Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0008086

Physical Location & Seq

Genomic Coordinates Forward (+)

4903008 .. 4905085

Gene Structure 2078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g07380.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGAAGCATATGGATATCTTGAATGAGTTTCCTTTCACTTTTACTCAACAAGCTACTGTTCAGGGGTCCATCAAATGGGAATGTGGTTGTGGGGATTCAGTTATTTCATTTGATTGTTTAAGGTTAAATAATTCTTGGGATCTCTCGAATATATTTTGCCCTTGTACTGATCCTTCTGTTACGATATCTGAATGTTTAACCAGTTGGAAGCAGAACTGTGAGTGGAGGTCCATCCCGCTGCATTCACCTGTTGCGTTGCTTCTCCATTGGATGGATAGGGATGGCGAGATGGTCACGTTATCCAATTATGCACATGGCCTTGATAGAGATTGCATTTGTAAATCCTCGAGTGAGACTGCCAGCGGGGATGTACATACTAGCGAACCTTCAGCAGTTACATTGCACCTTAGAAGCGGCTTTTATCATGACCGTTACATGGATATAACTAAGGAGTTAATAAAGAATATGAACATCCCAGCGGTATTTTCCGATTACTGCAAAGAAGCTTGTCATCTTGGAGCTCGTTGCGTAAGCAGCATTCAGTTAAATCCATTCAGGCAACCGATGGCGGTGGAAGACAGTGTTCTTGTTCTTCCTTGCTACTCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007276 GO:0007281 GO:0007283 GO:0007286 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0019899 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0042826 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044703 GO:0045892 GO:0045934 GO:0048232 GO:0048468 GO:0048515 GO:0048519 GO:0048523 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-MYND

Protein Analysis

204

Amino Acids

22.91

Weight (kDa)

5.24

Isoelectric Point (pI)

56.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70150
fragaria_vesca	FvH4_4g35220 FvH4_4g35220 FvH4_4g35220 FvH4_4g35220 FvH4_4g35220 FvH4_4g35220
malus_domestica	MD16G1084700.v1.1
prunus_persica	Prupe.1G261400_v2.0.a1 Prupe.1G261400_v2.0.a1 Prupe.1G261400_v2.0.a1
pyrus_communis	pycom13g07380
rosa_chinensis	RchiOBHm_Chr4g0444821
rosa_laevigata	RLG00000005799
rosa_multiflora	Rmu_sc0007130.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385310
rosa_rugosa	Rorug04G0355300
rosa_samantha	Rh4AG416700 Rh4BG428500 Rh4BG428600 Rh4CG443200 Rh4DG424200 Rh4DG424300
rosa_wichuraiana	Rw4G035720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	75, 271
AciI	CCGC	5 cut(s)	236, 363, 414, 479, 569
AclWI	GGATC	2 cut(s)	147, 164
AcuI	CTGAAG	1 cut(s)	372
AfaI	GTAC	2 cut(s)	166, 372
AfiI	CCNNNNNNNGG	3 cut(s)	75, 271, 436
AgsI	TTSAA	1 cut(s)	22
AluBI	AGCT	3 cut(s)	53, 506, 521
AluI	AGCT	3 cut(s)	53, 506, 521
Alw21I	GWGCWC	1 cut(s)	523
Alw26I	GTCTC	1 cut(s)	347
AlwI	GGATC	2 cut(s)	147, 164
Ama87I	CYCGRG	1 cut(s)	346
AoxI	GGCC	1 cut(s)	316
ApeKI	GCWGC	2 cut(s)	238, 534
AspS9I	GGNCC	2 cut(s)	66, 228
AsuHPI	GGTGA	1 cut(s)	237
AvaI	CYCGRG	1 cut(s)	346
AvaII	GGWCC	2 cut(s)	66, 228
BanII	GRGCYC	1 cut(s)	523
BarI	GAAGNNNNNNTAC	2 cut(s)	157, 189
BbsI	GAAGAC	1 cut(s)	582
Bbv12I	GWGCWC	1 cut(s)	523
BbvI	GCAGC	2 cut(s)	225, 546
BccI	CCATC	6 cut(s)	77, 239, 265, 275, 283, 559
BcoDI	GTCTC	1 cut(s)	347
BfaI	CTAG	1 cut(s)	378
BisI	GCNGC	3 cut(s)	239, 415, 535
BlsI	GCNGC	3 cut(s)	240, 416, 536
Bme18I	GGWCC	2 cut(s)	66, 228
BmeT110I	CYCGRG	1 cut(s)	346
BmgT120I	GGNCC	2 cut(s)	66, 228
BmiI	GGNNCC	1 cut(s)	67
BpiI	GAAGAC	1 cut(s)	582
Bsc4I	CCNNNNNNNGG	3 cut(s)	75, 271, 436
Bse1I	ACTGG	1 cut(s)	201
Bse3DI	GCAATG	1 cut(s)	398
BseGI	GGATG	5 cut(s)	231, 276, 286, 373, 471
BseLI	CCNNNNNNNGG	3 cut(s)	75, 271, 436
BseMI	GCAATG	1 cut(s)	398
BseNI	ACTGG	1 cut(s)	201
BseXI	GCAGC	2 cut(s)	225, 546
BseYI	CCCAGC	1 cut(s)	475
BshFI	GGCC	1 cut(s)	318
BsiHKAI	GWGCWC	1 cut(s)	523
BsiHKCI	CYCGRG	1 cut(s)	346
BslI	CCNNNNNNNGG	3 cut(s)	75, 271, 436
BsmAI	GTCTC	1 cut(s)	347
BsmI	GAATGC	2 cut(s)	241, 537
BsnI	GGCC	1 cut(s)	318
BsoBI	CYCGRG	1 cut(s)	346
Bsp1286I	GDGCHC	1 cut(s)	523
Bsp1407I	TGTACA	1 cut(s)	370
Bsp143I	GATC	2 cut(s)	139, 169
BspACI	CCGC	5 cut(s)	236, 363, 414, 479, 569
BspANI	GGCC	1 cut(s)	318
BspHI	TCATGA	1 cut(s)	424
BspLI	GGNNCC	1 cut(s)	67
BspPI	GGATC	2 cut(s)	147, 164
BsrDI	GCAATG	1 cut(s)	398
BsrGI	TGTACA	1 cut(s)	370
BsrI	ACTGG	1 cut(s)	201
BssMI	GATC	2 cut(s)	139, 169
Bst4CI	ACNGT	4 cut(s)	58, 218, 431, 581
BstAUI	TGTACA	1 cut(s)	370
BstC8I	GCNNGC	1 cut(s)	361
BstDEI	CTNAG	2 cut(s)	407, 447
BstF5I	GGATG	5 cut(s)	231, 276, 286, 373, 471
BstKTI	GATC	2 cut(s)	142, 172
BstMAI	GTCTC	1 cut(s)	347
BstMBI	GATC	2 cut(s)	139, 169
BstMWI	GCNNNNNNNGC	1 cut(s)	534
BstV1I	GCAGC	2 cut(s)	225, 546
BstV2I	GAAGAC	1 cut(s)	582
BstX2I	RGATCY	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	139
BsuRI	GGCC	1 cut(s)	318
BtsCI	GGATG	5 cut(s)	231, 276, 286, 373, 471
BtsIMutI	CAGTG	1 cut(s)	586
Cac8I	GCNNGC	1 cut(s)	361
CciI	TCATGA	1 cut(s)	424
Cfr13I	GGNCC	2 cut(s)	66, 228
Csp6I	GTAC	2 cut(s)	165, 371
CviAII	CATG	3 cut(s)	314, 425, 436
CviJI	RGCY	5 cut(s)	53, 318, 417, 506, 521
CviKI_1	RGCY	5 cut(s)	53, 318, 417, 506, 521
CviQI	GTAC	2 cut(s)	165, 371
DdeI	CTNAG	2 cut(s)	407, 447
DpnI	GATC	2 cut(s)	141, 171
DpnII	GATC	2 cut(s)	139, 169
Ecl136II	GAGCTC	1 cut(s)	521
Eco24I	GRGCYC	1 cut(s)	523
Eco32I	GATATC	2 cut(s)	16, 186
Eco47I	GGWCC	2 cut(s)	66, 228
Eco53kI	GAGCTC	1 cut(s)	521
Eco57I	CTGAAG	1 cut(s)	372
Eco88I	CYCGRG	1 cut(s)	346
EcoICRI	GAGCTC	1 cut(s)	521
EcoRV	GATATC	2 cut(s)	16, 186
EcoT38I	GRGCYC	1 cut(s)	523
FaeI	CATG	3 cut(s)	317, 428, 439
FatI	CATG	3 cut(s)	313, 424, 435
FauI	CCCGC	2 cut(s)	243, 356
FauNDI	CATATG	1 cut(s)	9
Fnu4HI	GCNGC	3 cut(s)	239, 415, 535
FokI	GGATG	5 cut(s)	218, 283, 293, 380, 458
FriOI	GRGCYC	1 cut(s)	523
Fsp4HI	GCNGC	3 cut(s)	239, 415, 535
FspBI	CTAG	1 cut(s)	378
GluI	GCNGC	3 cut(s)	239, 415, 535
GsaI	CCCAGC	1 cut(s)	479
HaeIII	GGCC	1 cut(s)	318
Hin1II	CATG	3 cut(s)	317, 428, 439
HindIII	AAGCTT	1 cut(s)	504
HinfI	GANTC	1 cut(s)	95
HphI	GGTGA	1 cut(s)	237
Hpy188I	TCNGA	2 cut(s)	190, 490
Hpy188III	TCNNGA	3 cut(s)	19, 145, 425
HpyAV	CCTTC	2 cut(s)	183, 396
HpyCH4III	ACNGT	4 cut(s)	58, 218, 431, 581
HpyCH4IV	ACGT	1 cut(s)	296
HpyCH4V	TGCA	5 cut(s)	241, 311, 333, 403, 498
HpyF10VI	GCNNNNNNNGC	1 cut(s)	534
HpyF3I	CTNAG	2 cut(s)	407, 447
HpySE526I	ACGT	1 cut(s)	296
Hsp92II	CATG	3 cut(s)	317, 428, 439
Kzo9I	GATC	2 cut(s)	139, 169
LmnI	GCTCC	1 cut(s)	518
LpnPI	CCDG	6 cut(s)	47, 214, 261, 373, 489, 541
Lsp1109I	GCAGC	2 cut(s)	225, 546
MaeI	CTAG	1 cut(s)	378
MaeII	ACGT	1 cut(s)	296
MaeIII	GTNAC	4 cut(s)	178, 292, 394, 431
MalI	GATC	2 cut(s)	141, 171
MboI	GATC	2 cut(s)	139, 169
MboII	GAAGA	2 cut(s)	584, 587
MflI	RGATCY	1 cut(s)	139
MhlI	GDGCHC	1 cut(s)	523
MluCI	AATT	3 cut(s)	130, 304, 607
MmeI	TCCRAC	1 cut(s)	185
MnlI	CCTC	2 cut(s)	219, 355
MseI	TTAA	5 cut(s)	119, 125, 197, 455, 545
MspA1I	CMGCKG	3 cut(s)	238, 363, 479
Mva1269I	GAATGC	2 cut(s)	241, 537
MwoI	GCNNNNNNNGC	1 cut(s)	534
NdeI	CATATG	1 cut(s)	9
NdeII	GATC	2 cut(s)	139, 169
NlaIII	CATG	3 cut(s)	317, 428, 439
NlaIV	GGNNCC	1 cut(s)	67
NmuCI	GTSAC	1 cut(s)	292
PaeR7I	CTCGAG	1 cut(s)	346
PagI	TCATGA	1 cut(s)	424
PctI	GAATGC	2 cut(s)	241, 537
PfeI	GAWTC	1 cut(s)	95
PflMI	CCANNNNNTGG	2 cut(s)	75, 271
PkrI	GCNGC	3 cut(s)	240, 416, 536
Psp124BI	GAGCTC	1 cut(s)	523
PspFI	CCCAGC	1 cut(s)	475
PspN4I	GGNNCC	1 cut(s)	67
PspPI	GGNCC	2 cut(s)	66, 228
PspXI	VCTCGAGB	1 cut(s)	346
PsuI	RGATCY	1 cut(s)	139
RsaI	GTAC	2 cut(s)	166, 372
RsaNI	GTAC	2 cut(s)	165, 371
SacI	GAGCTC	1 cut(s)	523
SaqAI	TTAA	5 cut(s)	119, 125, 197, 455, 545
SatI	GCNGC	3 cut(s)	239, 415, 535
Sau3AI	GATC	2 cut(s)	139, 169
Sau96I	GGNCC	2 cut(s)	66, 228
SduI	GDGCHC	1 cut(s)	523
SetI	ASST	9 cut(s)	55, 125, 230, 250, 299, 388, 408, 508, 523
Sfr274I	CTCGAG	1 cut(s)	346
SinI	GGWCC	2 cut(s)	66, 228
SlaI	CTCGAG	1 cut(s)	346
SmlI	CTYRAG	1 cut(s)	346
SmoI	CTYRAG	1 cut(s)	346
Sse9I	AATT	3 cut(s)	130, 304, 607
SsiI	CCGC	5 cut(s)	236, 363, 414, 479, 569
SspMI	CTAG	1 cut(s)	378
SstI	GAGCTC	1 cut(s)	523
TaaI	ACNGT	4 cut(s)	58, 218, 431, 581
TaiI	ACGT	1 cut(s)	299
TaqI	TCGA	2 cut(s)	146, 347
TasI	AATT	3 cut(s)	130, 304, 607
TatI	WGTACW	2 cut(s)	164, 370
TauI	GCSGC	1 cut(s)	417
TfiI	GAWTC	1 cut(s)	95
Tru1I	TTAA	5 cut(s)	119, 125, 197, 455, 545
Tru9I	TTAA	5 cut(s)	119, 125, 197, 455, 545
TscAI	CASTG	1 cut(s)	586
TseFI	GTSAC	1 cut(s)	292
TseI	GCWGC	2 cut(s)	238, 534
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	3 cut(s)	17, 96, 482
TspRI	CASTG	1 cut(s)	586
Van91I	CCANNNNNTGG	2 cut(s)	75, 271
VpaK11BI	GGWCC	2 cut(s)	66, 228
XhoI	CTCGAG	1 cut(s)	346
XspI	CTAG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.