	1 cut(s)	250
MspI	CCGG	2 cut(s)	141, 666
MwoI	GCNNNNNNNGC	1 cut(s)	23
NaeI	GCCGGC	1 cut(s)	667
NarI	GGCGCC	1 cut(s)	464
NcoI	CCATGG	1 cut(s)	12
NdeII	GATC	6 cut(s)	58, 105, 133, 205, 378, 561
NgoMIV	GCCGGC	1 cut(s)	665
NlaIII	CATG	4 cut(s)	16, 445, 496, 536
NlaIV	GGNNCC	3 cut(s)	465, 475, 670
NmuCI	GTSAC	2 cut(s)	236, 260
NspV	TTCGAA	1 cut(s)	605
PagI	TCATGA	2 cut(s)	441, 492
PcsI	WCGNNNNNNNCGW	1 cut(s)	570
PdiI	GCCGGC	1 cut(s)	667
PfeI	GAWTC	3 cut(s)	151, 244, 607
PkrI	GCNGC	2 cut(s)	252, 292
PluTI	GGCGCC	1 cut(s)	467
Ppu21I	YACGTR	1 cut(s)	574
PsiI	TTATAA	2 cut(s)	212, 590
PspEI	GGTNACC	1 cut(s)	111
PspN4I	GGNNCC	3 cut(s)	465, 475, 670
PspPI	GGNCC	3 cut(s)	79, 184, 474
PvuII	CAGCTG	1 cut(s)	250
RsaI	GTAC	5 cut(s)	161, 230, 525, 572, 687
RsaNI	GTAC	5 cut(s)	160, 229, 524, 571, 686
SaqAI	TTAA	3 cut(s)	171, 345, 552
SatI	GCNGC	2 cut(s)	251, 291
Sau3AI	GATC	6 cut(s)	58, 105, 133, 205, 378, 561
Sau96I	GGNCC	3 cut(s)	79, 184, 474
SfaNI	GCATC	2 cut(s)	26, 88
SfoI	GGCGCC	1 cut(s)	465
SfuI	TTCGAA	1 cut(s)	605
SinI	GGWCC	3 cut(s)	79, 184, 474
Sse9I	AATT	2 cut(s)	342, 585
SsiI	CCGC	1 cut(s)	101
SspDI	GGCGCC	1 cut(s)	463
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	5 cut(s)	79, 117, 188, 439, 673
TaiI	ACGT	1 cut(s)	576
TaqI	TCGA	8 cut(s)	74, 127, 381, 405, 564, 605, 621, 642
TasI	AATT	2 cut(s)	342, 585
TatI	WGTACW	1 cut(s)	159
TfiI	GAWTC	3 cut(s)	151, 244, 607
Tru1I	TTAA	3 cut(s)	171, 345, 552
Tru9I	TTAA	3 cut(s)	171, 345, 552
TseFI	GTSAC	2 cut(s)	236, 260
TseI	GCWGC	2 cut(s)	250, 290
Tsp45I	GTSAC	2 cut(s)	236, 260
TspDTI	ATGAA	3 cut(s)	458, 509, 558
VpaK11BI	GGWCC	3 cut(s)	79, 184, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.