Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008086

Physical Location & Seq

Genomic Coordinates Reverse (-)

32588535 .. 32592060

Gene Structure 3526 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g35220.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGAGTGTGCCGGGAAGCGACTGGGGACTCGGTGCACTGGCCCACCTACACGGCGGTGTGCTCGTTGCGAAGCCGTTGCTTATTGCTCTGTATCTCACCAGATTTTGCATTGGCGCGATCATAAAGAGGAGTGCGAAAGGTTAGAAGAACAAATGGAGCAGATAGATATCTTGAACGAGTTTCCTTTCACTTTTTCTGAAGAAGCTACAGTTCAGGTTTGTGAAAAACAGGAGACAAGGTGTTCATTCTTGACTAAAAGAGGGGTCCATCAAACGGGAATGTGGTTATATGAATGTTGTTGTGGGGAACCGGTTATGTCGTTTGATTGTTCAAGGCTAGATAACACTTGGGATCTCGGAAGCACCCTCTGCCCATGTAATGAACCTGCTTTCACACTTTCAAAGCATCTAATCAGTTGGAAGGAGTACTATGATTGGAGATCCATCCCACTGCATTCACCTGTTGCTTTACTTCTACACTGGCCTCTTACAATTTATTATGCCACTCAACTGACTCAAGTAGCTGATTCAGGAAGCTTGACTTCTGGAATCAATGGAAAATTGCACATACATTATCTTGGACCCGAGAAAGAGCTTCTTCAGCTTTATGTCTTCTCGGAGCTACACGCGCTTTTTCCTCACATGGATGTGCATATAGATCTTATTGGACCTTCAATTCCACAACATAGGGATGGTGAGAGGATCAAGCTAAGCAATTATGCTCATTGCCTCGGAACAGATTGCGTTTGTAAATCTTCAGTTGAGAGTGGTGTACATACTAATGACACTTCAGCTGTTACATTGCAACTTTGGAGGGGACTCTATCATGAACGTTACACAGATATAGTTAAGGATTCATATCCTCATATAGTAATTGCTCCAAATGCCGGCATTGCTGCTTATTCAAGTTGGTTACCAACAATTGAGCTGATAAAGGATATGAATATACCAGCAGTTTTTTCCGATTACTGTGAAGAAGCTTGCCATCTCGGAGCTCGTTGCATTAGCAGTGTCACTGGCTTTCCTCCTAACATTCCGATTCAATTAAATCCATTCAGACAACCGATAGTGGTAGAAAACAATGCTCTCTTCATCCCTTGCTACTCCAATTGCTTCCTCTACGGAATGTCCAAATGGTCTGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007276 GO:0007281 GO:0007283 GO:0007286 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0019899 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0042826 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044703 GO:0045892 GO:0045934 GO:0048232 GO:0048468 GO:0048515 GO:0048519 GO:0048523 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-MYND

Protein Analysis

382

Amino Acids

43.26

Weight (kDa)

5.74

Isoelectric Point (pI)

51.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-MYND	PF01753	11 - 45	1.1e-08	MYND finger
MSS51_C	PF20179	162 - 357	7.3e-34	MSS51 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70150
fragaria_vesca	FvH4_4g35220 FvH4_4g35220 FvH4_4g35220 FvH4_4g35220 FvH4_4g35220 FvH4_4g35220
malus_domestica	MD16G1084700.v1.1
prunus_persica	Prupe.1G261400_v2.0.a1 Prupe.1G261400_v2.0.a1 Prupe.1G261400_v2.0.a1
pyrus_communis	pycom13g07380
rosa_chinensis	RchiOBHm_Chr4g0444821
rosa_laevigata	RLG00000005799
rosa_multiflora	Rmu_sc0007130.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385310
rosa_rugosa	Rorug04G0355300
rosa_samantha	Rh4AG416700 Rh4BG428500 Rh4BG428600 Rh4CG443200 Rh4DG424200 Rh4DG424300
rosa_wichuraiana	Rw4G035720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	394
AccII	CGCG	2 cut(s)	117, 629
AciI	CCGC	1 cut(s)	55
AclI	AACGTT	1 cut(s)	832
AclWI	GGATC	3 cut(s)	360, 435, 710
AcuI	CTGAAG	4 cut(s)	219, 584, 741, 774
AfaI	GTAC	2 cut(s)	428, 774
AfiI	CCNNNNNNNGG	2 cut(s)	274, 887
AgeI	ACCGGT	1 cut(s)	310
AgsI	TTSAA	6 cut(s)	175, 333, 402, 675, 906, 1043
AleI	CACNNNNGTG	1 cut(s)	55
Alw21I	GWGCWC	3 cut(s)	38, 64, 997
Alw26I	GTCTC	1 cut(s)	227
Alw44I	GTGCAC	1 cut(s)	34
AlwI	GGATC	3 cut(s)	360, 435, 710
Ama87I	CYCGRG	1 cut(s)	584
AoxI	GGCC	2 cut(s)	40, 482
ApaLI	GTGCAC	1 cut(s)	34
ApeKI	GCWGC	1 cut(s)	896
AsiGI	ACCGGT	1 cut(s)	310
AspLEI	GCGC	2 cut(s)	117, 631
AspS9I	GGNCC	4 cut(s)	41, 265, 581, 668
AsuC2I	CCSGG	1 cut(s)	13
AsuHPI	GGTGA	3 cut(s)	89, 450, 707
AvaI	CYCGRG	1 cut(s)	584
AvaII	GGWCC	3 cut(s)	265, 581, 668
BaeGI	GKGCMC	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	997
BbsI	GAAGAC	1 cut(s)	604
Bbv12I	GWGCWC	3 cut(s)	38, 64, 997
BbvI	GCAGC	1 cut(s)	883
BccI	CCATC	4 cut(s)	276, 452, 686, 993
BceAI	ACGGC	2 cut(s)	59, 68
BcgI	CGANNNNNNTGC	2 cut(s)	59, 93
BcnI	CCSGG	1 cut(s)	13
BcoDI	GTCTC	1 cut(s)	227
BfaI	CTAG	1 cut(s)	338
BfmI	CTRYAG	1 cut(s)	207
BfuAI	ACCTGC	1 cut(s)	394
BglII	AGATCT	1 cut(s)	658
BisI	GCNGC	1 cut(s)	897
BlpI	GCTNAGC	1 cut(s)	710
BlsI	GCNGC	1 cut(s)	898
BmcAI	AGTACT	1 cut(s)	428
Bme1390I	CCNGG	1 cut(s)	13
Bme18I	GGWCC	3 cut(s)	265, 581, 668
BmeT110I	CYCGRG	1 cut(s)	584
BmgT120I	GGNCC	4 cut(s)	41, 265, 581, 668
BmiI	GGNNCC	3 cut(s)	266, 309, 583
BmrFI	CCNGG	1 cut(s)	13
BmrI	ACTGGG	1 cut(s)	32
BmsI	GCATC	1 cut(s)	415
BmuI	ACTGGG	1 cut(s)	32
BpiI	GAAGAC	1 cut(s)	604
Bpu1102I	GCTNAGC	1 cut(s)	710
BpuEI	CTTGAG	1 cut(s)	501
BpuMI	CCSGG	1 cut(s)	13
BsaBI	GATNNNNATC	2 cut(s)	167, 858
BsaJI	CCNNGG	1 cut(s)	730
BsaWI	WCCGGW	1 cut(s)	310
BsaXI	ACNNNNNCTCC	2 cut(s)	224, 254
Bsc4I	CCNNNNNNNGG	2 cut(s)	274, 887
Bse118I	RCCGGY	2 cut(s)	310, 887
Bse1I	ACTGG	4 cut(s)	27, 43, 485, 1021
Bse3DI	GCAATG	3 cut(s)	724, 800, 891
Bse8I	GATNNNNATC	2 cut(s)	167, 858
BseDI	CCNNGG	1 cut(s)	730
BseGI	GGATG	4 cut(s)	444, 652, 697, 1092
BseJI	GATNNNNATC	2 cut(s)	167, 858
BseLI	CCNNNNNNNGG	2 cut(s)	274, 887
BseMI	GCAATG	3 cut(s)	724, 800, 891
BseNI	ACTGG	4 cut(s)	27, 43, 485, 1021
BseRI	GAGGAG	1 cut(s)	143
BseSI	GKGCMC	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	883
Bsh1236I	CGCG	2 cut(s)	117, 629
BshFI	GGCC	2 cut(s)	42, 484
BshTI	ACCGGT	1 cut(s)	310
BsiHKAI	GWGCWC	3 cut(s)	38, 64, 997
BsiHKCI	CYCGRG	1 cut(s)	584
BsiSI	CCGG	3 cut(s)	12, 311, 888
BslFI	GGGAC	2 cut(s)	40, 831
BslI	CCNNNNNNNGG	2 cut(s)	274, 887
BsmAI	GTCTC	1 cut(s)	227
BsmFI	GGGAC	2 cut(s)	40, 831
BsmI	GAATGC	1 cut(s)	454
BsnI	GGCC	2 cut(s)	42, 484
BsoBI	CYCGRG	1 cut(s)	584
Bsp1286I	GDGCHC	3 cut(s)	38, 64, 997
Bsp1407I	TGTACA	1 cut(s)	772
Bsp143I	GATC	5 cut(s)	118, 352, 440, 658, 702
Bsp1720I	GCTNAGC	1 cut(s)	710
BspACI	CCGC	1 cut(s)	55
BspANI	GGCC	2 cut(s)	42, 484
BspFNI	CGCG	2 cut(s)	117, 629
BspHI	TCATGA	1 cut(s)	826
BspLI	GGNNCC	3 cut(s)	266, 309, 583
BspMI	ACCTGC	1 cut(s)	394
BspPI	GGATC	3 cut(s)	360, 435, 710
BsrDI	GCAATG	3 cut(s)	724, 800, 891
BsrFI	RCCGGY	2 cut(s)	310, 887
BsrGI	TGTACA	1 cut(s)	772
BsrI	ACTGG	4 cut(s)	27, 43, 485, 1021
BssAI	RCCGGY	2 cut(s)	310, 887
BssECI	CCNNGG	1 cut(s)	730
BssMI	GATC	5 cut(s)	118, 352, 440, 658, 702
Bst4CI	ACNGT	2 cut(s)	211, 971
Bst6I	CTCTTC	1 cut(s)	1094
BstAPI	GCANNNNNTGC	1 cut(s)	369
BstAUI	TGTACA	1 cut(s)	772
BstC8I	GCNNGC	2 cut(s)	889, 982
BstDEI	CTNAG	1 cut(s)	710
BstEII	GGTNACC	1 cut(s)	912
BstF5I	GGATG	4 cut(s)	444, 652, 697, 1092
BstFNI	CGCG	2 cut(s)	117, 629
BstHHI	GCGC	2 cut(s)	117, 631
BstKTI	GATC	5 cut(s)	121, 355, 443, 661, 705
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	5 cut(s)	118, 352, 440, 658, 702
BstMWI	GCNNNNNNNGC	5 cut(s)	369, 601, 628, 884, 893
BstPI	GGTNACC	1 cut(s)	912
BstSCI	CCNGG	1 cut(s)	11
BstSFI	CTRYAG	1 cut(s)	207
BstSLI	GKGCMC	1 cut(s)	38
BstUI	CGCG	2 cut(s)	117, 629
BstV1I	GCAGC	1 cut(s)	883
BstV2I	GAAGAC	1 cut(s)	604
BstX2I	RGATCY	3 cut(s)	352, 440, 658
BstYI	RGATCY	3 cut(s)	352, 440, 658
BsuRI	GGCC	2 cut(s)	42, 484
BtsCI	GGATG	4 cut(s)	444, 652, 697, 1092
BtsI	GCAGTG	2 cut(s)	449, 1015
BtsIMutI	CAGTG	5 cut(s)	36, 449, 478, 1014, 1015
BveI	ACCTGC	1 cut(s)	394
Cac8I	GCNNGC	2 cut(s)	889, 982
CciI	TCATGA	1 cut(s)	826
CfoI	GCGC	2 cut(s)	117, 631
Cfr10I	RCCGGY	2 cut(s)	310, 887
Cfr13I	GGNCC	4 cut(s)	41, 265, 581, 668
Csp6I	GTAC	2 cut(s)	427, 773
CspAI	ACCGGT	1 cut(s)	310
CviAII	CATG	3 cut(s)	375, 643, 827
CviQI	GTAC	2 cut(s)	427, 773
DdeI	CTNAG	1 cut(s)	710
DpnI	GATC	5 cut(s)	120, 354, 442, 660, 704
DpnII	GATC	5 cut(s)	118, 352, 440, 658, 702
Eam1104I	CTCTTC	1 cut(s)	1094
EarI	CTCTTC	1 cut(s)	1094
Ecl136II	GAGCTC	1 cut(s)	995
Eco24I	GRGCYC	1 cut(s)	997
Eco32I	GATATC	1 cut(s)	169
Eco47I	GGWCC	3 cut(s)	265, 581, 668
Eco53kI	GAGCTC	1 cut(s)	995
Eco57I	CTGAAG	4 cut(s)	219, 584, 741, 774
Eco88I	CYCGRG	1 cut(s)	584
Eco91I	GGTNACC	1 cut(s)	912
EcoICRI	GAGCTC	1 cut(s)	995
EcoO65I	GGTNACC	1 cut(s)	912
EcoRV	GATATC	1 cut(s)	169
EcoT38I	GRGCYC	1 cut(s)	997
FaeI	CATG	3 cut(s)	378, 646, 830
FalI	AAGNNNNNCTT	4 cut(s)	526, 558, 582, 614
FaqI	GGGAC	2 cut(s)	40, 831
FatI	CATG	3 cut(s)	374, 642, 826
Fnu4HI	GCNGC	1 cut(s)	897
FokI	GGATG	4 cut(s)	431, 659, 704, 1079
FriOI	GRGCYC	1 cut(s)	997
Fsp4HI	GCNGC	1 cut(s)	897
FspBI	CTAG	1 cut(s)	338
GlaI	GCGC	2 cut(s)	116, 630
GluI	GCNGC	1 cut(s)	897
HaeIII	GGCC	2 cut(s)	42, 484
HapII	CCGG	3 cut(s)	12, 311, 888
HhaI	GCGC	2 cut(s)	117, 631
Hin1II	CATG	3 cut(s)	378, 646, 830
Hin6I	GCGC	2 cut(s)	115, 629
HinP1I	GCGC	2 cut(s)	115, 629
HindIII	AAGCTT	2 cut(s)	535, 978
HinfI	GANTC	7 cut(s)	28, 514, 527, 549, 819, 854, 1039
HpaII	CCGG	3 cut(s)	12, 311, 888
HphI	GGTGA	3 cut(s)	89, 450, 707
Hpy166II	GTNNAC	2 cut(s)	36, 773
Hpy188I	TCNGA	8 cut(s)	199, 359, 619, 734, 964, 992, 1038, 1058
Hpy188III	TCNNGA	5 cut(s)	172, 250, 531, 546, 827
Hpy8I	GTNNAC	2 cut(s)	36, 773
HpyAV	CCTTC	2 cut(s)	415, 681
HpyCH4III	ACNGT	2 cut(s)	211, 971
HpyCH4IV	ACGT	1 cut(s)	832
HpyCH4V	TGCA	7 cut(s)	36, 109, 454, 565, 652, 805, 1002
HpyF10VI	GCNNNNNNNGC	5 cut(s)	369, 601, 628, 884, 893
HpyF3I	CTNAG	1 cut(s)	710
HpySE526I	ACGT	1 cut(s)	832
Hsp92II	CATG	3 cut(s)	378, 646, 830
HspAI	GCGC	2 cut(s)	115, 629
KroI	GCCGGC	1 cut(s)	887
KroNI	GCCGGC	1 cut(s)	889
Kzo9I	GATC	5 cut(s)	118, 352, 440, 658, 702
LmnI	GCTCC	4 cut(s)	157, 619, 883, 992
Lsp1109I	GCAGC	1 cut(s)	883
LweI	GCATC	1 cut(s)	415
MaeI	CTAG	1 cut(s)	338
MaeII	ACGT	1 cut(s)	832
MaeIII	GTNAC	4 cut(s)	796, 833, 912, 1012
MalI	GATC	5 cut(s)	120, 354, 442, 660, 704
MboI	GATC	5 cut(s)	118, 352, 440, 658, 702
MboII	GAAGA	7 cut(s)	158, 212, 590, 604, 747, 986, 1081
MfeI	CAATTG	2 cut(s)	921, 1108
MflI	RGATCY	3 cut(s)	352, 440, 658
MhlI	GDGCHC	3 cut(s)	38, 64, 997
MluCI	AATT	8 cut(s)	492, 560, 675, 715, 873, 921, 1043, 1108
MlyI	GAGTC	3 cut(s)	22, 508, 813
MmeI	TCCRAC	1 cut(s)	398
MroNI	GCCGGC	1 cut(s)	887
MseI	TTAA	2 cut(s)	849, 1046
MslI	CAYNNNNRTG	5 cut(s)	55, 645, 647, 690, 780
MspA1I	CMGCKG	1 cut(s)	794
MspI	CCGG	3 cut(s)	12, 311, 888
MspR9I	CCNGG	1 cut(s)	13
MunI	CAATTG	2 cut(s)	921, 1108
Mva1269I	GAATGC	1 cut(s)	454
MvnI	CGCG	2 cut(s)	117, 629
MwoI	GCNNNNNNNGC	5 cut(s)	369, 601, 628, 884, 893
NaeI	GCCGGC	1 cut(s)	889
NciI	CCSGG	1 cut(s)	13
NdeII	GATC	5 cut(s)	118, 352, 440, 658, 702
NgoMIV	GCCGGC	1 cut(s)	887
NlaIII	CATG	3 cut(s)	378, 646, 830
NlaIV	GGNNCC	3 cut(s)	266, 309, 583
NmuCI	GTSAC	1 cut(s)	1012
OliI	CACNNNNGTG	1 cut(s)	55
PagI	TCATGA	1 cut(s)	826
PctI	GAATGC	1 cut(s)	454
PdiI	GCCGGC	1 cut(s)	889
PfeI	GAWTC	4 cut(s)	527, 549, 854, 1039
PinAI	ACCGGT	1 cut(s)	310
PkrI	GCNGC	1 cut(s)	898
PleI	GAGTC	3 cut(s)	22, 508, 813
PpsI	GAGTC	3 cut(s)	22, 508, 813
Psp124BI	GAGCTC	1 cut(s)	997
Psp1406I	AACGTT	1 cut(s)	832
PspEI	GGTNACC	1 cut(s)	912
PspN4I	GGNNCC	3 cut(s)	266, 309, 583
PspPI	GGNCC	4 cut(s)	41, 265, 581, 668
PsuI	RGATCY	3 cut(s)	352, 440, 658
PvuII	CAGCTG	1 cut(s)	794
RsaI	GTAC	2 cut(s)	428, 774
RsaNI	GTAC	2 cut(s)	427, 773
RseI	CAYNNNNRTG	5 cut(s)	55, 645, 647, 690, 780
SacI	GAGCTC	1 cut(s)	997
SaqAI	TTAA	2 cut(s)	849, 1046
SatI	GCNGC	1 cut(s)	897
Sau3AI	GATC	5 cut(s)	118, 352, 440, 658, 702
Sau96I	GGNCC	4 cut(s)	41, 265, 581, 668
ScaI	AGTACT	1 cut(s)	428
SchI	GAGTC	3 cut(s)	22, 508, 813
ScrFI	CCNGG	1 cut(s)	13
SduI	GDGCHC	3 cut(s)	38, 64, 997
SfaNI	GCATC	1 cut(s)	415
SfcI	CTRYAG	1 cut(s)	207
SinI	GGWCC	3 cut(s)	265, 581, 668
SmiMI	CAYNNNNRTG	5 cut(s)	55, 645, 647, 690, 780
SmlI	CTYRAG	1 cut(s)	516
SmoI	CTYRAG	1 cut(s)	516
Sse9I	AATT	8 cut(s)	492, 560, 675, 715, 873, 921, 1043, 1108
SsiI	CCGC	1 cut(s)	55
SspMI	CTAG	1 cut(s)	338
SstI	GAGCTC	1 cut(s)	997
StyD4I	CCNGG	1 cut(s)	11
TaaI	ACNGT	2 cut(s)	211, 971
TaiI	ACGT	1 cut(s)	835
TasI	AATT	8 cut(s)	492, 560, 675, 715, 873, 921, 1043, 1108
TatI	WGTACW	2 cut(s)	426, 772
TfiI	GAWTC	4 cut(s)	527, 549, 854, 1039
Tru1I	TTAA	2 cut(s)	849, 1046
Tru9I	TTAA	2 cut(s)	849, 1046
TscAI	CASTG	5 cut(s)	43, 456, 485, 1015, 1021
TseFI	GTSAC	1 cut(s)	1012
TseI	GCWGC	1 cut(s)	896
Tsp45I	GTSAC	1 cut(s)	1012
TspDTI	ATGAA	7 cut(s)	234, 306, 396, 843, 846, 956, 1081
TspGWI	ACGGA	1 cut(s)	1137
TspRI	CASTG	5 cut(s)	43, 456, 485, 1015, 1021
VneI	GTGCAC	1 cut(s)	34
VpaK11BI	GGWCC	3 cut(s)	265, 581, 668
XspI	CTAG	1 cut(s)	338
ZrmI	AGTACT	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.