Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0008086

Physical Location & Seq

Genomic Coordinates Reverse (-)

63082286 .. 63083947

Gene Structure 1662 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG424200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGCTTTCAAAGCATTTAACCAGTTGGAAGGAGTATTATGAGTGGAGATCCATCCCACTGTATTCACCCATTGCTTTGCTTCTTCACTGGCCTCTTACAATTTACTATGCCACTCAAGTAGCTGGTTCAGGAAGCTGGAGACCTGGAATCAATGGCAAATTGCACATACACTATCTTGGCCCTGAGAAAGAGCTTCTTCAGCTTTCTGTCTTCTCGGAGCTGCATGCGCTTTTCCCTAACATGGATGTGCATATAGATCTTATTGGACCTTCAATTCCACAACATAGGGATGGTGAGAGGATTGAGCTGTGCAATTATGCTCATTGCCTCGATAGAGATTGCGTTTGTAAATCCTCAATTGAGAGTGATGTACATACTAATGAAACTTCAGCTGTTACATTGCAACTTAGGAGGGGACTTTATCATGAACGTTACACAGATATAGCTAAGGATTCATCTCCTCATATAGTAATTGCTCCAAATGCCGGCATTGCTGCTTATTCAAGCTGGTTACCAACAATTGAGCTGATAAAGGATATGAATATACCATCAGTTTTTTCCGATTACTGTGAAGAAGCTTGTCATCTTGGAGCTCGTTGCATTAGCAGTGTCACTGGCTGTCCTCTAAACATTCCGATTCAATTAAATCCATTCAGGCAACCGATGGTGGTAGAAAACAGTGCTCTCGTCATCCCTTGCTACTCGAATTGCTTCCTCTACGGAATGTCAAAGTGGTCTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007276 GO:0007281 GO:0007283 GO:0007286 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0019899 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0042826 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044703 GO:0045892 GO:0045934 GO:0048232 GO:0048468 GO:0048515 GO:0048519 GO:0048523 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-MYND

Protein Analysis

247

Amino Acids

27.89

Weight (kDa)

6.03

Isoelectric Point (pI)

52.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MSS51_C	PF20179	31 - 223	1.8e-35	MSS51 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70150
fragaria_vesca	FvH4_4g35220 FvH4_4g35220 FvH4_4g35220 FvH4_4g35220 FvH4_4g35220 FvH4_4g35220
malus_domestica	MD16G1084700.v1.1
prunus_persica	Prupe.1G261400_v2.0.a1 Prupe.1G261400_v2.0.a1 Prupe.1G261400_v2.0.a1
pyrus_communis	pycom13g07380
rosa_chinensis	RchiOBHm_Chr4g0444821
rosa_laevigata	RLG00000005799
rosa_multiflora	Rmu_sc0007130.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385310
rosa_rugosa	Rorug04G0355300
rosa_samantha	Rh4AG416700 Rh4BG428500 Rh4BG428600 Rh4CG443200 Rh4DG424200 Rh4DG424300
rosa_wichuraiana	Rw4G035720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	430
AclWI	GGATC	1 cut(s)	42
AcuI	CTGAAG	2 cut(s)	182, 372
AfaI	GTAC	1 cut(s)	372
AfiI	CCNNNNNNNGG	2 cut(s)	241, 485
AgsI	TTSAA	4 cut(s)	9, 273, 504, 641
AjnI	CCWGG	1 cut(s)	142
Alw21I	GWGCWC	2 cut(s)	595, 685
Alw26I	GTCTC	1 cut(s)	133
AlwI	GGATC	1 cut(s)	42
AoxI	GGCC	2 cut(s)	89, 178
ApeKI	GCWGC	2 cut(s)	220, 494
Asp700I	GAANNNNTTC	1 cut(s)	710
AspLEI	GCGC	1 cut(s)	229
AspS9I	GGNCC	2 cut(s)	179, 266
AsuHPI	GGTGA	2 cut(s)	57, 305
AvaII	GGWCC	1 cut(s)	266
BanII	GRGCYC	1 cut(s)	595
BbsI	GAAGAC	1 cut(s)	202
Bbv12I	GWGCWC	2 cut(s)	595, 685
BbvI	GCAGC	2 cut(s)	207, 481
BccI	CCATC	4 cut(s)	59, 284, 556, 658
BciT130I	CCWGG	1 cut(s)	144
BcoDI	GTCTC	1 cut(s)	133
BglII	AGATCT	1 cut(s)	256
BisI	GCNGC	2 cut(s)	221, 495
BlsI	GCNGC	2 cut(s)	222, 496
Bme1390I	CCNGG	1 cut(s)	144
Bme18I	GGWCC	1 cut(s)	266
BmgT120I	GGNCC	2 cut(s)	179, 266
BmrFI	CCNGG	1 cut(s)	144
BpiI	GAAGAC	1 cut(s)	202
BpmI	CTGGAG	1 cut(s)	157
Bpu10I	CCTNAGC	1 cut(s)	447
BpuEI	CTTGAG	1 cut(s)	99
BsaI	GGTCTC	1 cut(s)	133
Bsc4I	CCNNNNNNNGG	2 cut(s)	241, 485
Bse118I	RCCGGY	1 cut(s)	485
Bse1I	ACTGG	3 cut(s)	21, 92, 619
Bse3DI	GCAATG	4 cut(s)	69, 322, 398, 489
BseBI	CCWGG	1 cut(s)	144
BseGI	GGATG	4 cut(s)	51, 250, 295, 690
BseLI	CCNNNNNNNGG	2 cut(s)	241, 485
BseMI	GCAATG	4 cut(s)	69, 322, 398, 489
BseMII	CTCAG	1 cut(s)	174
BseNI	ACTGG	3 cut(s)	21, 92, 619
BseRI	GAGGAG	1 cut(s)	450
BseXI	GCAGC	2 cut(s)	207, 481
BshFI	GGCC	2 cut(s)	91, 180
BsiHKAI	GWGCWC	2 cut(s)	595, 685
BsiSI	CCGG	1 cut(s)	486
BslFI	GGGAC	1 cut(s)	429
BslI	CCNNNNNNNGG	2 cut(s)	241, 485
BsmAI	GTCTC	1 cut(s)	133
BsmFI	GGGAC	1 cut(s)	429
BsnI	GGCC	2 cut(s)	91, 180
Bso31I	GGTCTC	1 cut(s)	133
Bsp1286I	GDGCHC	2 cut(s)	595, 685
Bsp1407I	TGTACA	1 cut(s)	370
Bsp143I	GATC	2 cut(s)	47, 256
BspANI	GGCC	2 cut(s)	91, 180
BspCNI	CTCAG	1 cut(s)	175
BspHI	TCATGA	1 cut(s)	424
BspPI	GGATC	1 cut(s)	42
BspTNI	GGTCTC	1 cut(s)	133
BsrDI	GCAATG	4 cut(s)	69, 322, 398, 489
BsrFI	RCCGGY	1 cut(s)	485
BsrGI	TGTACA	1 cut(s)	370
BsrI	ACTGG	3 cut(s)	21, 92, 619
BssAI	RCCGGY	1 cut(s)	485
BssMI	GATC	2 cut(s)	47, 256
Bst2UI	CCWGG	1 cut(s)	144
Bst4CI	ACNGT	3 cut(s)	60, 569, 680
BstAUI	TGTACA	1 cut(s)	370
BstC8I	GCNNGC	2 cut(s)	225, 487
BstDEI	CTNAG	3 cut(s)	183, 407, 447
BstEII	GGTNACC	1 cut(s)	510
BstF5I	GGATG	4 cut(s)	51, 250, 295, 690
BstHHI	GCGC	1 cut(s)	229
BstKTI	GATC	2 cut(s)	50, 259
BstMAI	GTCTC	1 cut(s)	133
BstMBI	GATC	2 cut(s)	47, 256
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 199, 226, 482, 491
BstNI	CCWGG	1 cut(s)	144
BstNSI	RCATGY	1 cut(s)	227
BstPI	GGTNACC	1 cut(s)	510
BstSCI	CCNGG	1 cut(s)	142
BstV1I	GCAGC	2 cut(s)	207, 481
BstV2I	GAAGAC	1 cut(s)	202
BstX2I	RGATCY	2 cut(s)	47, 256
BstYI	RGATCY	2 cut(s)	47, 256
BsuRI	GGCC	2 cut(s)	91, 180
BtsCI	GGATG	4 cut(s)	51, 250, 295, 690
BtsI	GCAGTG	1 cut(s)	613
BtsIMutI	CAGTG	5 cut(s)	56, 85, 612, 613, 685
Cac8I	GCNNGC	2 cut(s)	225, 487
CciI	TCATGA	1 cut(s)	424
CfoI	GCGC	1 cut(s)	229
Cfr10I	RCCGGY	1 cut(s)	485
Cfr13I	GGNCC	2 cut(s)	179, 266
Csp6I	GTAC	1 cut(s)	371
CviAII	CATG	3 cut(s)	224, 241, 425
CviQI	GTAC	1 cut(s)	371
DdeI	CTNAG	3 cut(s)	183, 407, 447
DpnI	GATC	2 cut(s)	49, 258
DpnII	GATC	2 cut(s)	47, 256
Ecl136II	GAGCTC	1 cut(s)	593
Eco24I	GRGCYC	1 cut(s)	595
Eco31I	GGTCTC	1 cut(s)	133
Eco47I	GGWCC	1 cut(s)	266
Eco53kI	GAGCTC	1 cut(s)	593
Eco57I	CTGAAG	2 cut(s)	182, 372
Eco91I	GGTNACC	1 cut(s)	510
EcoICRI	GAGCTC	1 cut(s)	593
EcoO65I	GGTNACC	1 cut(s)	510
EcoRII	CCWGG	1 cut(s)	142
EcoT38I	GRGCYC	1 cut(s)	595
FaeI	CATG	3 cut(s)	227, 244, 428
FalI	AAGNNNNNCTT	2 cut(s)	180, 212
FaqI	GGGAC	1 cut(s)	429
FatI	CATG	3 cut(s)	223, 240, 424
Fnu4HI	GCNGC	2 cut(s)	221, 495
FokI	GGATG	4 cut(s)	38, 257, 302, 677
FriOI	GRGCYC	1 cut(s)	595
Fsp4HI	GCNGC	2 cut(s)	221, 495
GlaI	GCGC	1 cut(s)	228
GluI	GCNGC	2 cut(s)	221, 495
GsuI	CTGGAG	1 cut(s)	157
HaeIII	GGCC	2 cut(s)	91, 180
HapII	CCGG	1 cut(s)	486
HhaI	GCGC	1 cut(s)	229
Hin1II	CATG	3 cut(s)	227, 244, 428
Hin6I	GCGC	1 cut(s)	227
HinP1I	GCGC	1 cut(s)	227
HindIII	AAGCTT	1 cut(s)	576
HinfI	GANTC	3 cut(s)	147, 452, 637
HpaII	CCGG	1 cut(s)	486
HphI	GGTGA	2 cut(s)	57, 305
Hpy188I	TCNGA	3 cut(s)	217, 562, 636
Hpy188III	TCNNGA	2 cut(s)	129, 425
HpyAV	CCTTC	2 cut(s)	22, 279
HpyCH4III	ACNGT	3 cut(s)	60, 569, 680
HpyCH4IV	ACGT	1 cut(s)	430
HpyCH4V	TGCA	6 cut(s)	163, 223, 250, 312, 403, 600
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 199, 226, 482, 491
HpyF3I	CTNAG	3 cut(s)	183, 407, 447
HpySE526I	ACGT	1 cut(s)	430
Hsp92II	CATG	3 cut(s)	227, 244, 428
HspAI	GCGC	1 cut(s)	227
KroI	GCCGGC	1 cut(s)	485
KroNI	GCCGGC	1 cut(s)	487
Kzo9I	GATC	2 cut(s)	47, 256
LmnI	GCTCC	3 cut(s)	217, 481, 590
Lsp1109I	GCAGC	2 cut(s)	207, 481
MaeII	ACGT	1 cut(s)	430
MaeIII	GTNAC	4 cut(s)	394, 431, 510, 610
MalI	GATC	2 cut(s)	49, 258
MboI	GATC	2 cut(s)	47, 256
MboII	GAAGA	4 cut(s)	74, 188, 202, 584
MfeI	CAATTG	2 cut(s)	357, 519
MflI	RGATCY	2 cut(s)	47, 256
MhlI	GDGCHC	2 cut(s)	595, 685
MluCI	AATT	9 cut(s)	99, 158, 273, 313, 357, 471, 519, 641, 706
MmeI	TCCRAC	1 cut(s)	5
MnlI	CCTC	8 cut(s)	102, 291, 338, 364, 405, 471, 633, 725
MroNI	GCCGGC	1 cut(s)	485
MroXI	GAANNNNTTC	1 cut(s)	710
MseI	TTAA	2 cut(s)	17, 644
MslI	CAYNNNNRTG	3 cut(s)	245, 288, 378
MspA1I	CMGCKG	1 cut(s)	392
MspI	CCGG	1 cut(s)	486
MspR9I	CCNGG	1 cut(s)	144
MunI	CAATTG	2 cut(s)	357, 519
MvaI	CCWGG	1 cut(s)	144
MwoI	GCNNNNNNNGC	5 cut(s)	10, 199, 226, 482, 491
NaeI	GCCGGC	1 cut(s)	487
NdeII	GATC	2 cut(s)	47, 256
NgoMIV	GCCGGC	1 cut(s)	485
NlaIII	CATG	3 cut(s)	227, 244, 428
NmuCI	GTSAC	1 cut(s)	610
NspI	RCATGY	1 cut(s)	227
PaeI	GCATGC	1 cut(s)	227
PagI	TCATGA	1 cut(s)	424
PdiI	GCCGGC	1 cut(s)	487
PdmI	GAANNNNTTC	1 cut(s)	710
PfeI	GAWTC	3 cut(s)	147, 452, 637
PkrI	GCNGC	2 cut(s)	222, 496
Psp124BI	GAGCTC	1 cut(s)	595
Psp1406I	AACGTT	1 cut(s)	430
Psp6I	CCWGG	1 cut(s)	142
PspEI	GGTNACC	1 cut(s)	510
PspGI	CCWGG	1 cut(s)	142
PspPI	GGNCC	2 cut(s)	179, 266
PsuI	RGATCY	2 cut(s)	47, 256
PvuII	CAGCTG	1 cut(s)	392
RsaI	GTAC	1 cut(s)	372
RsaNI	GTAC	1 cut(s)	371
RseI	CAYNNNNRTG	3 cut(s)	245, 288, 378
SacI	GAGCTC	1 cut(s)	595
SaqAI	TTAA	2 cut(s)	17, 644
SatI	GCNGC	2 cut(s)	221, 495
Sau3AI	GATC	2 cut(s)	47, 256
Sau96I	GGNCC	2 cut(s)	179, 266
ScrFI	CCNGG	1 cut(s)	144
SduI	GDGCHC	2 cut(s)	595, 685
SinI	GGWCC	1 cut(s)	266
SmiMI	CAYNNNNRTG	3 cut(s)	245, 288, 378
SmlI	CTYRAG	1 cut(s)	114
SmoI	CTYRAG	1 cut(s)	114
SphI	GCATGC	1 cut(s)	227
Sse9I	AATT	9 cut(s)	99, 158, 273, 313, 357, 471, 519, 641, 706
SstI	GAGCTC	1 cut(s)	595
StyD4I	CCNGG	1 cut(s)	142
TaaI	ACNGT	3 cut(s)	60, 569, 680
TaiI	ACGT	1 cut(s)	433
TaqI	TCGA	2 cut(s)	330, 704
TasI	AATT	9 cut(s)	99, 158, 273, 313, 357, 471, 519, 641, 706
TatI	WGTACW	1 cut(s)	370
TfiI	GAWTC	3 cut(s)	147, 452, 637
Tru1I	TTAA	2 cut(s)	17, 644
Tru9I	TTAA	2 cut(s)	17, 644
TscAI	CASTG	5 cut(s)	63, 92, 613, 619, 685
TseFI	GTSAC	1 cut(s)	610
TseI	GCWGC	2 cut(s)	220, 494
Tsp45I	GTSAC	1 cut(s)	610
TspDTI	ATGAA	4 cut(s)	396, 441, 444, 554
TspGWI	ACGGA	1 cut(s)	735
TspRI	CASTG	5 cut(s)	63, 92, 613, 619, 685
VpaK11BI	GGWCC	1 cut(s)	266
XceI	RCATGY	1 cut(s)	227
XmnI	GAANNNNTTC	1 cut(s)	710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.