Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0008086

Physical Location & Seq

Genomic Coordinates Forward (+)

1857474 .. 1860651

Gene Structure 3178 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005799

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGAGTGTGCCGGGAAAGGACTCGGGACTCGGTGCACTGGCCCACCAACACGGCGGTGCGGTCGTTGTGAAGCCGTTGCTTATTGCTCTGTATCTCATCAGATTTTGCATTGGCGTGATCATAAAGAAGAGTGCGAAAGGTTAGAAGAACAGATGGAGCAGATAGATATCTTGAACGAGTTTCCTTTCACTTTTTCTGAAGAAGCTACAGTTCAGGTTTGTGAAAAGCAGGAGACAAGGTGTTCATTCTTGAGAAAAAGAGGGGTACATCAAACGGGAATGTGGTTGTATGAATGTTGTTGCGGGGAACCAGTTATGTCCTTTGATCGTTCAAGGTTAAATAACGCTTGGGATCTCTCAAACACCCTCTGCCCATGTAATGAACCTATATTCATGCTTTCAAAGCATTTAACCAGTTGGAAGGAGTACTATGAGTGGAGATCCATCCCACTGCATTCACCTGTTGCTTTGCTTCTTCACTGGCCTCTTACAATTTACTGTGCCACTCAAGTAGCTGGTTCAGGAAGCTGGAGACCTGGAATCAATGGCAAATTGCACATACACTATCTTGGCCCTGAGAAAGAGCTTCTTCAGCTTTCTGTCTTCTCAGAGCTGCTTGCACTTTTCCCTACCATGGATGTGCATATAGATCTTATTGGACCTTCAATTCCACAACATAGGGATGGTGAGAGGATCGAGCTATGCAATTATGCTCATTGCCTTCACAGAGATTGCATTTGTAAATCCTCAATTGAGAGTGATGTACATACTAATGAAACTTCAGCTGTTACATTGCAACTTAGGAGGGGACTTTATCATGAACGTTACACAGATATAGCTAAGGATTCATCTCCTCATATAGTAATTGCTCCAAATGCCGGCATTGCTGCTTATTCAAGCTGGTTACCAACGATTGAGCTGATAAAGGATATGAATATACCAGCAGTTTTTTCCGATTACTGTGAAGAAGCTTGTCATCTTGGAGGTCGTTGCATTAGCAGTGTCACTGGCTGTCCTCTAAACATTCCGATTCAATTAAATCCATTCAGGCAACCGATGGTGGTAGAAAACAGTGCTCTCGTCATCCCTTGCTACTCGAATTGCTTCCTCTATGGAATGTCAAAGTGCTCCTTTAGAGGCAAACGGTGTCGTTTACGACTAATCCGGCGGACATCACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007276 GO:0007281 GO:0007283 GO:0007286 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0019899 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0042826 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044703 GO:0045892 GO:0045934 GO:0048232 GO:0048468 GO:0048515 GO:0048519 GO:0048523 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-MYND

Protein Analysis

394

Amino Acids

44.79

Weight (kDa)

6.62

Isoelectric Point (pI)

58.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-MYND	PF01753	11 - 45	7.9e-09	MYND finger
MSS51_C	PF20179	162 - 354	1.6e-33	MSS51 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70150
fragaria_vesca	FvH4_4g35220 FvH4_4g35220 FvH4_4g35220 FvH4_4g35220 FvH4_4g35220 FvH4_4g35220
malus_domestica	MD16G1084700.v1.1
prunus_persica	Prupe.1G261400_v2.0.a1 Prupe.1G261400_v2.0.a1 Prupe.1G261400_v2.0.a1
pyrus_communis	pycom13g07380
rosa_chinensis	RchiOBHm_Chr4g0444821
rosa_laevigata	RLG00000005799
rosa_multiflora	Rmu_sc0007130.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385310
rosa_rugosa	Rorug04G0355300
rosa_samantha	Rh4AG416700 Rh4BG428500 Rh4BG428600 Rh4CG443200 Rh4DG424200 Rh4DG424300
rosa_wichuraiana	Rw4G035720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	55, 60, 303, 1168
AclI	AACGTT	1 cut(s)	823
AclWI	GGATC	3 cut(s)	360, 435, 701
AcuI	CTGAAG	3 cut(s)	219, 575, 765
AfaI	GTAC	3 cut(s)	267, 428, 765
AfiI	CCNNNNNNNGG	2 cut(s)	634, 878
AgsI	TTSAA	6 cut(s)	175, 333, 402, 666, 897, 1034
AjnI	CCWGG	1 cut(s)	535
AleI	CACNNNNGTG	1 cut(s)	55
Alw21I	GWGCWC	3 cut(s)	38, 1078, 1130
Alw26I	GTCTC	2 cut(s)	227, 526
Alw44I	GTGCAC	1 cut(s)	34
AlwI	GGATC	3 cut(s)	360, 435, 701
Ama87I	CYCGRG	1 cut(s)	23
AoxI	GGCC	3 cut(s)	40, 482, 571
ApaLI	GTGCAC	1 cut(s)	34
ApeKI	GCWGC	2 cut(s)	613, 887
Asp700I	GAANNNNTTC	1 cut(s)	1103
AspS9I	GGNCC	3 cut(s)	41, 572, 659
AsuC2I	CCSGG	1 cut(s)	13
AsuHPI	GGTGA	2 cut(s)	450, 698
AvaI	CYCGRG	1 cut(s)	23
AvaII	GGWCC	1 cut(s)	659
BaeGI	GKGCMC	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	595
Bbv12I	GWGCWC	3 cut(s)	38, 1078, 1130
BbvI	GCAGC	2 cut(s)	600, 874
BccI	CCATC	4 cut(s)	148, 452, 677, 1051
BceAI	ACGGC	2 cut(s)	59, 68
BciT130I	CCWGG	1 cut(s)	537
BclI	TGATCA	1 cut(s)	118
BcnI	CCSGG	1 cut(s)	13
BcoDI	GTCTC	2 cut(s)	227, 526
BfmI	CTRYAG	1 cut(s)	207
BglII	AGATCT	1 cut(s)	649
BisI	GCNGC	2 cut(s)	614, 888
BlsI	GCNGC	2 cut(s)	615, 889
BmcAI	AGTACT	1 cut(s)	428
Bme1390I	CCNGG	2 cut(s)	13, 537
Bme18I	GGWCC	1 cut(s)	659
BmeT110I	CYCGRG	1 cut(s)	23
BmgT120I	GGNCC	3 cut(s)	41, 572, 659
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	2 cut(s)	13, 537
BpiI	GAAGAC	1 cut(s)	595
BpmI	CTGGAG	1 cut(s)	550
Bpu10I	CCTNAGC	1 cut(s)	840
BpuEI	CTTGAG	2 cut(s)	271, 492
BpuMI	CCSGG	1 cut(s)	13
BsaBI	GATNNNNATC	1 cut(s)	167
BsaI	GGTCTC	1 cut(s)	526
BsaJI	CCNNGG	1 cut(s)	633
BsaXI	ACNNNNNCTCC	2 cut(s)	224, 254
Bsc4I	CCNNNNNNNGG	2 cut(s)	634, 878
Bse118I	RCCGGY	1 cut(s)	878
Bse1I	ACTGG	5 cut(s)	43, 311, 414, 485, 1012
Bse3DI	GCAATG	3 cut(s)	715, 791, 882
Bse8I	GATNNNNATC	1 cut(s)	167
BseBI	CCWGG	1 cut(s)	537
BseDI	CCNNGG	1 cut(s)	633
BseGI	GGATG	4 cut(s)	444, 643, 688, 1083
BseJI	GATNNNNATC	1 cut(s)	167
BseLI	CCNNNNNNNGG	2 cut(s)	634, 878
BseMI	GCAATG	3 cut(s)	715, 791, 882
BseMII	CTCAG	2 cut(s)	567, 621
BseNI	ACTGG	5 cut(s)	43, 311, 414, 485, 1012
BseRI	GAGGAG	1 cut(s)	843
BseSI	GKGCMC	1 cut(s)	38
BseXI	GCAGC	2 cut(s)	600, 874
Bsh1285I	CGRYCG	1 cut(s)	64
BshFI	GGCC	3 cut(s)	42, 484, 573
BsiEI	CGRYCG	1 cut(s)	64
BsiHKAI	GWGCWC	3 cut(s)	38, 1078, 1130
BsiHKCI	CYCGRG	1 cut(s)	23
BsiSI	CCGG	3 cut(s)	12, 879, 1165
BslFI	GGGAC	2 cut(s)	40, 822
BslI	CCNNNNNNNGG	2 cut(s)	634, 878
BsmAI	GTCTC	2 cut(s)	227, 526
BsmFI	GGGAC	2 cut(s)	40, 822
BsmI	GAATGC	1 cut(s)	454
BsnI	GGCC	3 cut(s)	42, 484, 573
Bso31I	GGTCTC	1 cut(s)	526
BsoBI	CYCGRG	1 cut(s)	23
Bsp1286I	GDGCHC	3 cut(s)	38, 1078, 1130
Bsp1407I	TGTACA	1 cut(s)	763
Bsp143I	GATC	6 cut(s)	118, 325, 352, 440, 649, 693
Bsp19I	CCATGG	1 cut(s)	633
BspACI	CCGC	4 cut(s)	55, 60, 303, 1168
BspANI	GGCC	3 cut(s)	42, 484, 573
BspCNI	CTCAG	2 cut(s)	568, 620
BspHI	TCATGA	1 cut(s)	817
BspLI	GGNNCC	1 cut(s)	309
BspPI	GGATC	3 cut(s)	360, 435, 701
BspTNI	GGTCTC	1 cut(s)	526
BsrDI	GCAATG	3 cut(s)	715, 791, 882
BsrFI	RCCGGY	1 cut(s)	878
BsrGI	TGTACA	1 cut(s)	763
BsrI	ACTGG	5 cut(s)	43, 311, 414, 485, 1012
BssAI	RCCGGY	1 cut(s)	878
BssECI	CCNNGG	1 cut(s)	633
BssMI	GATC	6 cut(s)	118, 325, 352, 440, 649, 693
BssT1I	CCWWGG	1 cut(s)	633
Bst2UI	CCWGG	1 cut(s)	537
Bst4CI	ACNGT	6 cut(s)	211, 500, 962, 1073, 1146, 1179
Bst6I	CTCTTC	1 cut(s)	123
BstAUI	TGTACA	1 cut(s)	763
BstC8I	GCNNGC	2 cut(s)	618, 880
BstDEI	CTNAG	4 cut(s)	576, 607, 800, 840
BstDSI	CCRYGG	1 cut(s)	633
BstEII	GGTNACC	1 cut(s)	903
BstF5I	GGATG	4 cut(s)	444, 643, 688, 1083
BstKTI	GATC	6 cut(s)	121, 328, 355, 443, 652, 696
BstMAI	GTCTC	2 cut(s)	227, 526
BstMBI	GATC	6 cut(s)	118, 325, 352, 440, 649, 693
BstMCI	CGRYCG	1 cut(s)	64
BstMWI	GCNNNNNNNGC	4 cut(s)	403, 592, 875, 884
BstNI	CCWGG	1 cut(s)	537
BstPI	GGTNACC	1 cut(s)	903
BstSCI	CCNGG	2 cut(s)	11, 535
BstSFI	CTRYAG	1 cut(s)	207
BstSLI	GKGCMC	1 cut(s)	38
BstV1I	GCAGC	2 cut(s)	600, 874
BstV2I	GAAGAC	1 cut(s)	595
BstX2I	RGATCY	3 cut(s)	352, 440, 649
BstYI	RGATCY	3 cut(s)	352, 440, 649
BsuRI	GGCC	3 cut(s)	42, 484, 573
BtgI	CCRYGG	1 cut(s)	633
BtsCI	GGATG	4 cut(s)	444, 643, 688, 1083
BtsI	GCAGTG	2 cut(s)	449, 1006
BtsIMutI	CAGTG	6 cut(s)	36, 449, 478, 1005, 1006, 1078
Cac8I	GCNNGC	2 cut(s)	618, 880
CciI	TCATGA	1 cut(s)	817
Cfr10I	RCCGGY	1 cut(s)	878
Cfr13I	GGNCC	3 cut(s)	41, 572, 659
Csp6I	GTAC	3 cut(s)	266, 427, 764
CviAII	CATG	4 cut(s)	375, 394, 634, 818
CviQI	GTAC	3 cut(s)	266, 427, 764
DdeI	CTNAG	4 cut(s)	576, 607, 800, 840
DpnI	GATC	6 cut(s)	120, 327, 354, 442, 651, 695
DpnII	GATC	6 cut(s)	118, 325, 352, 440, 649, 693
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Eco130I	CCWWGG	1 cut(s)	633
Eco31I	GGTCTC	1 cut(s)	526
Eco32I	GATATC	1 cut(s)	169
Eco47I	GGWCC	1 cut(s)	659
Eco57I	CTGAAG	3 cut(s)	219, 575, 765
Eco88I	CYCGRG	1 cut(s)	23
Eco91I	GGTNACC	1 cut(s)	903
EcoO65I	GGTNACC	1 cut(s)	903
EcoRII	CCWGG	1 cut(s)	535
EcoRV	GATATC	1 cut(s)	169
EcoT14I	CCWWGG	1 cut(s)	633
ErhI	CCWWGG	1 cut(s)	633
FaeI	CATG	4 cut(s)	378, 397, 637, 821
FalI	AAGNNNNNCTT	4 cut(s)	573, 605, 1115, 1147
FaqI	GGGAC	2 cut(s)	40, 822
FatI	CATG	4 cut(s)	374, 393, 633, 817
FauI	CCCGC	1 cut(s)	296
FbaI	TGATCA	1 cut(s)	118
Fnu4HI	GCNGC	2 cut(s)	614, 888
FokI	GGATG	4 cut(s)	431, 650, 695, 1070
Fsp4HI	GCNGC	2 cut(s)	614, 888
GluI	GCNGC	2 cut(s)	614, 888
GsuI	CTGGAG	1 cut(s)	550
HaeIII	GGCC	3 cut(s)	42, 484, 573
HapII	CCGG	3 cut(s)	12, 879, 1165
Hin1II	CATG	4 cut(s)	378, 397, 637, 821
HindIII	AAGCTT	1 cut(s)	969
HinfI	GANTC	5 cut(s)	21, 28, 540, 845, 1030
HpaII	CCGG	3 cut(s)	12, 879, 1165
HphI	GGTGA	2 cut(s)	450, 698
Hpy166II	GTNNAC	2 cut(s)	36, 1154
Hpy188I	TCNGA	5 cut(s)	102, 199, 610, 955, 1029
Hpy188III	TCNNGA	5 cut(s)	25, 172, 250, 522, 818
Hpy8I	GTNNAC	2 cut(s)	36, 1154
HpyAV	CCTTC	3 cut(s)	415, 672, 731
HpyCH4III	ACNGT	6 cut(s)	211, 500, 962, 1073, 1146, 1179
HpyCH4IV	ACGT	1 cut(s)	823
HpyF10VI	GCNNNNNNNGC	4 cut(s)	403, 592, 875, 884
HpyF3I	CTNAG	4 cut(s)	576, 607, 800, 840
HpySE526I	ACGT	1 cut(s)	823
Hsp92II	CATG	4 cut(s)	378, 397, 637, 821
KroI	GCCGGC	1 cut(s)	878
KroNI	GCCGGC	1 cut(s)	880
Ksp22I	TGATCA	1 cut(s)	118
Kzo9I	GATC	6 cut(s)	118, 325, 352, 440, 649, 693
LmnI	GCTCC	3 cut(s)	157, 874, 1133
Lsp1109I	GCAGC	2 cut(s)	600, 874
MaeII	ACGT	1 cut(s)	823
MaeIII	GTNAC	4 cut(s)	787, 824, 903, 1003
MalI	GATC	6 cut(s)	120, 327, 354, 442, 651, 695
MboI	GATC	6 cut(s)	118, 325, 352, 440, 649, 693
MboII	GAAGA	7 cut(s)	140, 158, 212, 467, 581, 595, 977
MfeI	CAATTG	1 cut(s)	750
MflI	RGATCY	3 cut(s)	352, 440, 649
MhlI	GDGCHC	3 cut(s)	38, 1078, 1130
MluCI	AATT	8 cut(s)	492, 551, 666, 706, 750, 864, 1034, 1099
MlyI	GAGTC	2 cut(s)	15, 22
MmeI	TCCRAC	1 cut(s)	398
MroNI	GCCGGC	1 cut(s)	878
MroXI	GAANNNNTTC	1 cut(s)	1103
MseI	TTAA	3 cut(s)	338, 410, 1037
MslI	CAYNNNNRTG	5 cut(s)	55, 114, 638, 681, 771
MspA1I	CMGCKG	1 cut(s)	785
MspI	CCGG	3 cut(s)	12, 879, 1165
MspR9I	CCNGG	2 cut(s)	13, 537
MunI	CAATTG	1 cut(s)	750
Mva1269I	GAATGC	1 cut(s)	454
MvaI	CCWGG	1 cut(s)	537
MwoI	GCNNNNNNNGC	4 cut(s)	403, 592, 875, 884
NaeI	GCCGGC	1 cut(s)	880
NciI	CCSGG	1 cut(s)	13
NcoI	CCATGG	1 cut(s)	633
NdeII	GATC	6 cut(s)	118, 325, 352, 440, 649, 693
NgoMIV	GCCGGC	1 cut(s)	878
NlaIII	CATG	4 cut(s)	378, 397, 637, 821
NlaIV	GGNNCC	1 cut(s)	309
NmuCI	GTSAC	1 cut(s)	1003
OliI	CACNNNNGTG	1 cut(s)	55
PagI	TCATGA	1 cut(s)	817
PctI	GAATGC	1 cut(s)	454
PdiI	GCCGGC	1 cut(s)	880
PdmI	GAANNNNTTC	1 cut(s)	1103
PfeI	GAWTC	3 cut(s)	540, 845, 1030
PkrI	GCNGC	2 cut(s)	615, 889
PleI	GAGTC	2 cut(s)	15, 22
PpsI	GAGTC	2 cut(s)	15, 22
Psp1406I	AACGTT	1 cut(s)	823
Psp6I	CCWGG	1 cut(s)	535
PspEI	GGTNACC	1 cut(s)	903
PspGI	CCWGG	1 cut(s)	535
PspN4I	GGNNCC	1 cut(s)	309
PspPI	GGNCC	3 cut(s)	41, 572, 659
PsuI	RGATCY	3 cut(s)	352, 440, 649
PvuII	CAGCTG	1 cut(s)	785
RsaI	GTAC	3 cut(s)	267, 428, 765
RsaNI	GTAC	3 cut(s)	266, 427, 764
RseI	CAYNNNNRTG	5 cut(s)	55, 114, 638, 681, 771
SaqAI	TTAA	3 cut(s)	338, 410, 1037
SatI	GCNGC	2 cut(s)	614, 888
Sau3AI	GATC	6 cut(s)	118, 325, 352, 440, 649, 693
Sau96I	GGNCC	3 cut(s)	41, 572, 659
ScaI	AGTACT	1 cut(s)	428
SchI	GAGTC	2 cut(s)	15, 22
ScrFI	CCNGG	2 cut(s)	13, 537
SduI	GDGCHC	3 cut(s)	38, 1078, 1130
SfcI	CTRYAG	1 cut(s)	207
SinI	GGWCC	1 cut(s)	659
SmiMI	CAYNNNNRTG	5 cut(s)	55, 114, 638, 681, 771
SmlI	CTYRAG	2 cut(s)	250, 507
SmoI	CTYRAG	2 cut(s)	250, 507
Sse9I	AATT	8 cut(s)	492, 551, 666, 706, 750, 864, 1034, 1099
SsiI	CCGC	4 cut(s)	55, 60, 303, 1168
StyD4I	CCNGG	2 cut(s)	11, 535
StyI	CCWWGG	1 cut(s)	633
TaaI	ACNGT	6 cut(s)	211, 500, 962, 1073, 1146, 1179
TaiI	ACGT	1 cut(s)	826
TaqI	TCGA	2 cut(s)	696, 1097
TasI	AATT	8 cut(s)	492, 551, 666, 706, 750, 864, 1034, 1099
TatI	WGTACW	2 cut(s)	426, 763
TfiI	GAWTC	3 cut(s)	540, 845, 1030
Tru1I	TTAA	3 cut(s)	338, 410, 1037
Tru9I	TTAA	3 cut(s)	338, 410, 1037
TscAI	CASTG	6 cut(s)	43, 456, 485, 1006, 1012, 1078
TseFI	GTSAC	1 cut(s)	1003
TseI	GCWGC	2 cut(s)	613, 887
Tsp45I	GTSAC	1 cut(s)	1003
TspDTI	ATGAA	8 cut(s)	234, 306, 382, 396, 789, 834, 837, 947
TspRI	CASTG	6 cut(s)	43, 456, 485, 1006, 1012, 1078
VneI	GTGCAC	1 cut(s)	34
VpaK11BI	GGWCC	1 cut(s)	659
XmnI	GAANNNNTTC	1 cut(s)	1103
ZrmI	AGTACT	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.