FvH4_4g30620

Amino acid kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0008655
Physical Location & Seq
Reverse (-)
30138915 .. 30142660
3746 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g30620.t1

Sequence Viewer

Length: 1014 bp
ATGGAGGAGGAGAAGAGCAACACAACTCTGCAACAAAGCGGTTCTGTTCATCTCACAAAACCGATTCGTTGCATCGTCAAACTCGCAATTACTTGCAAGAATGAATTAGAGACCATAAATGAAGAGAATCTAAAGACGGTTTCCTCACAGTTGAGGCAATCGATGATTGCTGGATCGTCTTCTGGAAAGGTTATTGGGATGGATTGGAGCAGGAAAGCAGGAGAACCAGAAATTCCATCTACTGTGGATGATTTTGAAGATCAGCCAGTCGCGGAATCGAGTGCTTTTATAGTTGTTCATGGAGCAGGCTCTTTTGGACATTTTCAAGCTAGTAAATCTGGGGTTCATAAAGGAGGATGGAATCGACCCCTGGTCAAGGCTGGTTTTGTTGCCACCCGCATATCTGTTACGAATCTCAATCTTGAAATTGTTAGAGCCCTAGCCAGAGAGGGGATTCCTTCCATTGGGATGTCTCCATTTGCATGTGGCTGGTCAACTCGCGAAAGAAATATAGCCTCAGCTGATTTGTCTGTAGTGGCCAAGGCTATTGAATCTGGTTTAGTTCCTGTTCTGCATGGAGATGCTGTGCTCGATGACTTACTGGACTGCACCATATTGAGTGGAGATGTTATCATCAGTCATCTAGCAGCACACTTGAAGCCTGACTATGTTGTTTTTCTTACGGATGTTCTTGGTGTGTATGATCGTCCGCCATCAGAACCCAATGCAATACTCCTGAGAGAAATTGCTGTGGCTGAAGATGGGAGCTGGTCTGTTGTGAGGCCAACACTTGAGGACATGAAAAATCAAGTTAAAACAAGCGTAGCAGCCCATGATACAACTGGTGGAATGTTGACCAAGATAGCAGAAGCTGCAATGATTGCAAAGCTAGGGATCAATGTCTATATTGTGAAGGCAGCCACAAGCCATGCGTTGAGGGCGTTGAGCGGTGAATTGAAAGGCGAAATTCCTGATGACTGGCTGGGAACATTAATCCGGTTTTCAAGTAAATGA

Protein Analysis

338

Amino Acids

36.09

Weight (kDa)

5.75

Isoelectric Point (pI)

38.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_kinase PF00696 90 - 304 1.4e-32 Amino acid kinase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 948
AccII CGCG 2 cut(s) 272, 501
AciI CCGC 5 cut(s) 39, 272, 397, 710, 948
AclWI GGATC 2 cut(s) 181, 902
AcoI YGGCCR 1 cut(s) 537
AcsI RAATTY 2 cut(s) 231, 966
AcuI CTGAAG 1 cut(s) 777
AfiI CCNNNNNNNGG 3 cut(s) 376, 450, 464
AgsI TTSAA 7 cut(s) 257, 326, 425, 551, 658, 958, 1005
AhdI GACNNNNNGTC 1 cut(s) 371
AjnI CCWGG 1 cut(s) 369
AluBI AGCT 5 cut(s) 329, 521, 768, 872, 889
AluI AGCT 5 cut(s) 329, 521, 768, 872, 889
Alw21I GWGCWC 1 cut(s) 591
Alw26I GTCTC 2 cut(s) 104, 477
AlwI GGATC 2 cut(s) 181, 902
AlwNI CAGNNNCTG 1 cut(s) 872
AoxI GGCC 2 cut(s) 537, 782
ApeKI GCWGC 4 cut(s) 647, 827, 872, 917
ApoI RAATTY 2 cut(s) 231, 966
AseI ATTAAT 1 cut(s) 992
AsuHPI GGTGA 1 cut(s) 962
BalI TGGCCA 1 cut(s) 539
BanII GRGCYC 1 cut(s) 439
BbsI GAAGAC 1 cut(s) 171
Bbv12I GWGCWC 1 cut(s) 591
BbvCI CCTCAGC 1 cut(s) 517
BbvI GCAGC 4 cut(s) 659, 839, 859, 929
BccI CCATC 5 cut(s) 193, 244, 351, 721, 755
BciT130I CCWGG 1 cut(s) 371
BcoDI GTCTC 2 cut(s) 104, 477
BfaI CTAG 4 cut(s) 330, 440, 644, 890
BfmI CTRYAG 1 cut(s) 531
BisI GCNGC 4 cut(s) 648, 828, 873, 918
BlsI GCNGC 4 cut(s) 649, 829, 874, 919
Bme1390I CCNGG 1 cut(s) 371
BmeRI GACNNNNNGTC 1 cut(s) 371
BmrFI CCNGG 1 cut(s) 371
BmsI GCATC 2 cut(s) 81, 571
BpiI GAAGAC 1 cut(s) 171
Bpu10I CCTNAGC 1 cut(s) 517
BpuEI CTTGAG 1 cut(s) 812
Bsa29I ATCGAT 1 cut(s) 161
BsaI GGTCTC 1 cut(s) 104
BsaJI CCNNGG 2 cut(s) 369, 540
BsaWI WCCGGW 1 cut(s) 996
BsaXI ACNNNNNCTCC 2 cut(s) 570, 600
Bsc4I CCNNNNNNNGG 3 cut(s) 376, 450, 464
Bse1I ACTGG 4 cut(s) 266, 606, 847, 983
Bse3DI GCAATG 1 cut(s) 882
BseBI CCWGG 1 cut(s) 371
BseCI ATCGAT 1 cut(s) 161
BseDI CCNNGG 2 cut(s) 369, 540
BseGI GGATG 5 cut(s) 204, 253, 362, 474, 691
BseLI CCNNNNNNNGG 3 cut(s) 376, 450, 464
BseMI GCAATG 1 cut(s) 882
BseMII CTCAG 2 cut(s) 531, 728
BseNI ACTGG 4 cut(s) 266, 606, 847, 983
BseRI GAGGAG 2 cut(s) 20, 23
BseXI GCAGC 4 cut(s) 659, 839, 859, 929
BseYI CCCAGC 1 cut(s) 982
BsgI GTGCAG 1 cut(s) 592
Bsh1236I CGCG 2 cut(s) 272, 501
BshFI GGCC 2 cut(s) 539, 784
BshVI ATCGAT 1 cut(s) 161
BsiHKAI GWGCWC 1 cut(s) 591
BsiSI CCGG 1 cut(s) 997
BslI CCNNNNNNNGG 3 cut(s) 376, 450, 464
BsmAI GTCTC 2 cut(s) 104, 477
BsnI GGCC 2 cut(s) 539, 784
Bso31I GGTCTC 1 cut(s) 104
Bsp1286I GDGCHC 2 cut(s) 439, 591
Bsp143I GATC 4 cut(s) 173, 259, 703, 894
Bsp68I TCGCGA 1 cut(s) 501
BspACI CCGC 5 cut(s) 39, 272, 397, 710, 948
BspANI GGCC 2 cut(s) 539, 784
BspCNI CTCAG 2 cut(s) 530, 729
BspDI ATCGAT 1 cut(s) 161
BspFNI CGCG 2 cut(s) 272, 501
BspPI GGATC 2 cut(s) 181, 902
BspQI GCTCTTC 1 cut(s) 8
BspTNI GGTCTC 1 cut(s) 104
BsrBI CCGCTC 1 cut(s) 948
BsrDI GCAATG 1 cut(s) 882
BsrI ACTGG 4 cut(s) 266, 606, 847, 983
BssECI CCNNGG 2 cut(s) 369, 540
BssMI GATC 4 cut(s) 173, 259, 703, 894
BssT1I CCWWGG 1 cut(s) 540
Bst2UI CCWGG 1 cut(s) 371
Bst4CI ACNGT 3 cut(s) 139, 150, 244
Bst6I CTCTTC 2 cut(s) 8, 117
BstAPI GCANNNNNTGC 2 cut(s) 872, 881
BstC8I GCNNGC 1 cut(s) 307
BstDEI CTNAG 2 cut(s) 517, 737
BstENI CCTNNNNNAGG 1 cut(s) 374
BstF5I GGATG 5 cut(s) 204, 253, 362, 474, 691
BstFNI CGCG 2 cut(s) 272, 501
BstKTI GATC 4 cut(s) 176, 262, 706, 897
BstMAI GTCTC 2 cut(s) 104, 477
BstMBI GATC 4 cut(s) 173, 259, 703, 894
BstMWI GCNNNNNNNGC 3 cut(s) 872, 881, 938
BstNI CCWGG 1 cut(s) 371
BstNSI RCATGY 1 cut(s) 486
BstSCI CCNGG 1 cut(s) 369
BstSFI CTRYAG 1 cut(s) 531
BstUI CGCG 2 cut(s) 272, 501
BstV1I GCAGC 4 cut(s) 659, 839, 859, 929
BstV2I GAAGAC 1 cut(s) 171
Bsu15I ATCGAT 1 cut(s) 161
BsuRI GGCC 2 cut(s) 539, 784
BsuTUI ATCGAT 1 cut(s) 161
BtsCI GGATG 5 cut(s) 204, 253, 362, 474, 691
BtuMI TCGCGA 1 cut(s) 501
Cac8I GCNNGC 1 cut(s) 307
CaiI CAGNNNCTG 1 cut(s) 872
ClaI ATCGAT 1 cut(s) 161
CviAII CATG 6 cut(s) 299, 483, 575, 799, 833, 929
DdeI CTNAG 2 cut(s) 517, 737
DpnI GATC 4 cut(s) 175, 261, 705, 896
DpnII GATC 4 cut(s) 173, 259, 703, 894
DriI GACNNNNNGTC 1 cut(s) 371
EaeI YGGCCR 1 cut(s) 537
Eam1104I CTCTTC 2 cut(s) 8, 117
Eam1105I GACNNNNNGTC 1 cut(s) 371
EarI CTCTTC 2 cut(s) 8, 117
EciI GGCGGA 1 cut(s) 699
Eco130I CCWWGG 1 cut(s) 540
Eco24I GRGCYC 1 cut(s) 439
Eco31I GGTCTC 1 cut(s) 104
Eco57I CTGAAG 1 cut(s) 777
EcoNI CCTNNNNNAGG 1 cut(s) 374
EcoRII CCWGG 1 cut(s) 369
EcoT14I CCWWGG 1 cut(s) 540
EcoT38I GRGCYC 1 cut(s) 439
ErhI CCWWGG 1 cut(s) 540
FaeI CATG 6 cut(s) 302, 486, 578, 802, 836, 932
FatI CATG 6 cut(s) 298, 482, 574, 798, 832, 928
FauI CCCGC 1 cut(s) 404
Fnu4HI GCNGC 4 cut(s) 648, 828, 873, 918
FokI GGATG 5 cut(s) 211, 260, 369, 481, 698
FriOI GRGCYC 1 cut(s) 439
Fsp4HI GCNGC 4 cut(s) 648, 828, 873, 918
FspBI CTAG 4 cut(s) 330, 440, 644, 890
GluI GCNGC 4 cut(s) 648, 828, 873, 918
GsaI CCCAGC 1 cut(s) 986
HaeIII GGCC 2 cut(s) 539, 784
HapII CCGG 1 cut(s) 997
Hin1II CATG 6 cut(s) 302, 486, 578, 802, 836, 932
HincII GTYRAC 2 cut(s) 495, 855
HindII GTYRAC 2 cut(s) 495, 855
HinfI GANTC 7 cut(s) 64, 127, 275, 361, 412, 454, 551
HpaII CCGG 1 cut(s) 997
HphI GGTGA 1 cut(s) 962
Hpy166II GTNNAC 2 cut(s) 495, 855
Hpy188I TCNGA 1 cut(s) 718
Hpy188III TCNNGA 5 cut(s) 183, 422, 500, 736, 971
Hpy8I GTNNAC 2 cut(s) 495, 855
HpyAV CCTTC 2 cut(s) 468, 907
HpyCH4III ACNGT 3 cut(s) 139, 150, 244
HpyCH4V TGCA 9 cut(s) 31, 72, 96, 482, 574, 609, 728, 875, 884
HpyF10VI GCNNNNNNNGC 3 cut(s) 872, 881, 938
HpyF3I CTNAG 2 cut(s) 517, 737
Hsp92II CATG 6 cut(s) 302, 486, 578, 802, 836, 932
Kzo9I GATC 4 cut(s) 173, 259, 703, 894
LguI GCTCTTC 1 cut(s) 8
LmnI GCTCC 3 cut(s) 207, 302, 765
Lsp1109I GCAGC 4 cut(s) 659, 839, 859, 929
LweI GCATC 2 cut(s) 81, 571
MaeI CTAG 4 cut(s) 330, 440, 644, 890
MaeIII GTNAC 1 cut(s) 406
MalI GATC 4 cut(s) 175, 261, 705, 896
MbiI CCGCTC 1 cut(s) 948
MboI GATC 4 cut(s) 173, 259, 703, 894
MboII GAAGA 5 cut(s) 25, 134, 171, 269, 770
MhlI GDGCHC 2 cut(s) 439, 591
MlsI TGGCCA 1 cut(s) 539
MluCI AATT 7 cut(s) 87, 104, 231, 426, 744, 953, 966
MluNI TGGCCA 1 cut(s) 539
MnlI CCTC 8 cut(s) 147, 154, 347, 442, 526, 774, 787, 930
Mox20I TGGCCA 1 cut(s) 539
MscI TGGCCA 1 cut(s) 539
MseI TTAA 2 cut(s) 813, 992
MslI CAYNNNNRTG 3 cut(s) 467, 481, 579
Msp20I TGGCCA 1 cut(s) 539
MspA1I CMGCKG 1 cut(s) 521
MspI CCGG 1 cut(s) 997
MspR9I CCNGG 1 cut(s) 371
MvaI CCWGG 1 cut(s) 371
MvnI CGCG 2 cut(s) 272, 501
MwoI GCNNNNNNNGC 3 cut(s) 872, 881, 938
NdeII GATC 4 cut(s) 173, 259, 703, 894
NlaIII CATG 6 cut(s) 302, 486, 578, 802, 836, 932
NruI TCGCGA 1 cut(s) 501
NspI RCATGY 1 cut(s) 486
PciSI GCTCTTC 1 cut(s) 8
PfeI GAWTC 7 cut(s) 64, 127, 275, 361, 412, 454, 551
PkrI GCNGC 4 cut(s) 649, 829, 874, 919
PshBI ATTAAT 1 cut(s) 992
Psp6I CCWGG 1 cut(s) 369
PspFI CCCAGC 1 cut(s) 982
PspGI CCWGG 1 cut(s) 369
PstNI CAGNNNCTG 1 cut(s) 872
PvuII CAGCTG 1 cut(s) 521
RruI TCGCGA 1 cut(s) 501
RseI CAYNNNNRTG 3 cut(s) 467, 481, 579
SapI GCTCTTC 1 cut(s) 8
SaqAI TTAA 2 cut(s) 813, 992
SatI GCNGC 4 cut(s) 648, 828, 873, 918
Sau3AI GATC 4 cut(s) 173, 259, 703, 894
ScrFI CCNGG 1 cut(s) 371
SduI GDGCHC 2 cut(s) 439, 591
SetI ASST 6 cut(s) 192, 331, 523, 770, 874, 891
SfaNI GCATC 2 cut(s) 81, 571
SfcI CTRYAG 1 cut(s) 531
SmiMI CAYNNNNRTG 3 cut(s) 467, 481, 579
SmlI CTYRAG 1 cut(s) 791
SmoI CTYRAG 1 cut(s) 791
Sse9I AATT 7 cut(s) 87, 104, 231, 426, 744, 953, 966
SsiI CCGC 5 cut(s) 39, 272, 397, 710, 948
SspMI CTAG 4 cut(s) 330, 440, 644, 890
StyD4I CCNGG 1 cut(s) 369
StyI CCWWGG 1 cut(s) 540
TaaI ACNGT 3 cut(s) 139, 150, 244
TaqI TCGA 4 cut(s) 161, 278, 364, 591
TasI AATT 7 cut(s) 87, 104, 231, 426, 744, 953, 966
TfiI GAWTC 7 cut(s) 64, 127, 275, 361, 412, 454, 551
Tru1I TTAA 2 cut(s) 813, 992
Tru9I TTAA 2 cut(s) 813, 992
TseI GCWGC 4 cut(s) 647, 827, 872, 917
TspDTI ATGAA 6 cut(s) 38, 117, 135, 287, 335, 815
TspGWI ACGGA 1 cut(s) 698
VspI ATTAAT 1 cut(s) 992
XagI CCTNNNNNAGG 1 cut(s) 374
XapI RAATTY 2 cut(s) 231, 966
XceI RCATGY 1 cut(s) 486
XcmI CCANNNNNNNNNTGG 1 cut(s) 839
XspI CTAG 4 cut(s) 330, 440, 644, 890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.