Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005887.1

Orthogroup ID

OG0008655

Physical Location & Seq

Genomic Coordinates Reverse (-)

47997 .. 50515

Gene Structure 2519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005887.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

atggaggagaagagtgacaaaactctgcaacaaagcggttctgttcatctcacaaaatcgattcgttgcatcgtcaaactcggaggtgcagcaattacttgcaagaatgaattagagaccataaatgaagagaatctcaagatggtttcctcgcagctgaggcaatcgatgattgctggttcgtcttctggaaaggttcttgggatggattggagcaagaaatctggagaaccagaaatttcattcactgtggatgatttcgaagatcaaccagttgcagagtcgagcccttttgtagttgttcatggagcaggctcttttgggcactttcaagctagtaaatctggggtgcataaaggaggatggaatcgacccctggtcaaggctggttttgttgccacccgcatatctgttacgaatctcaatcttgaaattgttagagccctagccagagaggggattccttccataggaatgtctccatttgcatgtggatggtcaactagcgaaaggaatgtagcctcagctgatttgtctgtattgaccaaggctattgaatctggtttagtacctgttctgcatggagatgctgtgctcgatgacttactggactgcaccatattgagtggggatgttatcatcagtcatctagcagcacacttgaagcctgactacgttgtttttcttacggatgttctcggggtatatgatcgtccaccatcagaacccaatgcaatactcttgagagaaattgctgtggctgaagatgggagctggtccgttgtcaggccaacacttcaggacatgaatactcgagttaaaactagtgtagcagcccatgatacaactggtggaatgatgaccaagataggagaagctgcaatgattgcaaagctagggatcaatgtctatattgtgaaggcagccacaagccatgcgttgagggccttgagcggtgaattgcaaggcgaaattcctgatgattggcttggaacattaatccggttttcaagtaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016114 GO:0016740 GO:0016772 GO:0016776 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0102043 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_kinase

Protein Analysis

339

Amino Acids

36.21

Weight (kDa)

5.74

Isoelectric Point (pI)

41.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26640
fragaria_vesca	FvH4_4g30620 FvH4_4g30620 FvH4_4g30620 FvH4_4g30620 FvH4_4g30620
malus_domestica	MD13G1067400.v1.1
prunus_persica	Prupe.1G280800_v2.0.a1 Prupe.1G280800_v2.0.a1
pyrus_communis	pycom13g05930
rosa_chinensis	RchiOBHm_Chr4g0439031
rosa_laevigata	RLG00000006308
rosa_multiflora	Rmu_sc0005887.1_g000014 Rmu_sc0022205.1_g000002
rosa_roxburghii	Rroxscaffold_5G00380030
rosa_rugosa	Rorug04G0315200 Rorug04G0315200
rosa_samantha	Rh4AG365800 Rh4BG377100 Rh4CG391200 Rh4DG371800
rosa_wichuraiana	Rw0G007410 Rw0G016960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	954
AciI	CCGC	3 cut(s)	36, 403, 954
AclWI	GGATC	1 cut(s)	908
AcsI	RAATTY	2 cut(s)	237, 972
AcuI	CTGAAG	2 cut(s)	782, 783
AfaI	GTAC	1 cut(s)	570
AfiI	CCNNNNNNNGG	4 cut(s)	382, 456, 470, 786
AgsI	TTSAA	5 cut(s)	332, 431, 557, 664, 1011
AhdI	GACNNNNNGTC	1 cut(s)	377
AhlI	ACTAGT	1 cut(s)	824
AjnI	CCWGG	1 cut(s)	375
AluBI	AGCT	6 cut(s)	157, 335, 527, 774, 878, 895
AluI	AGCT	6 cut(s)	157, 335, 527, 774, 878, 895
Alw21I	GWGCWC	1 cut(s)	597
Alw26I	GTCTC	2 cut(s)	110, 483
AlwI	GGATC	1 cut(s)	908
Ama87I	CYCGRG	2 cut(s)	698, 813
AoxI	GGCC	2 cut(s)	788, 945
ApeKI	GCWGC	6 cut(s)	89, 154, 653, 833, 878, 923
ApoI	RAATTY	2 cut(s)	237, 972
AseI	ATTAAT	1 cut(s)	998
AspS9I	GGNCC	2 cut(s)	777, 945
AsuHPI	GGTGA	1 cut(s)	968
AsuII	TTCGAA	1 cut(s)	261
AvaI	CYCGRG	2 cut(s)	698, 813
AvaII	GGWCC	1 cut(s)	777
BaeGI	GKGCMC	1 cut(s)	327
BanII	GRGCYC	2 cut(s)	290, 445
BarI	GAAGNNNNNNTAC	2 cut(s)	656, 688
BbsI	GAAGAC	1 cut(s)	177
Bbv12I	GWGCWC	1 cut(s)	597
BbvCI	CCTCAGC	2 cut(s)	158, 523
BbvI	GCAGC	6 cut(s)	101, 166, 665, 845, 865, 935
BccI	CCATC	6 cut(s)	136, 199, 357, 489, 727, 761
BciT130I	CCWGG	1 cut(s)	377
BcoDI	GTCTC	2 cut(s)	110, 483
BcuI	ACTAGT	1 cut(s)	824
BfaI	CTAG	6 cut(s)	336, 446, 504, 650, 825, 896
BisI	GCNGC	6 cut(s)	90, 155, 654, 834, 879, 924
BlsI	GCNGC	6 cut(s)	91, 156, 655, 835, 880, 925
Bme1390I	CCNGG	1 cut(s)	377
Bme18I	GGWCC	1 cut(s)	777
BmeRI	GACNNNNNGTC	1 cut(s)	377
BmeT110I	CYCGRG	2 cut(s)	698, 813
BmgT120I	GGNCC	2 cut(s)	777, 945
BmrFI	CCNGG	1 cut(s)	377
BmsI	GCATC	2 cut(s)	78, 577
BpiI	GAAGAC	1 cut(s)	177
BpmI	CTGGAG	1 cut(s)	246
Bpu10I	CCTNAGC	2 cut(s)	158, 523
Bpu14I	TTCGAA	1 cut(s)	261
BpuEI	CTTGAG	3 cut(s)	122, 763, 970
Bsa29I	ATCGAT	2 cut(s)	59, 167
BsaI	GGTCTC	1 cut(s)	110
BsaJI	CCNNGG	2 cut(s)	375, 546
BsaWI	WCCGGW	1 cut(s)	1002
BsaXI	ACNNNNNCTCC	2 cut(s)	576, 606
Bsc4I	CCNNNNNNNGG	4 cut(s)	382, 456, 470, 786
Bse1I	ACTGG	3 cut(s)	272, 612, 853
Bse3DI	GCAATG	1 cut(s)	888
BseBI	CCWGG	1 cut(s)	377
BseCI	ATCGAT	2 cut(s)	59, 167
BseDI	CCNNGG	2 cut(s)	375, 546
BseGI	GGATG	6 cut(s)	210, 259, 368, 500, 637, 697
BseLI	CCNNNNNNNGG	4 cut(s)	382, 456, 470, 786
BseMI	GCAATG	1 cut(s)	888
BseMII	CTCAG	2 cut(s)	149, 537
BseNI	ACTGG	3 cut(s)	272, 612, 853
BseRI	GAGGAG	1 cut(s)	20
BseSI	GKGCMC	1 cut(s)	327
BseXI	GCAGC	6 cut(s)	101, 166, 665, 845, 865, 935
BsgI	GTGCAG	2 cut(s)	108, 598
BshFI	GGCC	2 cut(s)	790, 947
BshVI	ATCGAT	2 cut(s)	59, 167
BsiHKAI	GWGCWC	1 cut(s)	597
BsiHKCI	CYCGRG	2 cut(s)	698, 813
BsiSI	CCGG	1 cut(s)	1003
BslI	CCNNNNNNNGG	4 cut(s)	382, 456, 470, 786
BsmAI	GTCTC	2 cut(s)	110, 483
BsnI	GGCC	2 cut(s)	790, 947
Bso31I	GGTCTC	1 cut(s)	110
BsoBI	CYCGRG	2 cut(s)	698, 813
Bsp119I	TTCGAA	1 cut(s)	261
Bsp1286I	GDGCHC	4 cut(s)	290, 327, 445, 597
Bsp143I	GATC	3 cut(s)	265, 709, 900
BspACI	CCGC	3 cut(s)	36, 403, 954
BspANI	GGCC	2 cut(s)	790, 947
BspCNI	CTCAG	2 cut(s)	150, 536
BspDI	ATCGAT	2 cut(s)	59, 167
BspPI	GGATC	1 cut(s)	908
BspT104I	TTCGAA	1 cut(s)	261
BspTNI	GGTCTC	1 cut(s)	110
BsrBI	CCGCTC	1 cut(s)	954
BsrDI	GCAATG	1 cut(s)	888
BsrI	ACTGG	3 cut(s)	272, 612, 853
BssECI	CCNNGG	2 cut(s)	375, 546
BssMI	GATC	3 cut(s)	265, 709, 900
BssT1I	CCWWGG	1 cut(s)	546
Bst2UI	CCWGG	1 cut(s)	377
Bst4CI	ACNGT	1 cut(s)	250
Bst6I	CTCTTC	2 cut(s)	5, 123
BstAPI	GCANNNNNTGC	1 cut(s)	887
BstBI	TTCGAA	1 cut(s)	261
BstC8I	GCNNGC	1 cut(s)	313
BstDEI	CTNAG	2 cut(s)	158, 523
BstENI	CCTNNNNNAGG	2 cut(s)	380, 468
BstF5I	GGATG	6 cut(s)	210, 259, 368, 500, 637, 697
BstKTI	GATC	3 cut(s)	268, 712, 903
BstMAI	GTCTC	2 cut(s)	110, 483
BstMBI	GATC	3 cut(s)	265, 709, 900
BstMWI	GCNNNNNNNGC	3 cut(s)	160, 887, 944
BstNI	CCWGG	1 cut(s)	377
BstNSI	RCATGY	1 cut(s)	492
BstSCI	CCNGG	1 cut(s)	375
BstSLI	GKGCMC	1 cut(s)	327
BstV1I	GCAGC	6 cut(s)	101, 166, 665, 845, 865, 935
BstV2I	GAAGAC	1 cut(s)	177
Bsu15I	ATCGAT	2 cut(s)	59, 167
BsuRI	GGCC	2 cut(s)	790, 947
BsuTUI	ATCGAT	2 cut(s)	59, 167
BtsCI	GGATG	6 cut(s)	210, 259, 368, 500, 637, 697
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	1 cut(s)	313
Cfr13I	GGNCC	2 cut(s)	777, 945
ClaI	ATCGAT	2 cut(s)	59, 167
Csp6I	GTAC	1 cut(s)	569
CviAII	CATG	6 cut(s)	305, 489, 581, 805, 839, 935
CviQI	GTAC	1 cut(s)	569
DdeI	CTNAG	2 cut(s)	158, 523
DpnI	GATC	3 cut(s)	267, 711, 902
DpnII	GATC	3 cut(s)	265, 709, 900
DriI	GACNNNNNGTC	1 cut(s)	377
Eam1104I	CTCTTC	2 cut(s)	5, 123
Eam1105I	GACNNNNNGTC	1 cut(s)	377
EarI	CTCTTC	2 cut(s)	5, 123
Eco130I	CCWWGG	1 cut(s)	546
Eco24I	GRGCYC	2 cut(s)	290, 445
Eco31I	GGTCTC	1 cut(s)	110
Eco47I	GGWCC	1 cut(s)	777
Eco57I	CTGAAG	2 cut(s)	782, 783
Eco88I	CYCGRG	2 cut(s)	698, 813
EcoNI	CCTNNNNNAGG	2 cut(s)	380, 468
EcoO109I	RGGNCCY	1 cut(s)	945
EcoRII	CCWGG	1 cut(s)	375
EcoT14I	CCWWGG	1 cut(s)	546
EcoT38I	GRGCYC	2 cut(s)	290, 445
ErhI	CCWWGG	1 cut(s)	546
FaeI	CATG	6 cut(s)	308, 492, 584, 808, 842, 938
FatI	CATG	6 cut(s)	304, 488, 580, 804, 838, 934
FauI	CCCGC	1 cut(s)	410
Fnu4HI	GCNGC	6 cut(s)	90, 155, 654, 834, 879, 924
FokI	GGATG	6 cut(s)	217, 266, 375, 507, 644, 704
FriOI	GRGCYC	2 cut(s)	290, 445
Fsp4HI	GCNGC	6 cut(s)	90, 155, 654, 834, 879, 924
FspBI	CTAG	6 cut(s)	336, 446, 504, 650, 825, 896
GluI	GCNGC	6 cut(s)	90, 155, 654, 834, 879, 924
GsuI	CTGGAG	1 cut(s)	246
HaeIII	GGCC	2 cut(s)	790, 947
HapII	CCGG	1 cut(s)	1003
Hin1II	CATG	6 cut(s)	308, 492, 584, 808, 842, 938
HincII	GTYRAC	1 cut(s)	501
HindII	GTYRAC	1 cut(s)	501
HinfI	GANTC	7 cut(s)	61, 133, 281, 367, 418, 460, 557
HpaII	CCGG	1 cut(s)	1003
HphI	GGTGA	1 cut(s)	968
Hpy166II	GTNNAC	2 cut(s)	501, 716
Hpy188I	TCNGA	2 cut(s)	83, 724
Hpy188III	TCNNGA	7 cut(s)	139, 189, 225, 428, 742, 800, 977
Hpy8I	GTNNAC	2 cut(s)	501, 716
HpyAV	CCTTC	2 cut(s)	474, 913
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4IV	ACGT	1 cut(s)	675
HpyF10VI	GCNNNNNNNGC	3 cut(s)	160, 887, 944
HpyF3I	CTNAG	2 cut(s)	158, 523
HpySE526I	ACGT	1 cut(s)	675
Hsp92II	CATG	6 cut(s)	308, 492, 584, 808, 842, 938
Kzo9I	GATC	3 cut(s)	265, 709, 900
LmnI	GCTCC	3 cut(s)	213, 308, 771
Lsp1109I	GCAGC	6 cut(s)	101, 166, 665, 845, 865, 935
LweI	GCATC	2 cut(s)	78, 577
MaeI	CTAG	6 cut(s)	336, 446, 504, 650, 825, 896
MaeII	ACGT	1 cut(s)	675
MaeIII	GTNAC	2 cut(s)	14, 412
MalI	GATC	3 cut(s)	267, 711, 902
MbiI	CCGCTC	1 cut(s)	954
MboI	GATC	3 cut(s)	265, 709, 900
MboII	GAAGA	5 cut(s)	22, 140, 177, 275, 776
MhlI	GDGCHC	4 cut(s)	290, 327, 445, 597
MluCI	AATT	7 cut(s)	93, 110, 237, 432, 750, 959, 972
MlyI	GAGTC	1 cut(s)	290
MnlI	CCTC	7 cut(s)	77, 153, 160, 353, 448, 532, 936
MseI	TTAA	2 cut(s)	819, 998
MslI	CAYNNNNRTG	4 cut(s)	473, 487, 493, 585
MspA1I	CMGCKG	2 cut(s)	157, 527
MspI	CCGG	1 cut(s)	1003
MspR9I	CCNGG	1 cut(s)	377
MvaI	CCWGG	1 cut(s)	377
MwoI	GCNNNNNNNGC	3 cut(s)	160, 887, 944
NdeII	GATC	3 cut(s)	265, 709, 900
NlaIII	CATG	6 cut(s)	308, 492, 584, 808, 842, 938
NmuCI	GTSAC	1 cut(s)	14
NspI	RCATGY	1 cut(s)	492
NspV	TTCGAA	1 cut(s)	261
PaeR7I	CTCGAG	1 cut(s)	813
PfeI	GAWTC	6 cut(s)	61, 133, 367, 418, 460, 557
PkrI	GCNGC	6 cut(s)	91, 156, 655, 835, 880, 925
PleI	GAGTC	1 cut(s)	289
PpsI	GAGTC	1 cut(s)	289
PshBI	ATTAAT	1 cut(s)	998
Psp6I	CCWGG	1 cut(s)	375
PspGI	CCWGG	1 cut(s)	375
PspPI	GGNCC	2 cut(s)	777, 945
PspXI	VCTCGAGB	1 cut(s)	813
PvuII	CAGCTG	2 cut(s)	157, 527
RsaI	GTAC	1 cut(s)	570
RsaNI	GTAC	1 cut(s)	569
RseI	CAYNNNNRTG	4 cut(s)	473, 487, 493, 585
SaqAI	TTAA	2 cut(s)	819, 998
SatI	GCNGC	6 cut(s)	90, 155, 654, 834, 879, 924
Sau3AI	GATC	3 cut(s)	265, 709, 900
Sau96I	GGNCC	2 cut(s)	777, 945
SchI	GAGTC	1 cut(s)	290
ScrFI	CCNGG	1 cut(s)	377
SduI	GDGCHC	4 cut(s)	290, 327, 445, 597
SfaNI	GCATC	2 cut(s)	78, 577
Sfr274I	CTCGAG	1 cut(s)	813
SfuI	TTCGAA	1 cut(s)	261
SinI	GGWCC	1 cut(s)	777
SlaI	CTCGAG	1 cut(s)	813
SmiMI	CAYNNNNRTG	4 cut(s)	473, 487, 493, 585
SmlI	CTYRAG	4 cut(s)	137, 742, 813, 949
SmoI	CTYRAG	4 cut(s)	137, 742, 813, 949
SpeI	ACTAGT	1 cut(s)	824
Sse9I	AATT	7 cut(s)	93, 110, 237, 432, 750, 959, 972
SsiI	CCGC	3 cut(s)	36, 403, 954
SspMI	CTAG	6 cut(s)	336, 446, 504, 650, 825, 896
StyD4I	CCNGG	1 cut(s)	375
StyI	CCWWGG	1 cut(s)	546
TaaI	ACNGT	1 cut(s)	250
TaiI	ACGT	1 cut(s)	678
TaqI	TCGA	7 cut(s)	59, 167, 261, 284, 370, 597, 814
TasI	AATT	7 cut(s)	93, 110, 237, 432, 750, 959, 972
TfiI	GAWTC	6 cut(s)	61, 133, 367, 418, 460, 557
Tru1I	TTAA	2 cut(s)	819, 998
Tru9I	TTAA	2 cut(s)	819, 998
TscAI	CASTG	1 cut(s)	253
TseFI	GTSAC	1 cut(s)	14
TseI	GCWGC	6 cut(s)	89, 154, 653, 833, 878, 923
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	6 cut(s)	35, 123, 141, 231, 293, 821
TspGWI	ACGGA	2 cut(s)	704, 769
TspRI	CASTG	1 cut(s)	253
VpaK11BI	GGWCC	1 cut(s)	777
VspI	ATTAAT	1 cut(s)	998
XagI	CCTNNNNNAGG	2 cut(s)	380, 468
XapI	RAATTY	2 cut(s)	237, 972
XceI	RCATGY	1 cut(s)	492
XcmI	CCANNNNNNNNNTGG	1 cut(s)	845
XhoI	CTCGAG	1 cut(s)	813
XspI	CTAG	6 cut(s)	336, 446, 504, 650, 825, 896

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.