Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0008655

Physical Location & Seq

Genomic Coordinates Reverse (-)

60192619 .. 60201879

Gene Structure 9261 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00380030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGAGGAGAAGAGTGACAAAACTCTGCAACAAAGCGGTTCTGTTCATCTCACAAAATCGATTCGTTGCATCGTCAAACTCGGAGGTGCAGCAATTACTTGCAAGAATGAATTAGAGACCGTAAATGAAGAGAATCTCAAGATGGTTTCCTCGCAGCTGAGGCAATCGATGATTGCTGGTTCGTCTTCTGGAAAGGTTCTTGGGATGGATTGGAGCAAGAAATCTGGAGAACCAGAAATTTCATTCACTGTGGATGATTTCGAAGATCAACCAGTTGTGGAGTCGAGCCCTTTTGTAGTTGTTCATGGAGCAGGCTCTTTTGGGCACTTTCAAGCTAGTAAATCTGGGGTGCATAAAGGAGGATGGAATCGACCCCTGGTCAAGGCTGGTTTTGTTGCCACCCGCATATCTGTTACGAATCTCAATCTTGAAATTGTTAGAGCCCTAGCCAGAGAGGGGATTCCTTCCATAGGAATGTCTCCATTTGCATGTGGATGGTCAACTAGCGAAAGGAATATAGCCTCAGCTGATTTGTCTGTAGTGACCAAGGCTATTGAATCTGGTTTAGTACCTGTTCTGCATGGAGATGCTGTGCTTGATGACTTACTGGACTGCACCATATTGAGTGGGGATGTTATCATCAGTCATCTAGCAGCACACTTGAAGCCTGACTACGTTGTTTTTCTTGTATCCACCATTCGAAATGAGAAACTTTCACGGATGTTCTCGGGGATGGGAGCTGGACTATTGGTGAAGTTTTACTTATTTAGCACAGCCCATGATACAACTGGTAAAGTATTAATCCCTCACCTTCCCTTCGTTCTTTCTTCCACTTTAATGCTCATAATTTCACATAGTTGTGTGATGTCGCACCTTTGGACAAAAAATATGGCCACAGCAGTGACAGTAGCGAGTTCTATCGCCAGAGATGGGGGCACAGTAGTCGTTGCCAAAAAAGAAACGGTTATCAACATTAAAGGTACCAACGGAAATCTCTCCTTCTTCGAAACACCATCACCTCGTGCTACTACGCATCGGCAGTCTTCTTACACGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016114 GO:0016740 GO:0016772 GO:0016776 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0102043 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_kinase

Protein Analysis

352

Amino Acids

37.75

Weight (kDa)

8.23

Isoelectric Point (pI)

41.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_kinase	PF00696	22 - 229	1.6e-18	Amino acid kinase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26640
fragaria_vesca	FvH4_4g30620 FvH4_4g30620 FvH4_4g30620 FvH4_4g30620 FvH4_4g30620
malus_domestica	MD13G1067400.v1.1
prunus_persica	Prupe.1G280800_v2.0.a1 Prupe.1G280800_v2.0.a1
pyrus_communis	pycom13g05930
rosa_chinensis	RchiOBHm_Chr4g0439031
rosa_laevigata	RLG00000006308
rosa_multiflora	Rmu_sc0005887.1_g000014 Rmu_sc0022205.1_g000002
rosa_roxburghii	Rroxscaffold_5G00380030
rosa_rugosa	Rorug04G0315200 Rorug04G0315200
rosa_samantha	Rh4AG365800 Rh4BG377100 Rh4CG391200 Rh4DG371800
rosa_wichuraiana	Rw0G007410 Rw0G016960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	980
AccB1I	GGYRCC	1 cut(s)	980
AciI	CCGC	2 cut(s)	36, 403
AcoI	YGGCCR	1 cut(s)	891
AcsI	RAATTY	1 cut(s)	237
AdeI	CACNNNGTG	1 cut(s)	1022
AfaI	GTAC	2 cut(s)	570, 982
AfiI	CCNNNNNNNGG	4 cut(s)	382, 456, 470, 930
AgsI	TTSAA	4 cut(s)	332, 431, 557, 664
AhdI	GACNNNNNGTC	1 cut(s)	377
AjnI	CCWGG	1 cut(s)	375
AleI	CACNNNNGTG	1 cut(s)	899
AluBI	AGCT	4 cut(s)	157, 335, 527, 740
AluI	AGCT	4 cut(s)	157, 335, 527, 740
Alw26I	GTCTC	2 cut(s)	110, 483
Ama87I	CYCGRG	1 cut(s)	727
AoxI	GGCC	1 cut(s)	891
ApeKI	GCWGC	3 cut(s)	89, 154, 653
ApoI	RAATTY	1 cut(s)	237
AseI	ATTAAT	1 cut(s)	800
Asp718I	GGTACC	1 cut(s)	980
AsuHPI	GGTGA	3 cut(s)	763, 800, 1008
AsuII	TTCGAA	3 cut(s)	261, 700, 1005
AvaI	CYCGRG	1 cut(s)	727
BaeGI	GKGCMC	2 cut(s)	327, 938
BalI	TGGCCA	1 cut(s)	893
BanI	GGYRCC	1 cut(s)	980
BanII	GRGCYC	2 cut(s)	290, 445
BarI	GAAGNNNNNNTAC	2 cut(s)	656, 688
BauI	CACGAG	1 cut(s)	1020
BbsI	GAAGAC	2 cut(s)	177, 1035
BbvCI	CCTCAGC	2 cut(s)	158, 523
BbvI	GCAGC	3 cut(s)	101, 166, 665
BccI	CCATC	7 cut(s)	136, 199, 357, 489, 727, 923, 1021
BcgI	CGANNNNNNTGC	2 cut(s)	925, 959
BciT130I	CCWGG	1 cut(s)	377
BciVI	GTATCC	1 cut(s)	700
BcoDI	GTCTC	2 cut(s)	110, 483
BfaI	CTAG	4 cut(s)	336, 446, 504, 650
BfmI	CTRYAG	1 cut(s)	537
BfuI	GTATCC	1 cut(s)	700
BisI	GCNGC	3 cut(s)	90, 155, 654
BlsI	GCNGC	3 cut(s)	91, 156, 655
Bme1390I	CCNGG	1 cut(s)	377
BmeRI	GACNNNNNGTC	1 cut(s)	377
BmeT110I	CYCGRG	1 cut(s)	727
BmiI	GGNNCC	1 cut(s)	982
BmrFI	CCNGG	1 cut(s)	377
BmsI	GCATC	3 cut(s)	78, 577, 1042
BpiI	GAAGAC	2 cut(s)	177, 1035
BpmI	CTGGAG	1 cut(s)	246
Bpu10I	CCTNAGC	2 cut(s)	158, 523
Bpu14I	TTCGAA	3 cut(s)	261, 700, 1005
BpuEI	CTTGAG	1 cut(s)	122
Bsa29I	ATCGAT	2 cut(s)	59, 167
BsaI	GGTCTC	1 cut(s)	110
BsaJI	CCNNGG	2 cut(s)	375, 546
BsaXI	ACNNNNNCTCC	2 cut(s)	576, 606
Bsc4I	CCNNNNNNNGG	4 cut(s)	382, 456, 470, 930
Bse1I	ACTGG	3 cut(s)	272, 612, 793
BseBI	CCWGG	1 cut(s)	377
BseCI	ATCGAT	2 cut(s)	59, 167
BseDI	CCNNGG	2 cut(s)	375, 546
BseGI	GGATG	7 cut(s)	210, 259, 368, 500, 637, 726, 738
BseLI	CCNNNNNNNGG	4 cut(s)	382, 456, 470, 930
BseMII	CTCAG	2 cut(s)	149, 537
BseNI	ACTGG	3 cut(s)	272, 612, 793
BseRI	GAGGAG	1 cut(s)	20
BseSI	GKGCMC	2 cut(s)	327, 938
BseXI	GCAGC	3 cut(s)	101, 166, 665
BsgI	GTGCAG	2 cut(s)	108, 598
BshFI	GGCC	1 cut(s)	893
BshNI	GGYRCC	1 cut(s)	980
BshVI	ATCGAT	2 cut(s)	59, 167
BsiHKCI	CYCGRG	1 cut(s)	727
BslI	CCNNNNNNNGG	4 cut(s)	382, 456, 470, 930
BsmAI	GTCTC	2 cut(s)	110, 483
BsnI	GGCC	1 cut(s)	893
Bso31I	GGTCTC	1 cut(s)	110
BsoBI	CYCGRG	1 cut(s)	727
Bsp119I	TTCGAA	3 cut(s)	261, 700, 1005
Bsp1286I	GDGCHC	4 cut(s)	290, 327, 445, 938
Bsp143I	GATC	1 cut(s)	265
BspACI	CCGC	2 cut(s)	36, 403
BspANI	GGCC	1 cut(s)	893
BspCNI	CTCAG	2 cut(s)	150, 536
BspDI	ATCGAT	2 cut(s)	59, 167
BspLI	GGNNCC	1 cut(s)	982
BspT104I	TTCGAA	3 cut(s)	261, 700, 1005
BspT107I	GGYRCC	1 cut(s)	980
BspTNI	GGTCTC	1 cut(s)	110
BsrI	ACTGG	3 cut(s)	272, 612, 793
BssECI	CCNNGG	2 cut(s)	375, 546
BssMI	GATC	1 cut(s)	265
BssSI	CACGAG	1 cut(s)	1020
BssT1I	CCWWGG	1 cut(s)	546
Bst2BI	CACGAG	1 cut(s)	1020
Bst2UI	CCWGG	1 cut(s)	377
Bst4CI	ACNGT	5 cut(s)	121, 250, 907, 940, 964
Bst6I	CTCTTC	2 cut(s)	5, 123
BstBI	TTCGAA	3 cut(s)	261, 700, 1005
BstC8I	GCNNGC	1 cut(s)	313
BstDEI	CTNAG	2 cut(s)	158, 523
BstENI	CCTNNNNNAGG	2 cut(s)	380, 468
BstF5I	GGATG	7 cut(s)	210, 259, 368, 500, 637, 726, 738
BstKTI	GATC	1 cut(s)	268
BstMAI	GTCTC	2 cut(s)	110, 483
BstMBI	GATC	1 cut(s)	265
BstMWI	GCNNNNNNNGC	1 cut(s)	160
BstNI	CCWGG	1 cut(s)	377
BstNSI	RCATGY	1 cut(s)	492
BstSCI	CCNGG	1 cut(s)	375
BstSFI	CTRYAG	1 cut(s)	537
BstSLI	GKGCMC	2 cut(s)	327, 938
BstV1I	GCAGC	3 cut(s)	101, 166, 665
BstV2I	GAAGAC	2 cut(s)	177, 1035
Bsu15I	ATCGAT	2 cut(s)	59, 167
BsuI	GTATCC	1 cut(s)	700
BsuRI	GGCC	1 cut(s)	893
BsuTUI	ATCGAT	2 cut(s)	59, 167
BtsCI	GGATG	7 cut(s)	210, 259, 368, 500, 637, 726, 738
BtsI	GCAGTG	1 cut(s)	906
BtsIMutI	CAGTG	2 cut(s)	246, 906
Cac8I	GCNNGC	1 cut(s)	313
ClaI	ATCGAT	2 cut(s)	59, 167
Csp6I	GTAC	2 cut(s)	569, 981
CviAII	CATG	4 cut(s)	305, 489, 581, 779
CviQI	GTAC	2 cut(s)	569, 981
DdeI	CTNAG	2 cut(s)	158, 523
DpnI	GATC	1 cut(s)	267
DpnII	GATC	1 cut(s)	265
DraIII	CACNNNGTG	1 cut(s)	1022
DriI	GACNNNNNGTC	1 cut(s)	377
EaeI	YGGCCR	1 cut(s)	891
Eam1104I	CTCTTC	2 cut(s)	5, 123
Eam1105I	GACNNNNNGTC	1 cut(s)	377
EarI	CTCTTC	2 cut(s)	5, 123
Eco130I	CCWWGG	1 cut(s)	546
Eco24I	GRGCYC	2 cut(s)	290, 445
Eco31I	GGTCTC	1 cut(s)	110
Eco88I	CYCGRG	1 cut(s)	727
EcoNI	CCTNNNNNAGG	2 cut(s)	380, 468
EcoRII	CCWGG	1 cut(s)	375
EcoT14I	CCWWGG	1 cut(s)	546
EcoT38I	GRGCYC	2 cut(s)	290, 445
ErhI	CCWWGG	1 cut(s)	546
FaeI	CATG	4 cut(s)	308, 492, 584, 782
FalI	AAGNNNNNCTT	2 cut(s)	746, 778
FatI	CATG	4 cut(s)	304, 488, 580, 778
FauI	CCCGC	1 cut(s)	410
Fnu4HI	GCNGC	3 cut(s)	90, 155, 654
FokI	GGATG	7 cut(s)	217, 266, 375, 507, 644, 733, 745
FriOI	GRGCYC	2 cut(s)	290, 445
Fsp4HI	GCNGC	3 cut(s)	90, 155, 654
FspBI	CTAG	4 cut(s)	336, 446, 504, 650
GluI	GCNGC	3 cut(s)	90, 155, 654
GsuI	CTGGAG	1 cut(s)	246
HaeIII	GGCC	1 cut(s)	893
Hin1II	CATG	4 cut(s)	308, 492, 584, 782
HincII	GTYRAC	1 cut(s)	501
HindII	GTYRAC	1 cut(s)	501
HinfI	GANTC	7 cut(s)	61, 133, 281, 367, 418, 460, 557
HphI	GGTGA	3 cut(s)	763, 800, 1008
Hpy166II	GTNNAC	1 cut(s)	501
Hpy188I	TCNGA	1 cut(s)	83
Hpy188III	TCNNGA	4 cut(s)	139, 189, 225, 428
Hpy8I	GTNNAC	1 cut(s)	501
HpyAV	CCTTC	4 cut(s)	474, 821, 826, 1009
HpyCH4III	ACNGT	5 cut(s)	121, 250, 907, 940, 964
HpyCH4IV	ACGT	1 cut(s)	675
HpyCH4V	TGCA	8 cut(s)	28, 69, 89, 102, 352, 488, 580, 615
HpyF10VI	GCNNNNNNNGC	1 cut(s)	160
HpyF3I	CTNAG	2 cut(s)	158, 523
HpySE526I	ACGT	1 cut(s)	675
Hsp92II	CATG	4 cut(s)	308, 492, 584, 782
KpnI	GGTACC	1 cut(s)	984
Kzo9I	GATC	1 cut(s)	265
LmnI	GCTCC	3 cut(s)	213, 308, 737
Lsp1109I	GCAGC	3 cut(s)	101, 166, 665
LweI	GCATC	3 cut(s)	78, 577, 1042
MaeI	CTAG	4 cut(s)	336, 446, 504, 650
MaeII	ACGT	1 cut(s)	675
MaeIII	GTNAC	4 cut(s)	14, 412, 541, 901
MalI	GATC	1 cut(s)	267
MboI	GATC	1 cut(s)	265
MboII	GAAGA	7 cut(s)	22, 140, 177, 275, 819, 994, 1035
MhlI	GDGCHC	4 cut(s)	290, 327, 445, 938
MlsI	TGGCCA	1 cut(s)	893
MluCI	AATT	5 cut(s)	93, 110, 237, 432, 846
MluNI	TGGCCA	1 cut(s)	893
MlyI	GAGTC	1 cut(s)	290
MnlI	CCTC	8 cut(s)	77, 153, 160, 353, 448, 532, 816, 1029
Mox20I	TGGCCA	1 cut(s)	893
MscI	TGGCCA	1 cut(s)	893
MseI	TTAA	3 cut(s)	800, 836, 975
MslI	CAYNNNNRTG	7 cut(s)	473, 487, 493, 585, 836, 858, 899
Msp20I	TGGCCA	1 cut(s)	893
MspA1I	CMGCKG	2 cut(s)	157, 527
MspR9I	CCNGG	1 cut(s)	377
MvaI	CCWGG	1 cut(s)	377
MwoI	GCNNNNNNNGC	1 cut(s)	160
NdeII	GATC	1 cut(s)	265
NlaIII	CATG	4 cut(s)	308, 492, 584, 782
NlaIV	GGNNCC	1 cut(s)	982
NmuCI	GTSAC	3 cut(s)	14, 541, 901
NspI	RCATGY	1 cut(s)	492
NspV	TTCGAA	3 cut(s)	261, 700, 1005
OliI	CACNNNNGTG	1 cut(s)	899
PfeI	GAWTC	6 cut(s)	61, 133, 367, 418, 460, 557
PkrI	GCNGC	3 cut(s)	91, 156, 655
PleI	GAGTC	1 cut(s)	289
PpsI	GAGTC	1 cut(s)	289
PshBI	ATTAAT	1 cut(s)	800
Psp6I	CCWGG	1 cut(s)	375
PspGI	CCWGG	1 cut(s)	375
PspN4I	GGNNCC	1 cut(s)	982
PvuII	CAGCTG	2 cut(s)	157, 527
RsaI	GTAC	2 cut(s)	570, 982
RsaNI	GTAC	2 cut(s)	569, 981
RseI	CAYNNNNRTG	7 cut(s)	473, 487, 493, 585, 836, 858, 899
SaqAI	TTAA	3 cut(s)	800, 836, 975
SatI	GCNGC	3 cut(s)	90, 155, 654
Sau3AI	GATC	1 cut(s)	265
SchI	GAGTC	1 cut(s)	290
ScrFI	CCNGG	1 cut(s)	377
SduI	GDGCHC	4 cut(s)	290, 327, 445, 938
SfaNI	GCATC	3 cut(s)	78, 577, 1042
SfcI	CTRYAG	1 cut(s)	537
SfuI	TTCGAA	3 cut(s)	261, 700, 1005
SmiMI	CAYNNNNRTG	7 cut(s)	473, 487, 493, 585, 836, 858, 899
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	5 cut(s)	93, 110, 237, 432, 846
SsiI	CCGC	2 cut(s)	36, 403
SspMI	CTAG	4 cut(s)	336, 446, 504, 650
StyD4I	CCNGG	1 cut(s)	375
StyI	CCWWGG	1 cut(s)	546
TaaI	ACNGT	5 cut(s)	121, 250, 907, 940, 964
TaiI	ACGT	1 cut(s)	678
TaqI	TCGA	7 cut(s)	59, 167, 261, 284, 370, 700, 1005
TasI	AATT	5 cut(s)	93, 110, 237, 432, 846
TfiI	GAWTC	6 cut(s)	61, 133, 367, 418, 460, 557
Tru1I	TTAA	3 cut(s)	800, 836, 975
Tru9I	TTAA	3 cut(s)	800, 836, 975
TscAI	CASTG	2 cut(s)	253, 906
TseFI	GTSAC	3 cut(s)	14, 541, 901
TseI	GCWGC	3 cut(s)	89, 154, 653
Tsp45I	GTSAC	3 cut(s)	14, 541, 901
TspDTI	ATGAA	5 cut(s)	35, 123, 141, 231, 293
TspGWI	ACGGA	2 cut(s)	733, 1002
TspRI	CASTG	2 cut(s)	253, 906
VspI	ATTAAT	1 cut(s)	800
XagI	CCTNNNNNAGG	2 cut(s)	380, 468
XapI	RAATTY	1 cut(s)	237
XceI	RCATGY	1 cut(s)	492
XcmI	CCANNNNNNNNNTGG	1 cut(s)	785
XspI	CTAG	4 cut(s)	336, 446, 504, 650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.