Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007130.1

Orthogroup ID

OG0008086

Physical Location & Seq

Genomic Coordinates Forward (+)

89 .. 3327

Gene Structure 3239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007130.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

atgggtagagacttggttaggcccatcactgctcctctgtataaacgcgtccaagttcaaacggaggtgagtgaagaagaaagcaaactgagaacgatgaggtgtgccgggaaaggactcgggactcggtgcactggcccaccaacacggcggtgcggtcgttgtgaagccgttgcttattgctctgtatctcatcagattttgcactggcgtgatcataaagaagagtgtgaaaggttagaagaacagatggagcagatagatatcttgaacgagtttcctttcactttttctgaagaagctacagttcaggtttgtgaaaagcaggagacaaggtgttcattcttgagaaaaagaggggtccatcaaacgggaatgtggttgtatgaatgttgttgcggggaaccagttatgtcctttgattgttcaaggttaaataacgcttgggatctctcaaacaccctctgcccatgtaatgaacctatattcatgctttcaaagcatttaaccagttggaaggagtattatgagtggagatccatcccactgtattcacccgttgctttgcttcttcactggcctcttacaatttactatgccactcaagtagctggttcaggaagctggagacctggaatcaatggcaaattgcacatacactatcttggccctgagaaagagcttcttcagctttctgtcttctcggagctgcatgcacttttccctaacatggatgtgcatatagatcttattggaccttcaattccacaacatagggatggtgagaggattgagctgtgcaattatgctcattgccttgatagagattgcgtttgtaaatcctcaattgagagtgatgtacatactaatgaaacttcagctgttacattgcaacttaggaggggactttatcatgaacgttacacagatatagctaaggattcatctcctcatatagtaattgctccaaatgccggcattgctgcttattcaagctggttaccaacaattgagctgataaaggatatgaatataccatcagttttttccgattactgtgaagaagcttgtcatcttggagctcgttgcattagcagtgtcactggctgtcctctaaacattccgattcaattaaatccattcaggcaaccgatggtggtagaaaacagtgctctcgtcatcccttgctactcgaattgcttcctctacggaatgtcaaagtggtctgcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007276 GO:0007281 GO:0007283 GO:0007286 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0019899 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0042826 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044703 GO:0045892 GO:0045934 GO:0048232 GO:0048468 GO:0048515 GO:0048519 GO:0048523 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-MYND

Protein Analysis

410

Amino Acids

46.72

Weight (kDa)

5.98

Isoelectric Point (pI)

56.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70150
fragaria_vesca	FvH4_4g35220 FvH4_4g35220 FvH4_4g35220 FvH4_4g35220 FvH4_4g35220 FvH4_4g35220
malus_domestica	MD16G1084700.v1.1
prunus_persica	Prupe.1G261400_v2.0.a1 Prupe.1G261400_v2.0.a1 Prupe.1G261400_v2.0.a1
pyrus_communis	pycom13g07380
rosa_chinensis	RchiOBHm_Chr4g0444821
rosa_laevigata	RLG00000005799
rosa_multiflora	Rmu_sc0007130.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385310
rosa_rugosa	Rorug04G0355300
rosa_samantha	Rh4AG416700 Rh4BG428500 Rh4BG428600 Rh4CG443200 Rh4DG424200 Rh4DG424300
rosa_wichuraiana	Rw4G035720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	48
AciI	CCGC	3 cut(s)	151, 156, 399
AclI	AACGTT	1 cut(s)	919
AclWI	GGATC	2 cut(s)	456, 531
AcuI	CTGAAG	3 cut(s)	315, 671, 861
AfaI	GTAC	1 cut(s)	861
AfiI	CCNNNNNNNGG	3 cut(s)	370, 730, 974
AflIII	ACRYGT	1 cut(s)	46
AgsI	TTSAA	7 cut(s)	59, 271, 429, 498, 762, 993, 1130
AjnI	CCWGG	1 cut(s)	631
AleI	CACNNNNGTG	2 cut(s)	151, 210
Alw21I	GWGCWC	3 cut(s)	134, 1084, 1174
Alw26I	GTCTC	3 cut(s)	3, 323, 622
Alw44I	GTGCAC	1 cut(s)	130
AlwI	GGATC	2 cut(s)	456, 531
Ama87I	CYCGRG	1 cut(s)	119
AoxI	GGCC	4 cut(s)	20, 136, 578, 667
ApaLI	GTGCAC	1 cut(s)	130
ApeKI	GCWGC	2 cut(s)	709, 983
Asp700I	GAANNNNTTC	1 cut(s)	1199
AspS9I	GGNCC	5 cut(s)	21, 137, 361, 668, 755
AsuC2I	CCSGG	1 cut(s)	109
AsuHPI	GGTGA	3 cut(s)	79, 546, 794
AvaI	CYCGRG	1 cut(s)	119
AvaII	GGWCC	2 cut(s)	361, 755
BaeGI	GKGCMC	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	1084
BbsI	GAAGAC	1 cut(s)	691
Bbv12I	GWGCWC	3 cut(s)	134, 1084, 1174
BbvI	GCAGC	2 cut(s)	696, 970
BccI	CCATC	7 cut(s)	32, 244, 372, 548, 773, 1045, 1147
BceAI	ACGGC	2 cut(s)	155, 164
BciT130I	CCWGG	1 cut(s)	633
BclI	TGATCA	1 cut(s)	214
BcnI	CCSGG	1 cut(s)	109
BcoDI	GTCTC	3 cut(s)	3, 323, 622
BfmI	CTRYAG	1 cut(s)	303
BglII	AGATCT	1 cut(s)	745
BisI	GCNGC	2 cut(s)	710, 984
BlsI	GCNGC	2 cut(s)	711, 985
Bme1390I	CCNGG	2 cut(s)	109, 633
Bme18I	GGWCC	2 cut(s)	361, 755
BmeT110I	CYCGRG	1 cut(s)	119
BmgT120I	GGNCC	5 cut(s)	21, 137, 361, 668, 755
BmiI	GGNNCC	2 cut(s)	362, 405
BmrFI	CCNGG	2 cut(s)	109, 633
BpiI	GAAGAC	1 cut(s)	691
BpmI	CTGGAG	1 cut(s)	646
Bpu10I	CCTNAGC	1 cut(s)	936
BpuEI	CTTGAG	2 cut(s)	367, 588
BpuMI	CCSGG	1 cut(s)	109
BsaBI	GATNNNNATC	1 cut(s)	263
BsaI	GGTCTC	1 cut(s)	622
BsaXI	ACNNNNNCTCC	2 cut(s)	320, 350
Bsc4I	CCNNNNNNNGG	3 cut(s)	370, 730, 974
Bse118I	RCCGGY	1 cut(s)	974
Bse1I	ACTGG	6 cut(s)	139, 212, 407, 510, 581, 1108
Bse3DI	GCAATG	3 cut(s)	811, 887, 978
Bse8I	GATNNNNATC	1 cut(s)	263
BseBI	CCWGG	1 cut(s)	633
BseGI	GGATG	4 cut(s)	540, 739, 784, 1179
BseJI	GATNNNNATC	1 cut(s)	263
BseLI	CCNNNNNNNGG	3 cut(s)	370, 730, 974
BseMI	GCAATG	3 cut(s)	811, 887, 978
BseMII	CTCAG	2 cut(s)	80, 663
BseNI	ACTGG	6 cut(s)	139, 212, 407, 510, 581, 1108
BseRI	GAGGAG	2 cut(s)	24, 939
BseSI	GKGCMC	1 cut(s)	134
BseXI	GCAGC	2 cut(s)	696, 970
Bsh1236I	CGCG	1 cut(s)	48
Bsh1285I	CGRYCG	1 cut(s)	160
BshFI	GGCC	4 cut(s)	22, 138, 580, 669
BsiEI	CGRYCG	1 cut(s)	160
BsiHKAI	GWGCWC	3 cut(s)	134, 1084, 1174
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	2 cut(s)	108, 975
BslFI	GGGAC	2 cut(s)	136, 918
BslI	CCNNNNNNNGG	3 cut(s)	370, 730, 974
BsmAI	GTCTC	3 cut(s)	3, 323, 622
BsmFI	GGGAC	2 cut(s)	136, 918
BsnI	GGCC	4 cut(s)	22, 138, 580, 669
Bso31I	GGTCTC	1 cut(s)	622
BsoBI	CYCGRG	1 cut(s)	119
Bsp1286I	GDGCHC	3 cut(s)	134, 1084, 1174
Bsp1407I	TGTACA	1 cut(s)	859
Bsp143I	GATC	4 cut(s)	214, 448, 536, 745
BspACI	CCGC	3 cut(s)	151, 156, 399
BspANI	GGCC	4 cut(s)	22, 138, 580, 669
BspCNI	CTCAG	2 cut(s)	81, 664
BspFNI	CGCG	1 cut(s)	48
BspHI	TCATGA	1 cut(s)	913
BspLI	GGNNCC	2 cut(s)	362, 405
BspPI	GGATC	2 cut(s)	456, 531
BspTNI	GGTCTC	1 cut(s)	622
BsrDI	GCAATG	3 cut(s)	811, 887, 978
BsrFI	RCCGGY	1 cut(s)	974
BsrGI	TGTACA	1 cut(s)	859
BsrI	ACTGG	6 cut(s)	139, 212, 407, 510, 581, 1108
BssAI	RCCGGY	1 cut(s)	974
BssMI	GATC	4 cut(s)	214, 448, 536, 745
Bst2UI	CCWGG	1 cut(s)	633
Bst4CI	ACNGT	4 cut(s)	307, 549, 1058, 1169
Bst6I	CTCTTC	1 cut(s)	219
BstAUI	TGTACA	1 cut(s)	859
BstC8I	GCNNGC	2 cut(s)	714, 976
BstDEI	CTNAG	4 cut(s)	89, 672, 896, 936
BstEII	GGTNACC	1 cut(s)	999
BstF5I	GGATG	4 cut(s)	540, 739, 784, 1179
BstFNI	CGCG	1 cut(s)	48
BstKTI	GATC	4 cut(s)	217, 451, 539, 748
BstMAI	GTCTC	3 cut(s)	3, 323, 622
BstMBI	GATC	4 cut(s)	214, 448, 536, 745
BstMCI	CGRYCG	1 cut(s)	160
BstMWI	GCNNNNNNNGC	4 cut(s)	499, 688, 971, 980
BstNI	CCWGG	1 cut(s)	633
BstNSI	RCATGY	1 cut(s)	716
BstPI	GGTNACC	1 cut(s)	999
BstSCI	CCNGG	2 cut(s)	107, 631
BstSFI	CTRYAG	1 cut(s)	303
BstSLI	GKGCMC	1 cut(s)	134
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	2 cut(s)	696, 970
BstV2I	GAAGAC	1 cut(s)	691
BstX2I	RGATCY	3 cut(s)	448, 536, 745
BstYI	RGATCY	3 cut(s)	448, 536, 745
BsuRI	GGCC	4 cut(s)	22, 138, 580, 669
BtsCI	GGATG	4 cut(s)	540, 739, 784, 1179
BtsI	GCAGTG	2 cut(s)	27, 1102
BtsIMutI	CAGTG	8 cut(s)	27, 132, 205, 545, 574, 1101, 1102, 1174
Cac8I	GCNNGC	2 cut(s)	714, 976
CciI	TCATGA	1 cut(s)	913
Cfr10I	RCCGGY	1 cut(s)	974
Cfr13I	GGNCC	5 cut(s)	21, 137, 361, 668, 755
CseI	GACGC	1 cut(s)	37
Csp6I	GTAC	1 cut(s)	860
CviAII	CATG	5 cut(s)	471, 490, 713, 730, 914
CviQI	GTAC	1 cut(s)	860
DdeI	CTNAG	4 cut(s)	89, 672, 896, 936
DpnI	GATC	4 cut(s)	216, 450, 538, 747
DpnII	GATC	4 cut(s)	214, 448, 536, 745
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
Ecl136II	GAGCTC	1 cut(s)	1082
Eco24I	GRGCYC	1 cut(s)	1084
Eco31I	GGTCTC	1 cut(s)	622
Eco32I	GATATC	1 cut(s)	265
Eco47I	GGWCC	2 cut(s)	361, 755
Eco53kI	GAGCTC	1 cut(s)	1082
Eco57I	CTGAAG	3 cut(s)	315, 671, 861
Eco88I	CYCGRG	1 cut(s)	119
Eco91I	GGTNACC	1 cut(s)	999
EcoICRI	GAGCTC	1 cut(s)	1082
EcoO65I	GGTNACC	1 cut(s)	999
EcoRII	CCWGG	1 cut(s)	631
EcoRV	GATATC	1 cut(s)	265
EcoT38I	GRGCYC	1 cut(s)	1084
FaeI	CATG	5 cut(s)	474, 493, 716, 733, 917
FalI	AAGNNNNNCTT	2 cut(s)	669, 701
FaqI	GGGAC	2 cut(s)	136, 918
FatI	CATG	5 cut(s)	470, 489, 712, 729, 913
FauI	CCCGC	1 cut(s)	392
FbaI	TGATCA	1 cut(s)	214
Fnu4HI	GCNGC	2 cut(s)	710, 984
FokI	GGATG	4 cut(s)	527, 746, 791, 1166
FriOI	GRGCYC	1 cut(s)	1084
Fsp4HI	GCNGC	2 cut(s)	710, 984
GluI	GCNGC	2 cut(s)	710, 984
GsuI	CTGGAG	1 cut(s)	646
HaeIII	GGCC	4 cut(s)	22, 138, 580, 669
HapII	CCGG	2 cut(s)	108, 975
HgaI	GACGC	1 cut(s)	37
Hin1II	CATG	5 cut(s)	474, 493, 716, 733, 917
HindIII	AAGCTT	1 cut(s)	1065
HinfI	GANTC	5 cut(s)	117, 124, 636, 941, 1126
HpaII	CCGG	2 cut(s)	108, 975
HphI	GGTGA	3 cut(s)	79, 546, 794
Hpy166II	GTNNAC	1 cut(s)	132
Hpy188I	TCNGA	5 cut(s)	198, 295, 706, 1051, 1125
Hpy188III	TCNNGA	5 cut(s)	121, 268, 346, 618, 914
Hpy8I	GTNNAC	1 cut(s)	132
HpyAV	CCTTC	2 cut(s)	511, 768
HpyCH4III	ACNGT	4 cut(s)	307, 549, 1058, 1169
HpyCH4IV	ACGT	1 cut(s)	919
HpyCH4V	TGCA	9 cut(s)	132, 205, 652, 712, 716, 739, 801, 892, 1089
HpyF10VI	GCNNNNNNNGC	4 cut(s)	499, 688, 971, 980
HpyF3I	CTNAG	4 cut(s)	89, 672, 896, 936
HpySE526I	ACGT	1 cut(s)	919
Hsp92II	CATG	5 cut(s)	474, 493, 716, 733, 917
KroI	GCCGGC	1 cut(s)	974
KroNI	GCCGGC	1 cut(s)	976
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	4 cut(s)	214, 448, 536, 745
LmnI	GCTCC	5 cut(s)	37, 253, 706, 970, 1079
Lsp1109I	GCAGC	2 cut(s)	696, 970
MaeII	ACGT	1 cut(s)	919
MaeIII	GTNAC	4 cut(s)	883, 920, 999, 1099
MalI	GATC	4 cut(s)	216, 450, 538, 747
MboI	GATC	4 cut(s)	214, 448, 536, 745
MboII	GAAGA	9 cut(s)	86, 89, 236, 254, 308, 563, 677, 691, 1073
MfeI	CAATTG	2 cut(s)	846, 1008
MflI	RGATCY	3 cut(s)	448, 536, 745
MhlI	GDGCHC	3 cut(s)	134, 1084, 1174
MluCI	AATT	9 cut(s)	588, 647, 762, 802, 846, 960, 1008, 1130, 1195
MluI	ACGCGT	1 cut(s)	46
MlyI	GAGTC	2 cut(s)	111, 118
MmeI	TCCRAC	1 cut(s)	494
MroNI	GCCGGC	1 cut(s)	974
MroXI	GAANNNNTTC	1 cut(s)	1199
MseI	TTAA	3 cut(s)	434, 506, 1133
MslI	CAYNNNNRTG	5 cut(s)	151, 210, 734, 777, 867
MspA1I	CMGCKG	1 cut(s)	881
MspI	CCGG	2 cut(s)	108, 975
MspR9I	CCNGG	2 cut(s)	109, 633
MunI	CAATTG	2 cut(s)	846, 1008
MvaI	CCWGG	1 cut(s)	633
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	4 cut(s)	499, 688, 971, 980
NaeI	GCCGGC	1 cut(s)	976
NciI	CCSGG	1 cut(s)	109
NdeII	GATC	4 cut(s)	214, 448, 536, 745
NgoMIV	GCCGGC	1 cut(s)	974
NlaIII	CATG	5 cut(s)	474, 493, 716, 733, 917
NlaIV	GGNNCC	2 cut(s)	362, 405
NmuCI	GTSAC	1 cut(s)	1099
NspI	RCATGY	1 cut(s)	716
OliI	CACNNNNGTG	2 cut(s)	151, 210
PaeI	GCATGC	1 cut(s)	716
PagI	TCATGA	1 cut(s)	913
PdiI	GCCGGC	1 cut(s)	976
PdmI	GAANNNNTTC	1 cut(s)	1199
PfeI	GAWTC	3 cut(s)	636, 941, 1126
PkrI	GCNGC	2 cut(s)	711, 985
PleI	GAGTC	2 cut(s)	111, 118
PpsI	GAGTC	2 cut(s)	111, 118
Psp124BI	GAGCTC	1 cut(s)	1084
Psp1406I	AACGTT	1 cut(s)	919
Psp6I	CCWGG	1 cut(s)	631
PspEI	GGTNACC	1 cut(s)	999
PspGI	CCWGG	1 cut(s)	631
PspN4I	GGNNCC	2 cut(s)	362, 405
PspPI	GGNCC	5 cut(s)	21, 137, 361, 668, 755
PsuI	RGATCY	3 cut(s)	448, 536, 745
PvuII	CAGCTG	1 cut(s)	881
RsaI	GTAC	1 cut(s)	861
RsaNI	GTAC	1 cut(s)	860
RseI	CAYNNNNRTG	5 cut(s)	151, 210, 734, 777, 867
SacI	GAGCTC	1 cut(s)	1084
SaqAI	TTAA	3 cut(s)	434, 506, 1133
SatI	GCNGC	2 cut(s)	710, 984
Sau3AI	GATC	4 cut(s)	214, 448, 536, 745
Sau96I	GGNCC	5 cut(s)	21, 137, 361, 668, 755
SchI	GAGTC	2 cut(s)	111, 118
ScrFI	CCNGG	2 cut(s)	109, 633
SduI	GDGCHC	3 cut(s)	134, 1084, 1174
SfcI	CTRYAG	1 cut(s)	303
SinI	GGWCC	2 cut(s)	361, 755
SmiMI	CAYNNNNRTG	5 cut(s)	151, 210, 734, 777, 867
SmlI	CTYRAG	2 cut(s)	346, 603
SmoI	CTYRAG	2 cut(s)	346, 603
SphI	GCATGC	1 cut(s)	716
Sse9I	AATT	9 cut(s)	588, 647, 762, 802, 846, 960, 1008, 1130, 1195
SsiI	CCGC	3 cut(s)	151, 156, 399
SstI	GAGCTC	1 cut(s)	1084
StyD4I	CCNGG	2 cut(s)	107, 631
TaaI	ACNGT	4 cut(s)	307, 549, 1058, 1169
TaiI	ACGT	1 cut(s)	922
TaqI	TCGA	1 cut(s)	1193
TasI	AATT	9 cut(s)	588, 647, 762, 802, 846, 960, 1008, 1130, 1195
TatI	WGTACW	1 cut(s)	859
TfiI	GAWTC	3 cut(s)	636, 941, 1126
Tru1I	TTAA	3 cut(s)	434, 506, 1133
Tru9I	TTAA	3 cut(s)	434, 506, 1133
TscAI	CASTG	8 cut(s)	34, 139, 212, 552, 581, 1102, 1108, 1174
TseFI	GTSAC	1 cut(s)	1099
TseI	GCWGC	2 cut(s)	709, 983
Tsp45I	GTSAC	1 cut(s)	1099
TspDTI	ATGAA	8 cut(s)	330, 402, 478, 492, 885, 930, 933, 1043
TspGWI	ACGGA	2 cut(s)	77, 1224
TspRI	CASTG	8 cut(s)	34, 139, 212, 552, 581, 1102, 1108, 1174
VneI	GTGCAC	1 cut(s)	130
VpaK11BI	GGWCC	2 cut(s)	361, 755
XceI	RCATGY	1 cut(s)	716
XmnI	GAANNNNTTC	1 cut(s)	1199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.