Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0008655

Physical Location & Seq

Genomic Coordinates Reverse (-)

3891907 .. 3894798

Gene Structure 2892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g05930.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGAGGAGACCAACACAAAAGATCTCCAAAGCGCTTCTGTCAGTCTCACGAAGCCGATTCGCTGCATCGTCAAACTCGGAGGTGCAGCAATTACTTGCAAGAACGAATTAGAGACAATAAATGAAGCAAATCTCAAGACGGTTTCGTCGCAGCTGAGGCAATCAATGGCTACGGGGTCGCCTTCTGGGGAGGTTCTTGGGATGGATTGGAGCAAGCAACCTGGAGAATCAGAAATTTCATCTGCCATACTTGATTTTGAACATCGGCCAGTTGCGGACCCCAGCCCCTTTATAGTTGTTCATGGAGCAGGTTCTTTTGGGCATTTTCAAGCTAGTAAATCGGGCGTTCATAAAGGTGGGTTGTACCAACCCCTTGTAAAGGCTGGTTTTGTTGCCACACGCATCTCCGTTACAAAGCTCAATCTTGAAATTGTTAGAGCGTTAGCCAGAGAGGGTATCCCTTCCATTGGAATGTCTCCATTTTCATGCGGATGGTCAACCCGTGAAAGAAATATAGCTTCAGCTGATTTGTCTGCAGTGGCCAAGGCTATTGAATCTGGTTTGGTACCTGTTTTGCATGGAGATGCTGTGCTCGATGAGTTACTGGACTGTACCATATTGAGTGGAGATGTCATCATTAGTCACCTTGCAGCGCACTTGAAGCCTGATTTTGTTGTTTTTCTCACTGATGTTTTTGGGGTTTATGACCGTCCACCGTCGGTACCAAATGCAGTACTCTTGAGAGAAATCGCTGTGGCTAAAGATGGGAGCTGGTCGATCGTGAGCCCAACACTTGAGAACATCAATAAGCAAGTTGAGACAAAAGCGGCAGCCCATGATACAACAGGCGGAATGCTGACCAAGATATCGGAAGCTGCGACGATTGCAAAACTCGGAATCGATGTGTACATTGTGAAGGCAGCAACAACCCATGCTTTGAGGGCATTGAGTGGAGAATTGAAAGGCAGCATTCCGGATGACTGGCTTGGAACCGCAATCCGGTTTTCGAATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016114 GO:0016740 GO:0016772 GO:0016776 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0102043 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_kinase

Protein Analysis

339

Amino Acids

35.8

Weight (kDa)

5.88

Isoelectric Point (pI)

38.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26640
fragaria_vesca	FvH4_4g30620 FvH4_4g30620 FvH4_4g30620 FvH4_4g30620 FvH4_4g30620
malus_domestica	MD13G1067400.v1.1
prunus_persica	Prupe.1G280800_v2.0.a1 Prupe.1G280800_v2.0.a1
pyrus_communis	pycom13g05930
rosa_chinensis	RchiOBHm_Chr4g0439031
rosa_laevigata	RLG00000006308
rosa_multiflora	Rmu_sc0005887.1_g000014 Rmu_sc0022205.1_g000002
rosa_roxburghii	Rroxscaffold_5G00380030
rosa_rugosa	Rorug04G0315200 Rorug04G0315200
rosa_samantha	Rh4AG365800 Rh4BG377100 Rh4CG391200 Rh4DG371800
rosa_wichuraiana	Rw0G007410 Rw0G016960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	145
Acc36I	ACCTGC	1 cut(s)	299
Acc65I	GGTACC	2 cut(s)	565, 721
AccB1I	GGYRCC	2 cut(s)	565, 721
AccIII	TCCGGA	1 cut(s)	973
AciI	CCGC	5 cut(s)	275, 489, 827, 849, 993
AcoI	YGGCCR	2 cut(s)	266, 540
AcsI	RAATTY	1 cut(s)	234
AcuI	CTGAAG	1 cut(s)	504
AfaI	GTAC	6 cut(s)	365, 567, 613, 723, 735, 908
AfeI	AGCGCT	1 cut(s)	34
AfiI	CCNNNNNNNGG	3 cut(s)	379, 467, 999
AgsI	TTSAA	6 cut(s)	260, 329, 428, 554, 661, 961
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	7 cut(s)	154, 332, 418, 518, 524, 771, 875
AluI	AGCT	7 cut(s)	154, 332, 418, 518, 524, 771, 875
Alw21I	GWGCWC	1 cut(s)	594
Alw26I	GTCTC	5 cut(s)	2, 50, 107, 480, 812
Aor13HI	TCCGGA	1 cut(s)	973
Aor51HI	AGCGCT	1 cut(s)	34
AoxI	GGCC	2 cut(s)	266, 540
ApeKI	GCWGC	8 cut(s)	63, 86, 151, 650, 830, 875, 920, 966
ApoI	RAATTY	1 cut(s)	234
Asp718I	GGTACC	2 cut(s)	565, 721
AspLEI	GCGC	2 cut(s)	35, 655
AspS9I	GGNCC	1 cut(s)	277
AsuHPI	GGTGA	1 cut(s)	635
AsuII	TTCGAA	1 cut(s)	1007
AvaII	GGWCC	1 cut(s)	277
BalI	TGGCCA	1 cut(s)	542
BanI	GGYRCC	2 cut(s)	565, 721
BanII	GRGCYC	1 cut(s)	788
Bbv12I	GWGCWC	1 cut(s)	594
BbvCI	CCTCAGC	1 cut(s)	155
BbvI	GCAGC	8 cut(s)	50, 98, 163, 662, 842, 862, 932, 978
BccI	CCATC	3 cut(s)	196, 486, 758
BciT130I	CCWGG	1 cut(s)	222
BciVI	GTATCC	1 cut(s)	467
BcoDI	GTCTC	5 cut(s)	2, 50, 107, 480, 812
BfaI	CTAG	1 cut(s)	333
BfmI	CTRYAG	1 cut(s)	534
BfoI	RGCGCY	1 cut(s)	36
BfuAI	ACCTGC	1 cut(s)	299
BfuI	GTATCC	1 cut(s)	467
BglII	AGATCT	1 cut(s)	22
BisI	GCNGC	9 cut(s)	64, 87, 152, 651, 828, 831, 876, 921, 967
BlsI	GCNGC	9 cut(s)	65, 88, 153, 652, 829, 832, 877, 922, 968
BmcAI	AGTACT	1 cut(s)	735
Bme1390I	CCNGG	1 cut(s)	222
Bme18I	GGWCC	1 cut(s)	277
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	4 cut(s)	279, 567, 723, 991
BmrFI	CCNGG	1 cut(s)	222
BmsI	GCATC	3 cut(s)	75, 411, 574
BpmI	CTGGAG	1 cut(s)	243
Bpu10I	CCTNAGC	1 cut(s)	155
Bpu14I	TTCGAA	1 cut(s)	1007
BpuEI	CTTGAG	3 cut(s)	119, 760, 815
Bsa29I	ATCGAT	1 cut(s)	900
BsaI	GGTCTC	1 cut(s)	2
BsaJI	CCNNGG	1 cut(s)	543
BsaWI	WCCGGW	2 cut(s)	973, 999
BsaXI	ACNNNNNCTCC	2 cut(s)	573, 603
Bsc4I	CCNNNNNNNGG	3 cut(s)	379, 467, 999
Bse1I	ACTGG	3 cut(s)	269, 609, 986
BseAI	TCCGGA	1 cut(s)	973
BseBI	CCWGG	1 cut(s)	222
BseCI	ATCGAT	1 cut(s)	900
BseDI	CCNNGG	1 cut(s)	543
BseGI	GGATG	3 cut(s)	207, 497, 982
BseLI	CCNNNNNNNGG	3 cut(s)	379, 467, 999
BseMII	CTCAG	1 cut(s)	146
BseNI	ACTGG	3 cut(s)	269, 609, 986
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	8 cut(s)	50, 98, 163, 662, 842, 862, 932, 978
BseYI	CCCAGC	1 cut(s)	281
BsgI	GTGCAG	1 cut(s)	105
Bsh1285I	CGRYCG	1 cut(s)	780
BshFI	GGCC	2 cut(s)	268, 542
BshNI	GGYRCC	2 cut(s)	565, 721
BshVI	ATCGAT	1 cut(s)	900
BsiEI	CGRYCG	1 cut(s)	780
BsiHKAI	GWGCWC	1 cut(s)	594
BsiSI	CCGG	2 cut(s)	974, 1000
BslI	CCNNNNNNNGG	3 cut(s)	379, 467, 999
BsmAI	GTCTC	5 cut(s)	2, 50, 107, 480, 812
BsmI	GAATGC	2 cut(s)	858, 969
BsnI	GGCC	2 cut(s)	268, 542
Bso31I	GGTCTC	1 cut(s)	2
Bsp119I	TTCGAA	1 cut(s)	1007
Bsp1286I	GDGCHC	2 cut(s)	594, 788
Bsp13I	TCCGGA	1 cut(s)	973
Bsp1407I	TGTACA	1 cut(s)	906
Bsp143I	GATC	2 cut(s)	22, 777
BspACI	CCGC	5 cut(s)	275, 489, 827, 849, 993
BspANI	GGCC	2 cut(s)	268, 542
BspCNI	CTCAG	1 cut(s)	147
BspDI	ATCGAT	1 cut(s)	900
BspEI	TCCGGA	1 cut(s)	973
BspLI	GGNNCC	4 cut(s)	279, 567, 723, 991
BspMAI	CTGCAG	1 cut(s)	538
BspMI	ACCTGC	1 cut(s)	299
BspT104I	TTCGAA	1 cut(s)	1007
BspT107I	GGYRCC	2 cut(s)	565, 721
BspTNI	GGTCTC	1 cut(s)	2
BsrGI	TGTACA	1 cut(s)	906
BsrI	ACTGG	3 cut(s)	269, 609, 986
BssECI	CCNNGG	1 cut(s)	543
BssMI	GATC	2 cut(s)	22, 777
BssT1I	CCWWGG	1 cut(s)	543
Bst2UI	CCWGG	1 cut(s)	222
Bst4CI	ACNGT	4 cut(s)	142, 611, 710, 717
BstAUI	TGTACA	1 cut(s)	906
BstBI	TTCGAA	1 cut(s)	1007
BstC8I	GCNNGC	1 cut(s)	215
BstDEI	CTNAG	1 cut(s)	155
BstENI	CCTNNNNNAGG	1 cut(s)	377
BstF5I	GGATG	3 cut(s)	207, 497, 982
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	2 cut(s)	35, 655
BstKTI	GATC	2 cut(s)	25, 780
BstMAI	GTCTC	5 cut(s)	2, 50, 107, 480, 812
BstMBI	GATC	2 cut(s)	22, 777
BstMCI	CGRYCG	1 cut(s)	780
BstMWI	GCNNNNNNNGC	4 cut(s)	157, 661, 884, 941
BstNI	CCWGG	1 cut(s)	222
BstSCI	CCNGG	1 cut(s)	220
BstSFI	CTRYAG	1 cut(s)	534
BstV1I	GCAGC	8 cut(s)	50, 98, 163, 662, 842, 862, 932, 978
BstX2I	RGATCY	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	22
Bsu15I	ATCGAT	1 cut(s)	900
BsuI	GTATCC	1 cut(s)	467
BsuRI	GGCC	2 cut(s)	268, 542
BsuTUI	ATCGAT	1 cut(s)	900
BtsCI	GGATG	3 cut(s)	207, 497, 982
BtsI	GCAGTG	1 cut(s)	543
BtsIMutI	CAGTG	2 cut(s)	543, 684
BveI	ACCTGC	1 cut(s)	299
Cac8I	GCNNGC	1 cut(s)	215
CfoI	GCGC	2 cut(s)	35, 655
Cfr13I	GGNCC	1 cut(s)	277
ClaI	ATCGAT	1 cut(s)	900
Csp6I	GTAC	6 cut(s)	364, 566, 612, 722, 734, 907
CviAII	CATG	5 cut(s)	302, 486, 578, 836, 932
CviQI	GTAC	6 cut(s)	364, 566, 612, 722, 734, 907
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	2 cut(s)	24, 779
DpnII	GATC	2 cut(s)	22, 777
DrdI	GACNNNNNNGTC	1 cut(s)	145
DseDI	GACNNNNNNGTC	1 cut(s)	145
EaeI	YGGCCR	2 cut(s)	266, 540
EciI	GGCGGA	1 cut(s)	864
Eco130I	CCWWGG	1 cut(s)	543
Eco24I	GRGCYC	1 cut(s)	788
Eco31I	GGTCTC	1 cut(s)	2
Eco32I	GATATC	1 cut(s)	867
Eco47I	GGWCC	1 cut(s)	277
Eco47III	AGCGCT	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	504
EcoNI	CCTNNNNNAGG	1 cut(s)	377
EcoRII	CCWGG	1 cut(s)	220
EcoRV	GATATC	1 cut(s)	867
EcoT14I	CCWWGG	1 cut(s)	543
EcoT38I	GRGCYC	1 cut(s)	788
ErhI	CCWWGG	1 cut(s)	543
FaeI	CATG	5 cut(s)	305, 489, 581, 839, 935
FatI	CATG	5 cut(s)	301, 485, 577, 835, 931
Fnu4HI	GCNGC	9 cut(s)	64, 87, 152, 651, 828, 831, 876, 921, 967
FokI	GGATG	3 cut(s)	214, 504, 989
FriOI	GRGCYC	1 cut(s)	788
Fsp4HI	GCNGC	9 cut(s)	64, 87, 152, 651, 828, 831, 876, 921, 967
FspBI	CTAG	1 cut(s)	333
GlaI	GCGC	2 cut(s)	34, 654
GluI	GCNGC	9 cut(s)	64, 87, 152, 651, 828, 831, 876, 921, 967
GsaI	CCCAGC	1 cut(s)	285
GsuI	CTGGAG	1 cut(s)	243
HaeII	RGCGCY	1 cut(s)	36
HaeIII	GGCC	2 cut(s)	268, 542
HapII	CCGG	2 cut(s)	974, 1000
HhaI	GCGC	2 cut(s)	35, 655
Hin1II	CATG	5 cut(s)	305, 489, 581, 839, 935
Hin6I	GCGC	2 cut(s)	33, 653
HinP1I	GCGC	2 cut(s)	33, 653
HincII	GTYRAC	1 cut(s)	498
HindII	GTYRAC	1 cut(s)	498
HinfI	GANTC	4 cut(s)	58, 227, 554, 897
HpaII	CCGG	2 cut(s)	974, 1000
HphI	GGTGA	1 cut(s)	635
Hpy166II	GTNNAC	3 cut(s)	498, 713, 907
Hpy188I	TCNGA	4 cut(s)	80, 232, 871, 896
Hpy188III	TCNNGA	6 cut(s)	49, 136, 425, 739, 781, 974
Hpy8I	GTNNAC	3 cut(s)	498, 713, 907
Hpy99I	CGWCG	3 cut(s)	151, 721, 883
HpyAV	CCTTC	3 cut(s)	192, 471, 910
HpyCH4III	ACNGT	4 cut(s)	142, 611, 710, 717
HpyCH4V	TGCA	8 cut(s)	66, 86, 99, 536, 577, 650, 731, 887
HpyF10VI	GCNNNNNNNGC	4 cut(s)	157, 661, 884, 941
HpyF3I	CTNAG	1 cut(s)	155
Hsp92II	CATG	5 cut(s)	305, 489, 581, 839, 935
HspAI	GCGC	2 cut(s)	33, 653
Kpn2I	TCCGGA	1 cut(s)	973
KpnI	GGTACC	2 cut(s)	569, 725
Kzo9I	GATC	2 cut(s)	22, 777
LmnI	GCTCC	3 cut(s)	210, 305, 768
Lsp1109I	GCAGC	8 cut(s)	50, 98, 163, 662, 842, 862, 932, 978
LweI	GCATC	3 cut(s)	75, 411, 574
MaeI	CTAG	1 cut(s)	333
MaeIII	GTNAC	3 cut(s)	409, 600, 641
MalI	GATC	2 cut(s)	24, 779
MboI	GATC	2 cut(s)	22, 777
MflI	RGATCY	1 cut(s)	22
MhlI	GDGCHC	2 cut(s)	594, 788
MlsI	TGGCCA	1 cut(s)	542
MluCI	AATT	5 cut(s)	90, 107, 234, 429, 956
MluNI	TGGCCA	1 cut(s)	542
MnlI	CCTC	5 cut(s)	74, 150, 184, 445, 933
Mox20I	TGGCCA	1 cut(s)	542
MroI	TCCGGA	1 cut(s)	973
MscI	TGGCCA	1 cut(s)	542
MslI	CAYNNNNRTG	5 cut(s)	354, 470, 484, 490, 582
Msp20I	TGGCCA	1 cut(s)	542
MspA1I	CMGCKG	2 cut(s)	154, 524
MspI	CCGG	2 cut(s)	974, 1000
MspR9I	CCNGG	1 cut(s)	222
Mva1269I	GAATGC	2 cut(s)	858, 969
MvaI	CCWGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	4 cut(s)	157, 661, 884, 941
NdeII	GATC	2 cut(s)	22, 777
NlaIII	CATG	5 cut(s)	305, 489, 581, 839, 935
NlaIV	GGNNCC	4 cut(s)	279, 567, 723, 991
NmuCI	GTSAC	1 cut(s)	641
NspV	TTCGAA	1 cut(s)	1007
PcsI	WCGNNNNNNNCGW	1 cut(s)	875
PctI	GAATGC	2 cut(s)	858, 969
PfeI	GAWTC	4 cut(s)	58, 227, 554, 897
PkrI	GCNGC	9 cut(s)	65, 88, 153, 652, 829, 832, 877, 922, 968
Ple19I	CGATCG	1 cut(s)	780
Psp6I	CCWGG	1 cut(s)	220
PspFI	CCCAGC	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	220
PspN4I	GGNNCC	4 cut(s)	279, 567, 723, 991
PspPI	GGNCC	1 cut(s)	277
PstI	CTGCAG	1 cut(s)	538
PsuI	RGATCY	1 cut(s)	22
PvuI	CGATCG	1 cut(s)	780
PvuII	CAGCTG	2 cut(s)	154, 524
RsaI	GTAC	6 cut(s)	365, 567, 613, 723, 735, 908
RsaNI	GTAC	6 cut(s)	364, 566, 612, 722, 734, 907
RseI	CAYNNNNRTG	5 cut(s)	354, 470, 484, 490, 582
SatI	GCNGC	9 cut(s)	64, 87, 152, 651, 828, 831, 876, 921, 967
Sau3AI	GATC	2 cut(s)	22, 777
Sau96I	GGNCC	1 cut(s)	277
ScaI	AGTACT	1 cut(s)	735
ScrFI	CCNGG	1 cut(s)	222
SduI	GDGCHC	2 cut(s)	594, 788
SfaNI	GCATC	3 cut(s)	75, 411, 574
SfcI	CTRYAG	1 cut(s)	534
SfuI	TTCGAA	1 cut(s)	1007
SinI	GGWCC	1 cut(s)	277
SmiMI	CAYNNNNRTG	5 cut(s)	354, 470, 484, 490, 582
SmlI	CTYRAG	3 cut(s)	134, 739, 794
SmoI	CTYRAG	3 cut(s)	134, 739, 794
Sse9I	AATT	5 cut(s)	90, 107, 234, 429, 956
SsiI	CCGC	5 cut(s)	275, 489, 827, 849, 993
SspMI	CTAG	1 cut(s)	333
StyD4I	CCNGG	1 cut(s)	220
StyI	CCWWGG	1 cut(s)	543
TaaI	ACNGT	4 cut(s)	142, 611, 710, 717
TaqI	TCGA	4 cut(s)	594, 776, 900, 1007
TasI	AATT	5 cut(s)	90, 107, 234, 429, 956
TatI	WGTACW	2 cut(s)	733, 906
TauI	GCSGC	1 cut(s)	830
TfiI	GAWTC	4 cut(s)	58, 227, 554, 897
TscAI	CASTG	2 cut(s)	543, 691
TseFI	GTSAC	1 cut(s)	641
TseI	GCWGC	8 cut(s)	63, 86, 151, 650, 830, 875, 920, 966
Tsp45I	GTSAC	1 cut(s)	641
TspDTI	ATGAA	5 cut(s)	138, 228, 290, 338, 474
TspGWI	ACGGA	1 cut(s)	397
TspRI	CASTG	2 cut(s)	543, 691
VpaK11BI	GGWCC	1 cut(s)	277
XagI	CCTNNNNNAGG	1 cut(s)	377
XapI	RAATTY	1 cut(s)	234
XspI	CTAG	1 cut(s)	333
ZrmI	AGTACT	1 cut(s)	735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.