Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008086

Physical Location & Seq

Genomic Coordinates Reverse (-)

27019455 .. 27023167

Gene Structure 3713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G261400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGAGTGTGCCGGGAAGAGACAGGGGACTCGGTGCACAGGACCAGTCACAAGAAGATGTGCTCGCTGTGGAGCTGTTGCTTATTGCTCTGTTTCTCATCAGATTGTGCATTGGCCTGCTCATAAAGAAGAGTGCGGAAGGTTGGAGCAACATATGAAGCATATGGATATCTTGAATGAGTTTCCTTTCACTTTTACTCAAGAAGCAACTGTTCAGGTGTGTGAAAAGCTGGAGACTAGGTGTTCAGTCTTGAAAAAAAGAGGGGTCCATCAAATGGGAATGTGGTTGTATGAATGTTGTTGTGGGAATTCAGTTATTTCCTTTGATTGTTCAAGGTTAAATAATTCTTGGGATCTCTCAAATACCTTTTGCCCATGTACTGAGCCTTTATCTATGATATCAAAGCATTTAACCAGTTGGAAGGAGTACTATGAATGGAGGTCCATCCCACTGCATTCACCTGTTTCTTTGCTACTCCACCGGCCTCTTACAATTTACTATGCCACTCAAGTAGCTGGTTTAGGAAGGTGGACTTCTGGAATCAGCCACAAATTGCACATACACTATCTTGGCCCTGAGAAAGAGCTTCTTCAGCTTTCTGTCTTCTCAGAGTTGCATGCACTTTTTCCTAATGTTCATGTGCATATAGAGCTTGTTGGGCCTGCAATTCCACAACATAGAGATGGTGAGATGATCGAGCTATGCAATTATGCCCATTGCCTTGATAGAGATTGCGTATGTAAATCCTCAAGTGAGACTGTCAGCTGGGATGCACATACTAGTAAACCTTCAACAGTTACATTGCAACTTAGAAGCGGCTTTTATCATGACCGTTACAAGGATATAGCTCAGGATTCATCTCCGCACTTAATTGTTGCTCCAAATGCAGGAATTGCTGCTTATTCAAGCTGGCCACCAACTATTGAGCTAATAAAGGATATGGATATCCCAGCAGTTTTTTCCGATTACTGCAAAGAAGCTTGTCATCTTGGAGCTAGCTGCATAACTGGTGTAACTGGCTGTCCTCTCAATATCCCTATTCAATTAAATCCATTCAGGCAACCAATGGTGGTGGAAGACAGCGTTCTCTGGCTTCCTTGCTACTCGAATTGCTTCCTCTACGGGATGTCAAAGTGGTCTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-MYND

Protein Analysis

382

Amino Acids

43.1

Weight (kDa)

6.71

Isoelectric Point (pI)

55.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70150
fragaria_vesca	FvH4_4g35220 FvH4_4g35220 FvH4_4g35220 FvH4_4g35220 FvH4_4g35220 FvH4_4g35220
malus_domestica	MD16G1084700.v1.1
prunus_persica	Prupe.1G261400_v2.0.a1 Prupe.1G261400_v2.0.a1 Prupe.1G261400_v2.0.a1
pyrus_communis	pycom13g07380
rosa_chinensis	RchiOBHm_Chr4g0444821
rosa_laevigata	RLG00000005799
rosa_multiflora	Rmu_sc0007130.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385310
rosa_rugosa	Rorug04G0355300
rosa_samantha	Rh4AG416700 Rh4BG428500 Rh4BG428600 Rh4CG443200 Rh4DG424200 Rh4DG424300
rosa_wichuraiana	Rw4G035720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	274
AciI	CCGC	3 cut(s)	135, 816, 863
AclWI	GGATC	1 cut(s)	360
AcoI	YGGCCR	1 cut(s)	911
AcsI	RAATTY	1 cut(s)	307
AcuI	CTGAAG	1 cut(s)	575
AfaI	GTAC	2 cut(s)	379, 428
AfiI	CCNNNNNNNGG	3 cut(s)	274, 838, 887
AgsI	TTSAA	6 cut(s)	175, 253, 333, 792, 906, 1043
AhlI	ACTAGT	1 cut(s)	779
Alw21I	GWGCWC	2 cut(s)	38, 64
Alw26I	GTCTC	3 cut(s)	13, 227, 749
Alw44I	GTGCAC	1 cut(s)	34
AlwI	GGATC	1 cut(s)	360
AoxI	GGCC	5 cut(s)	113, 482, 571, 659, 911
ApaLI	GTGCAC	1 cut(s)	34
ApeKI	GCWGC	2 cut(s)	896, 999
ApoI	RAATTY	1 cut(s)	307
Asp700I	GAANNNNTTC	1 cut(s)	1112
AspS9I	GGNCC	5 cut(s)	41, 265, 441, 572, 659
AsuC2I	CCSGG	1 cut(s)	13
AsuHPI	GGTGA	2 cut(s)	450, 698
AsuNHI	GCTAGC	1 cut(s)	995
AvaII	GGWCC	3 cut(s)	41, 265, 441
BaeGI	GKGCMC	1 cut(s)	38
BalI	TGGCCA	1 cut(s)	913
BbsI	GAAGAC	2 cut(s)	595, 1083
Bbv12I	GWGCWC	2 cut(s)	38, 64
BbvI	GCAGC	2 cut(s)	883, 986
BccI	CCATC	3 cut(s)	276, 452, 677
BcnI	CCSGG	1 cut(s)	13
BcoDI	GTCTC	3 cut(s)	13, 227, 749
BcuI	ACTAGT	1 cut(s)	779
BfaI	CTAG	3 cut(s)	237, 780, 996
BisI	GCNGC	3 cut(s)	817, 897, 1000
BlsI	GCNGC	3 cut(s)	818, 898, 1001
BmcAI	AGTACT	1 cut(s)	428
Bme1390I	CCNGG	1 cut(s)	13
Bme18I	GGWCC	3 cut(s)	41, 265, 441
BmgT120I	GGNCC	5 cut(s)	41, 265, 441, 572, 659
BmiI	GGNNCC	1 cut(s)	266
BmrFI	CCNGG	1 cut(s)	13
BmsI	GCATC	1 cut(s)	760
BmtI	GCTAGC	1 cut(s)	999
BpiI	GAAGAC	2 cut(s)	595, 1083
BpmI	CTGGAG	1 cut(s)	251
Bpu10I	CCTNAGC	1 cut(s)	849
BpuEI	CTTGAG	3 cut(s)	183, 492, 733
BpuMI	CCSGG	1 cut(s)	13
BsaXI	ACNNNNNCTCC	2 cut(s)	224, 254
Bsc4I	CCNNNNNNNGG	3 cut(s)	274, 838, 887
Bse118I	RCCGGY	1 cut(s)	480
Bse1I	ACTGG	4 cut(s)	44, 414, 1012, 1021
Bse3DI	GCAATG	2 cut(s)	715, 800
BseGI	GGATG	3 cut(s)	444, 775, 1131
BseLI	CCNNNNNNNGG	3 cut(s)	274, 838, 887
BseMI	GCAATG	2 cut(s)	715, 800
BseMII	CTCAG	4 cut(s)	372, 567, 621, 863
BseNI	ACTGG	4 cut(s)	44, 414, 1012, 1021
BseSI	GKGCMC	1 cut(s)	38
BseXI	GCAGC	2 cut(s)	883, 986
BseYI	CCCAGC	2 cut(s)	765, 949
BshFI	GGCC	5 cut(s)	115, 484, 573, 661, 913
BsiHKAI	GWGCWC	2 cut(s)	38, 64
BsiSI	CCGG	2 cut(s)	12, 481
BslFI	GGGAC	1 cut(s)	40
BslI	CCNNNNNNNGG	3 cut(s)	274, 838, 887
BsmAI	GTCTC	3 cut(s)	13, 227, 749
BsmFI	GGGAC	1 cut(s)	40
BsmI	GAATGC	1 cut(s)	454
BsnI	GGCC	5 cut(s)	115, 484, 573, 661, 913
Bsp1286I	GDGCHC	2 cut(s)	38, 64
Bsp143I	GATC	2 cut(s)	352, 693
BspACI	CCGC	3 cut(s)	135, 816, 863
BspANI	GGCC	5 cut(s)	115, 484, 573, 661, 913
BspCNI	CTCAG	4 cut(s)	373, 568, 620, 862
BspHI	TCATGA	1 cut(s)	826
BspLI	GGNNCC	1 cut(s)	266
BspOI	GCTAGC	1 cut(s)	999
BspPI	GGATC	1 cut(s)	360
BsrDI	GCAATG	2 cut(s)	715, 800
BsrFI	RCCGGY	1 cut(s)	480
BsrI	ACTGG	4 cut(s)	44, 414, 1012, 1021
BssAI	RCCGGY	1 cut(s)	480
BssMI	GATC	2 cut(s)	352, 693
Bst4CI	ACNGT	4 cut(s)	211, 760, 796, 833
Bst6I	CTCTTC	2 cut(s)	11, 123
BstAPI	GCANNNNNTGC	1 cut(s)	893
BstC8I	GCNNGC	6 cut(s)	64, 117, 618, 663, 911, 997
BstDEI	CTNAG	5 cut(s)	381, 576, 607, 809, 849
BstF5I	GGATG	3 cut(s)	444, 775, 1131
BstKTI	GATC	2 cut(s)	355, 696
BstMAI	GTCTC	3 cut(s)	13, 227, 749
BstMBI	GATC	2 cut(s)	352, 693
BstMWI	GCNNNNNNNGC	5 cut(s)	592, 649, 658, 884, 893
BstNSI	RCATGY	1 cut(s)	620
BstSCI	CCNGG	1 cut(s)	11
BstSLI	GKGCMC	1 cut(s)	38
BstV1I	GCAGC	2 cut(s)	883, 986
BstV2I	GAAGAC	2 cut(s)	595, 1083
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BsuRI	GGCC	5 cut(s)	115, 484, 573, 661, 913
BtsCI	GGATG	3 cut(s)	444, 775, 1131
BtsI	GCAGTG	1 cut(s)	449
BtsIMutI	CAGTG	1 cut(s)	449
Cac8I	GCNNGC	6 cut(s)	64, 117, 618, 663, 911, 997
CciI	TCATGA	1 cut(s)	826
Cfr10I	RCCGGY	1 cut(s)	480
Cfr13I	GGNCC	5 cut(s)	41, 265, 441, 572, 659
Csp6I	GTAC	2 cut(s)	378, 427
CspCI	CAANNNNNGTGG	2 cut(s)	1053, 1088
CviAII	CATG	4 cut(s)	375, 617, 638, 827
CviQI	GTAC	2 cut(s)	378, 427
DdeI	CTNAG	5 cut(s)	381, 576, 607, 809, 849
DpnI	GATC	2 cut(s)	354, 695
DpnII	GATC	2 cut(s)	352, 693
EaeI	YGGCCR	1 cut(s)	911
Eam1104I	CTCTTC	2 cut(s)	11, 123
EarI	CTCTTC	2 cut(s)	11, 123
Eco32I	GATATC	3 cut(s)	169, 399, 946
Eco47I	GGWCC	3 cut(s)	41, 265, 441
Eco57I	CTGAAG	1 cut(s)	575
EcoRI	GAATTC	1 cut(s)	307
EcoRV	GATATC	3 cut(s)	169, 399, 946
FaeI	CATG	4 cut(s)	378, 620, 641, 830
FalI	AAGNNNNNCTT	4 cut(s)	517, 549, 573, 605
FaqI	GGGAC	1 cut(s)	40
FatI	CATG	4 cut(s)	374, 616, 637, 826
FauNDI	CATATG	2 cut(s)	153, 162
Fnu4HI	GCNGC	3 cut(s)	817, 897, 1000
FokI	GGATG	3 cut(s)	431, 782, 1138
Fsp4HI	GCNGC	3 cut(s)	817, 897, 1000
FspBI	CTAG	3 cut(s)	237, 780, 996
GluI	GCNGC	3 cut(s)	817, 897, 1000
GsaI	CCCAGC	2 cut(s)	769, 953
GsuI	CTGGAG	1 cut(s)	251
HaeIII	GGCC	5 cut(s)	115, 484, 573, 661, 913
HapII	CCGG	2 cut(s)	12, 481
Hin1II	CATG	4 cut(s)	378, 620, 641, 830
HindIII	AAGCTT	1 cut(s)	978
HinfI	GANTC	3 cut(s)	28, 540, 854
HpaII	CCGG	2 cut(s)	12, 481
HphI	GGTGA	2 cut(s)	450, 698
Hpy166II	GTNNAC	3 cut(s)	36, 531, 785
Hpy188I	TCNGA	3 cut(s)	102, 610, 964
Hpy188III	TCNNGA	6 cut(s)	172, 200, 250, 537, 827, 851
Hpy8I	GTNNAC	3 cut(s)	36, 531, 785
HpyAV	CCTTC	4 cut(s)	132, 415, 519, 798
HpyCH4III	ACNGT	4 cut(s)	211, 760, 796, 833
HpyF10VI	GCNNNNNNNGC	5 cut(s)	592, 649, 658, 884, 893
HpyF3I	CTNAG	5 cut(s)	381, 576, 607, 809, 849
Hsp92II	CATG	4 cut(s)	378, 620, 641, 830
Kzo9I	GATC	2 cut(s)	352, 693
LmnI	GCTCC	4 cut(s)	71, 145, 883, 992
Lsp1109I	GCAGC	2 cut(s)	883, 986
LweI	GCATC	1 cut(s)	760
MaeI	CTAG	3 cut(s)	237, 780, 996
MaeIII	GTNAC	4 cut(s)	46, 796, 833, 1012
MalI	GATC	2 cut(s)	354, 695
MboI	GATC	2 cut(s)	352, 693
MboII	GAAGA	6 cut(s)	28, 66, 140, 581, 595, 1088
MflI	RGATCY	1 cut(s)	352
MhlI	GDGCHC	2 cut(s)	38, 64
MlsI	TGGCCA	1 cut(s)	913
MluNI	TGGCCA	1 cut(s)	913
MlyI	GAGTC	1 cut(s)	22
MmeI	TCCRAC	2 cut(s)	123, 398
MnlI	CCTC	6 cut(s)	254, 432, 495, 757, 1035, 1127
Mox20I	TGGCCA	1 cut(s)	913
MroXI	GAANNNNTTC	1 cut(s)	1112
MscI	TGGCCA	1 cut(s)	913
MseI	TTAA	4 cut(s)	338, 410, 869, 1046
MslI	CAYNNNNRTG	1 cut(s)	681
Msp20I	TGGCCA	1 cut(s)	913
MspA1I	CMGCKG	1 cut(s)	765
MspI	CCGG	2 cut(s)	12, 481
MspR9I	CCNGG	1 cut(s)	13
Mva1269I	GAATGC	1 cut(s)	454
MwoI	GCNNNNNNNGC	5 cut(s)	592, 649, 658, 884, 893
NciI	CCSGG	1 cut(s)	13
NdeI	CATATG	2 cut(s)	153, 162
NdeII	GATC	2 cut(s)	352, 693
NheI	GCTAGC	1 cut(s)	995
NlaIII	CATG	4 cut(s)	378, 620, 641, 830
NlaIV	GGNNCC	1 cut(s)	266
NmuCI	GTSAC	1 cut(s)	46
NspI	RCATGY	1 cut(s)	620
PaeI	GCATGC	1 cut(s)	620
PagI	TCATGA	1 cut(s)	826
PctI	GAATGC	1 cut(s)	454
PdmI	GAANNNNTTC	1 cut(s)	1112
PfeI	GAWTC	2 cut(s)	540, 854
PflMI	CCANNNNNTGG	1 cut(s)	274
PkrI	GCNGC	3 cut(s)	818, 898, 1001
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
PspFI	CCCAGC	2 cut(s)	765, 949
PspN4I	GGNNCC	1 cut(s)	266
PspPI	GGNCC	5 cut(s)	41, 265, 441, 572, 659
PsuI	RGATCY	1 cut(s)	352
PvuII	CAGCTG	1 cut(s)	765
RsaI	GTAC	2 cut(s)	379, 428
RsaNI	GTAC	2 cut(s)	378, 427
RseI	CAYNNNNRTG	1 cut(s)	681
SaqAI	TTAA	4 cut(s)	338, 410, 869, 1046
SatI	GCNGC	3 cut(s)	817, 897, 1000
Sau3AI	GATC	2 cut(s)	352, 693
Sau96I	GGNCC	5 cut(s)	41, 265, 441, 572, 659
ScaI	AGTACT	1 cut(s)	428
SchI	GAGTC	1 cut(s)	22
ScrFI	CCNGG	1 cut(s)	13
SduI	GDGCHC	2 cut(s)	38, 64
SfaNI	GCATC	1 cut(s)	760
SinI	GGWCC	3 cut(s)	41, 265, 441
SmiMI	CAYNNNNRTG	1 cut(s)	681
SmlI	CTYRAG	3 cut(s)	198, 507, 748
SmoI	CTYRAG	3 cut(s)	198, 507, 748
SpeI	ACTAGT	1 cut(s)	779
SphI	GCATGC	1 cut(s)	620
SsiI	CCGC	3 cut(s)	135, 816, 863
SspMI	CTAG	3 cut(s)	237, 780, 996
StyD4I	CCNGG	1 cut(s)	11
TaaI	ACNGT	4 cut(s)	211, 760, 796, 833
TaqI	TCGA	2 cut(s)	696, 1106
TatI	WGTACW	2 cut(s)	377, 426
TauI	GCSGC	1 cut(s)	819
TfiI	GAWTC	2 cut(s)	540, 854
Tru1I	TTAA	4 cut(s)	338, 410, 869, 1046
Tru9I	TTAA	4 cut(s)	338, 410, 869, 1046
TscAI	CASTG	1 cut(s)	456
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	2 cut(s)	896, 999
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	5 cut(s)	170, 306, 447, 626, 846
TspRI	CASTG	1 cut(s)	456
Van91I	CCANNNNNTGG	1 cut(s)	274
VneI	GTGCAC	1 cut(s)	34
VpaK11BI	GGWCC	3 cut(s)	41, 265, 441
XapI	RAATTY	1 cut(s)	307
XceI	RCATGY	1 cut(s)	620
XmnI	GAANNNNTTC	1 cut(s)	1112
XspI	CTAG	3 cut(s)	237, 780, 996
ZrmI	AGTACT	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.