Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0008086

Physical Location & Seq

Genomic Coordinates Reverse (-)

67917724 .. 67924844

Gene Structure 7121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG443200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGGAAAACTGCAAATTTTGCATTGGCGTGATCATAAAGAAGAGTGTGAAAGGTTAGAAGAACAGATGGAGCAGATAGATATCTTGAACGAGTTTCCTTTCACTTTTTCTGAAGAAGCTACAGTTCAGGTTTGTGAAAAGCAGGAGACAAGGTGTTCATTCTTGAGAAAAAGAGGGGTCCATCAAACGGGAATGTGGTTGTATGAATGTTGTTGCGGGGAACCAGTTATGTCCTTTGATCATTCAAGGTTAAATAACACTTGGGATCTCTCAAACACCCTCTGCCCATGTAATGAACCTATATTCATGCTTTCAAAGCATTTAACCAGTTGGAAGGAGTATTATGAGTGGAGATCCATCCCACTGTATTCACCCATTGCTTTGCTTCTTCACTGGCCTCTTACAATTTACTATGCCACTCAAGTAGCTGGTTCAGGAAGCTGGAGACCTGGAATCAATGGCAAATTGCACATACACTATCTTGGCCCTGAGAAAGAGCTTCTTCAGCTTTCTGTCTTCTCGGAGCTGCATGCGCTTTTCCCTAACATGGATGTGCATATAGATCTTATTGGACCTTCAATTCCACAACATAGGGATGGTGAGAGGATTGAGCTGTGCAATTATGCTCATTGCCTCGATAGAGATTGCGTTTGTAAATCCTCAATTGAGAGTGATGTACATACTAATGAAACTTCAGCTGTTACATTGCAACTTAGGAGGGGACTTTATCATGAACGTTACACAGATATAGCTAAGGATTCATCTCCTCATATAGTAATTGCTCCAAATGCCGGCATTGCTGCTTATTCAAGCTGGTTACCAACAATTGAGCTGATAAAGGATATGGATATACCATCAGTTTTTTCCGATTACTGTGAAGAAGCTTGTCATCTTGGAGCTCGTTGCATTAGCAGTGTCACTGGCTGTCCTCTAAACATTCCGATTCAATTAAATCCATTCAGGCAACCGATGGTGGTAGAAAACAGTGCTCTCGTCATCCCTTGCTACTCGAATTGCTTCCTCTACGGAATGTCAAAGTGGTCTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007276 GO:0007281 GO:0007283 GO:0007286 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0019899 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0042826 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044703 GO:0045892 GO:0045934 GO:0048232 GO:0048468 GO:0048515 GO:0048519 GO:0048523 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-MYND

Protein Analysis

349

Amino Acids

40.05

Weight (kDa)

5.48

Isoelectric Point (pI)

54.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MSS51_C	PF20179	133 - 325	1e-34	MSS51 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70150
fragaria_vesca	FvH4_4g35220 FvH4_4g35220 FvH4_4g35220 FvH4_4g35220 FvH4_4g35220 FvH4_4g35220
malus_domestica	MD16G1084700.v1.1
prunus_persica	Prupe.1G261400_v2.0.a1 Prupe.1G261400_v2.0.a1 Prupe.1G261400_v2.0.a1
pyrus_communis	pycom13g07380
rosa_chinensis	RchiOBHm_Chr4g0444821
rosa_laevigata	RLG00000005799
rosa_multiflora	Rmu_sc0007130.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385310
rosa_rugosa	Rorug04G0355300
rosa_samantha	Rh4AG416700 Rh4BG428500 Rh4BG428600 Rh4CG443200 Rh4DG424200 Rh4DG424300
rosa_wichuraiana	Rw4G035720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	216
AclI	AACGTT	1 cut(s)	736
AclWI	GGATC	2 cut(s)	273, 348
AcsI	RAATTY	1 cut(s)	15
AcuI	CTGAAG	3 cut(s)	132, 488, 678
AfaI	GTAC	1 cut(s)	678
AfiI	CCNNNNNNNGG	3 cut(s)	187, 547, 791
AgsI	TTSAA	6 cut(s)	88, 246, 315, 579, 810, 947
AjnI	CCWGG	1 cut(s)	448
Alw21I	GWGCWC	2 cut(s)	901, 991
Alw26I	GTCTC	2 cut(s)	140, 439
AlwI	GGATC	2 cut(s)	273, 348
AoxI	GGCC	2 cut(s)	395, 484
ApeKI	GCWGC	2 cut(s)	526, 800
ApoI	RAATTY	1 cut(s)	15
Asp700I	GAANNNNTTC	1 cut(s)	1016
AspLEI	GCGC	1 cut(s)	535
AspS9I	GGNCC	3 cut(s)	178, 485, 572
AsuHPI	GGTGA	2 cut(s)	363, 611
AvaII	GGWCC	2 cut(s)	178, 572
BanII	GRGCYC	1 cut(s)	901
BbsI	GAAGAC	1 cut(s)	508
Bbv12I	GWGCWC	2 cut(s)	901, 991
BbvI	GCAGC	2 cut(s)	513, 787
BccI	CCATC	6 cut(s)	61, 189, 365, 590, 862, 964
BciT130I	CCWGG	1 cut(s)	450
BclI	TGATCA	2 cut(s)	31, 238
BcoDI	GTCTC	2 cut(s)	140, 439
BfmI	CTRYAG	1 cut(s)	120
BglII	AGATCT	1 cut(s)	562
BisI	GCNGC	2 cut(s)	527, 801
BlsI	GCNGC	2 cut(s)	528, 802
Bme1390I	CCNGG	1 cut(s)	450
Bme18I	GGWCC	2 cut(s)	178, 572
BmgT120I	GGNCC	3 cut(s)	178, 485, 572
BmiI	GGNNCC	2 cut(s)	179, 222
BmrFI	CCNGG	1 cut(s)	450
BpiI	GAAGAC	1 cut(s)	508
BpmI	CTGGAG	1 cut(s)	463
Bpu10I	CCTNAGC	1 cut(s)	753
BpuEI	CTTGAG	2 cut(s)	184, 405
BsaBI	GATNNNNATC	1 cut(s)	80
BsaI	GGTCTC	1 cut(s)	439
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	3 cut(s)	187, 547, 791
Bse118I	RCCGGY	1 cut(s)	791
Bse1I	ACTGG	4 cut(s)	224, 327, 398, 925
Bse3DI	GCAATG	4 cut(s)	375, 628, 704, 795
Bse8I	GATNNNNATC	1 cut(s)	80
BseBI	CCWGG	1 cut(s)	450
BseGI	GGATG	4 cut(s)	357, 556, 601, 996
BseJI	GATNNNNATC	1 cut(s)	80
BseLI	CCNNNNNNNGG	3 cut(s)	187, 547, 791
BseMI	GCAATG	4 cut(s)	375, 628, 704, 795
BseMII	CTCAG	1 cut(s)	480
BseNI	ACTGG	4 cut(s)	224, 327, 398, 925
BseRI	GAGGAG	1 cut(s)	756
BseXI	GCAGC	2 cut(s)	513, 787
BshFI	GGCC	2 cut(s)	397, 486
BsiHKAI	GWGCWC	2 cut(s)	901, 991
BsiSI	CCGG	1 cut(s)	792
BslFI	GGGAC	1 cut(s)	735
BslI	CCNNNNNNNGG	3 cut(s)	187, 547, 791
BsmAI	GTCTC	2 cut(s)	140, 439
BsmFI	GGGAC	1 cut(s)	735
BsnI	GGCC	2 cut(s)	397, 486
Bso31I	GGTCTC	1 cut(s)	439
Bsp1286I	GDGCHC	2 cut(s)	901, 991
Bsp1407I	TGTACA	1 cut(s)	676
Bsp143I	GATC	5 cut(s)	31, 238, 265, 353, 562
BspACI	CCGC	1 cut(s)	216
BspANI	GGCC	2 cut(s)	397, 486
BspCNI	CTCAG	1 cut(s)	481
BspHI	TCATGA	1 cut(s)	730
BspLI	GGNNCC	2 cut(s)	179, 222
BspPI	GGATC	2 cut(s)	273, 348
BspTNI	GGTCTC	1 cut(s)	439
BsrDI	GCAATG	4 cut(s)	375, 628, 704, 795
BsrFI	RCCGGY	1 cut(s)	791
BsrGI	TGTACA	1 cut(s)	676
BsrI	ACTGG	4 cut(s)	224, 327, 398, 925
BssAI	RCCGGY	1 cut(s)	791
BssMI	GATC	5 cut(s)	31, 238, 265, 353, 562
Bst2UI	CCWGG	1 cut(s)	450
Bst4CI	ACNGT	4 cut(s)	124, 366, 875, 986
Bst6I	CTCTTC	1 cut(s)	36
BstAPI	GCANNNNNTGC	1 cut(s)	19
BstAUI	TGTACA	1 cut(s)	676
BstC8I	GCNNGC	2 cut(s)	531, 793
BstDEI	CTNAG	3 cut(s)	489, 713, 753
BstEII	GGTNACC	1 cut(s)	816
BstF5I	GGATG	4 cut(s)	357, 556, 601, 996
BstHHI	GCGC	1 cut(s)	535
BstKTI	GATC	5 cut(s)	34, 241, 268, 356, 565
BstMAI	GTCTC	2 cut(s)	140, 439
BstMBI	GATC	5 cut(s)	31, 238, 265, 353, 562
BstMWI	GCNNNNNNNGC	6 cut(s)	19, 316, 505, 532, 788, 797
BstNI	CCWGG	1 cut(s)	450
BstNSI	RCATGY	1 cut(s)	533
BstPI	GGTNACC	1 cut(s)	816
BstSCI	CCNGG	1 cut(s)	448
BstSFI	CTRYAG	1 cut(s)	120
BstV1I	GCAGC	2 cut(s)	513, 787
BstV2I	GAAGAC	1 cut(s)	508
BstX2I	RGATCY	3 cut(s)	265, 353, 562
BstYI	RGATCY	3 cut(s)	265, 353, 562
BsuRI	GGCC	2 cut(s)	397, 486
BtsCI	GGATG	4 cut(s)	357, 556, 601, 996
BtsI	GCAGTG	1 cut(s)	919
BtsIMutI	CAGTG	5 cut(s)	362, 391, 918, 919, 991
Cac8I	GCNNGC	2 cut(s)	531, 793
CciI	TCATGA	1 cut(s)	730
CfoI	GCGC	1 cut(s)	535
Cfr10I	RCCGGY	1 cut(s)	791
Cfr13I	GGNCC	3 cut(s)	178, 485, 572
Csp6I	GTAC	1 cut(s)	677
CviAII	CATG	5 cut(s)	288, 307, 530, 547, 731
CviQI	GTAC	1 cut(s)	677
DdeI	CTNAG	3 cut(s)	489, 713, 753
DpnI	GATC	5 cut(s)	33, 240, 267, 355, 564
DpnII	GATC	5 cut(s)	31, 238, 265, 353, 562
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Ecl136II	GAGCTC	1 cut(s)	899
Eco24I	GRGCYC	1 cut(s)	901
Eco31I	GGTCTC	1 cut(s)	439
Eco32I	GATATC	1 cut(s)	82
Eco47I	GGWCC	2 cut(s)	178, 572
Eco53kI	GAGCTC	1 cut(s)	899
Eco57I	CTGAAG	3 cut(s)	132, 488, 678
Eco91I	GGTNACC	1 cut(s)	816
EcoICRI	GAGCTC	1 cut(s)	899
EcoO65I	GGTNACC	1 cut(s)	816
EcoRII	CCWGG	1 cut(s)	448
EcoRV	GATATC	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	901
FaeI	CATG	5 cut(s)	291, 310, 533, 550, 734
FalI	AAGNNNNNCTT	2 cut(s)	486, 518
FaqI	GGGAC	1 cut(s)	735
FatI	CATG	5 cut(s)	287, 306, 529, 546, 730
FauI	CCCGC	1 cut(s)	209
FbaI	TGATCA	2 cut(s)	31, 238
Fnu4HI	GCNGC	2 cut(s)	527, 801
FokI	GGATG	4 cut(s)	344, 563, 608, 983
FriOI	GRGCYC	1 cut(s)	901
Fsp4HI	GCNGC	2 cut(s)	527, 801
GlaI	GCGC	1 cut(s)	534
GluI	GCNGC	2 cut(s)	527, 801
GsuI	CTGGAG	1 cut(s)	463
HaeIII	GGCC	2 cut(s)	397, 486
HapII	CCGG	1 cut(s)	792
HhaI	GCGC	1 cut(s)	535
Hin1II	CATG	5 cut(s)	291, 310, 533, 550, 734
Hin6I	GCGC	1 cut(s)	533
HinP1I	GCGC	1 cut(s)	533
HindIII	AAGCTT	1 cut(s)	882
HinfI	GANTC	3 cut(s)	453, 758, 943
HpaII	CCGG	1 cut(s)	792
HphI	GGTGA	2 cut(s)	363, 611
Hpy188I	TCNGA	4 cut(s)	112, 523, 868, 942
Hpy188III	TCNNGA	4 cut(s)	85, 163, 435, 731
HpyAV	CCTTC	2 cut(s)	328, 585
HpyCH4III	ACNGT	4 cut(s)	124, 366, 875, 986
HpyCH4IV	ACGT	1 cut(s)	736
HpyCH4V	TGCA	8 cut(s)	13, 22, 469, 529, 556, 618, 709, 906
HpyF10VI	GCNNNNNNNGC	6 cut(s)	19, 316, 505, 532, 788, 797
HpyF3I	CTNAG	3 cut(s)	489, 713, 753
HpySE526I	ACGT	1 cut(s)	736
Hsp92II	CATG	5 cut(s)	291, 310, 533, 550, 734
HspAI	GCGC	1 cut(s)	533
KroI	GCCGGC	1 cut(s)	791
KroNI	GCCGGC	1 cut(s)	793
Ksp22I	TGATCA	2 cut(s)	31, 238
Kzo9I	GATC	5 cut(s)	31, 238, 265, 353, 562
LmnI	GCTCC	4 cut(s)	70, 523, 787, 896
Lsp1109I	GCAGC	2 cut(s)	513, 787
MaeII	ACGT	1 cut(s)	736
MaeIII	GTNAC	4 cut(s)	700, 737, 816, 916
MalI	GATC	5 cut(s)	33, 240, 267, 355, 564
MboI	GATC	5 cut(s)	31, 238, 265, 353, 562
MboII	GAAGA	7 cut(s)	53, 71, 125, 380, 494, 508, 890
MfeI	CAATTG	2 cut(s)	663, 825
MflI	RGATCY	3 cut(s)	265, 353, 562
MhlI	GDGCHC	2 cut(s)	901, 991
MmeI	TCCRAC	1 cut(s)	311
MroNI	GCCGGC	1 cut(s)	791
MroXI	GAANNNNTTC	1 cut(s)	1016
MseI	TTAA	3 cut(s)	251, 323, 950
MslI	CAYNNNNRTG	4 cut(s)	27, 551, 594, 684
MspA1I	CMGCKG	1 cut(s)	698
MspI	CCGG	1 cut(s)	792
MspR9I	CCNGG	1 cut(s)	450
MunI	CAATTG	2 cut(s)	663, 825
MvaI	CCWGG	1 cut(s)	450
MwoI	GCNNNNNNNGC	6 cut(s)	19, 316, 505, 532, 788, 797
NaeI	GCCGGC	1 cut(s)	793
NdeII	GATC	5 cut(s)	31, 238, 265, 353, 562
NgoMIV	GCCGGC	1 cut(s)	791
NlaIII	CATG	5 cut(s)	291, 310, 533, 550, 734
NlaIV	GGNNCC	2 cut(s)	179, 222
NmuCI	GTSAC	1 cut(s)	916
NspI	RCATGY	1 cut(s)	533
PaeI	GCATGC	1 cut(s)	533
PagI	TCATGA	1 cut(s)	730
PdiI	GCCGGC	1 cut(s)	793
PdmI	GAANNNNTTC	1 cut(s)	1016
PfeI	GAWTC	3 cut(s)	453, 758, 943
PkrI	GCNGC	2 cut(s)	528, 802
Psp124BI	GAGCTC	1 cut(s)	901
Psp1406I	AACGTT	1 cut(s)	736
Psp6I	CCWGG	1 cut(s)	448
PspEI	GGTNACC	1 cut(s)	816
PspGI	CCWGG	1 cut(s)	448
PspN4I	GGNNCC	2 cut(s)	179, 222
PspPI	GGNCC	3 cut(s)	178, 485, 572
PsuI	RGATCY	3 cut(s)	265, 353, 562
PvuII	CAGCTG	1 cut(s)	698
RsaI	GTAC	1 cut(s)	678
RsaNI	GTAC	1 cut(s)	677
RseI	CAYNNNNRTG	4 cut(s)	27, 551, 594, 684
SacI	GAGCTC	1 cut(s)	901
SaqAI	TTAA	3 cut(s)	251, 323, 950
SatI	GCNGC	2 cut(s)	527, 801
Sau3AI	GATC	5 cut(s)	31, 238, 265, 353, 562
Sau96I	GGNCC	3 cut(s)	178, 485, 572
ScrFI	CCNGG	1 cut(s)	450
SduI	GDGCHC	2 cut(s)	901, 991
SfcI	CTRYAG	1 cut(s)	120
SinI	GGWCC	2 cut(s)	178, 572
SmiMI	CAYNNNNRTG	4 cut(s)	27, 551, 594, 684
SmlI	CTYRAG	2 cut(s)	163, 420
SmoI	CTYRAG	2 cut(s)	163, 420
SphI	GCATGC	1 cut(s)	533
SsiI	CCGC	1 cut(s)	216
SstI	GAGCTC	1 cut(s)	901
StyD4I	CCNGG	1 cut(s)	448
TaaI	ACNGT	4 cut(s)	124, 366, 875, 986
TaiI	ACGT	1 cut(s)	739
TaqI	TCGA	2 cut(s)	636, 1010
TatI	WGTACW	1 cut(s)	676
TfiI	GAWTC	3 cut(s)	453, 758, 943
Tru1I	TTAA	3 cut(s)	251, 323, 950
Tru9I	TTAA	3 cut(s)	251, 323, 950
TscAI	CASTG	5 cut(s)	369, 398, 919, 925, 991
TseFI	GTSAC	1 cut(s)	916
TseI	GCWGC	2 cut(s)	526, 800
Tsp45I	GTSAC	1 cut(s)	916
TspDTI	ATGAA	7 cut(s)	147, 219, 295, 309, 702, 747, 750
TspGWI	ACGGA	1 cut(s)	1041
TspRI	CASTG	5 cut(s)	369, 398, 919, 925, 991
VpaK11BI	GGWCC	2 cut(s)	178, 572
XapI	RAATTY	1 cut(s)	15
XceI	RCATGY	1 cut(s)	533
XmnI	GAANNNNTTC	1 cut(s)	1016

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.