Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0008086

Physical Location & Seq

Genomic Coordinates Forward (+)

5935738 .. 5938604

Gene Structure 2867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1084700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGAGTGTGCCGGGAAGGGACTGGGTACTCGGTGCACGGGCCCACCCACCAGACGATGTGCTCGCTGTGGAGCCGTCGCTTACTGCGCCGTAGCTCACCAGATTGCGCATTGGCCTGAGCACAAAGAAGAGTGCGGAAGGTTAGAACAACATATGAAGCATATGGACACCTTGAATGAGTTTCCATTCACTTTTACTCAAGAAGCTACGGTTCAGGTGTGTGAAAAGCAGGAGACGAGGTGTTCAGTCTTGGAAAAAAGAGGGGTCCATCAAATGGGAATGTGGTTGTATGAATGTTGTTGCGGGGATTCAGTTATTTCGTTTGATTGTTTAAGGTTGAATAGTTCTTGGGATCTCTCGAATACCTTTTGCCCTTGTACTGAACCTTCAGTTATGATATCAGAGTGTTTAACCAGTTGGAAGGAGTACTATGAGTGGAGGTCCATCCCGCTGCATTCACCTGTTGCATTGCTTCTCCATTGGCCTCTTACAATTTACTACGCCACTCAAGTAGCTGGTTTGGGAAGCTGGACTTCTGGAATCAGCGAGAAATTGTACATACATTATCTTGGCCCTGAGAAAGAGCTTCTTCAGCTTTCTCTCTTCTCAGAGTTGCATGCGCTTTTCCCTAACAGGAACGTGCATTTAGAGCTTATTGGGCCTTTGATTCCACAGCATAGAGATGGCGAGATGATCACATTGTCTGATTATGCACATTGCATTGATAGAGATTGCATTTGTAAATCCTCAAGTAAGACTGTCAGCGGGGATGTACATACTAGTGAACCTTCAGCAGTAACATTGCAACTTAGAAGCGGCTTTTATCATGACCGTTACATGGATATAACTAAGGATTCATCACCTCACTTAGTCATTGCTCCAAATGCAGGAATTGCGGCCTATTCAAGCTGGTTACCGACTATTGAGCTAATAAAGGATATGAACATCCCAGCAGTTTTTTCCGATTACTGCAAAGAAGCTTGTCATCTTGGAGCTCGTTGCATAAGCAGCATAACTGGCCGTCCTCTCAATATCCCTATTCAGTTAAATCCGTTTAGGCAGCCGATGGTGGTGGAAGACAGTGTTCTTGTTCTTCCTTGCTACTCGAATTGCTTCCTCTACGGGATGTCAAATTGGGGGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-MYND

Protein Analysis

382

Amino Acids

42.91

Weight (kDa)

5.92

Isoelectric Point (pI)

53.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-MYND	PF01753	11 - 45	6.5e-09	MYND finger
MSS51_C	PF20179	162 - 357	2.5e-32	MSS51 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70150
fragaria_vesca	FvH4_4g35220 FvH4_4g35220 FvH4_4g35220 FvH4_4g35220 FvH4_4g35220 FvH4_4g35220
malus_domestica	MD16G1084700.v1.1
prunus_persica	Prupe.1G261400_v2.0.a1 Prupe.1G261400_v2.0.a1 Prupe.1G261400_v2.0.a1
pyrus_communis	pycom13g07380
rosa_chinensis	RchiOBHm_Chr4g0444821
rosa_laevigata	RLG00000005799
rosa_multiflora	Rmu_sc0007130.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385310
rosa_rugosa	Rorug04G0355300
rosa_samantha	Rh4AG416700 Rh4BG428500 Rh4BG428600 Rh4CG443200 Rh4DG424200 Rh4DG424300
rosa_wichuraiana	Rw4G035720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	108
AccB7I	CCANNNNNTGG	1 cut(s)	274
AciI	CCGC	6 cut(s)	135, 303, 449, 765, 816, 896
AclWI	GGATC	1 cut(s)	360
AcoI	YGGCCR	1 cut(s)	1018
AcuI	CTGAAG	3 cut(s)	372, 575, 774
AfaI	GTAC	5 cut(s)	28, 379, 428, 557, 774
AfiI	CCNNNNNNNGG	3 cut(s)	274, 838, 887
AgsI	TTSAA	3 cut(s)	175, 340, 906
AhlI	ACTAGT	1 cut(s)	779
Alw21I	GWGCWC	4 cut(s)	38, 64, 123, 997
Alw26I	GTCTC	1 cut(s)	227
Alw44I	GTGCAC	1 cut(s)	34
AlwI	GGATC	1 cut(s)	360
AoxI	GGCC	7 cut(s)	40, 113, 482, 571, 659, 897, 1018
ApaI	GGGCCC	1 cut(s)	44
ApaLI	GTGCAC	1 cut(s)	34
ApeKI	GCWGC	3 cut(s)	451, 1008, 1060
Asp700I	GAANNNNTTC	1 cut(s)	1112
AspLEI	GCGC	3 cut(s)	89, 109, 622
AspS9I	GGNCC	6 cut(s)	40, 41, 265, 441, 572, 659
AsuC2I	CCSGG	1 cut(s)	13
AsuHPI	GGTGA	3 cut(s)	89, 450, 852
AvaII	GGWCC	2 cut(s)	265, 441
BaeGI	GKGCMC	2 cut(s)	38, 44
BanII	GRGCYC	2 cut(s)	44, 997
BarI	GAAGNNNNNNTAC	2 cut(s)	370, 402
BbsI	GAAGAC	1 cut(s)	1083
Bbv12I	GWGCWC	4 cut(s)	38, 64, 123, 997
BbvI	GCAGC	3 cut(s)	438, 1020, 1072
BccI	CCATC	4 cut(s)	276, 452, 677, 1060
BceAI	ACGGC	3 cut(s)	59, 74, 1005
BclI	TGATCA	1 cut(s)	693
BcnI	CCSGG	1 cut(s)	13
BcoDI	GTCTC	1 cut(s)	227
BcuI	ACTAGT	1 cut(s)	779
BfaI	CTAG	1 cut(s)	780
BisI	GCNGC	5 cut(s)	452, 817, 897, 1009, 1061
BlsI	GCNGC	5 cut(s)	453, 818, 898, 1010, 1062
BmcAI	AGTACT	1 cut(s)	428
Bme1390I	CCNGG	1 cut(s)	13
Bme18I	GGWCC	2 cut(s)	265, 441
BmgT120I	GGNCC	6 cut(s)	40, 41, 265, 441, 572, 659
BmiI	GGNNCC	3 cut(s)	42, 73, 266
BmrFI	CCNGG	1 cut(s)	13
BmrI	ACTGGG	1 cut(s)	32
BmuI	ACTGGG	1 cut(s)	32
BpiI	GAAGAC	1 cut(s)	1083
Bpu10I	CCTNAGC	1 cut(s)	117
BpuEI	CTTGAG	3 cut(s)	183, 492, 733
BpuMI	CCSGG	1 cut(s)	13
BsaXI	ACNNNNNCTCC	2 cut(s)	224, 254
Bsc4I	CCNNNNNNNGG	3 cut(s)	274, 838, 887
Bse1I	ACTGG	3 cut(s)	27, 414, 1021
Bse3DI	GCAATG	4 cut(s)	467, 715, 800, 873
BseGI	GGATG	4 cut(s)	444, 775, 945, 1131
BseLI	CCNNNNNNNGG	3 cut(s)	274, 838, 887
BseMI	GCAATG	4 cut(s)	467, 715, 800, 873
BseMII	CTCAG	3 cut(s)	108, 567, 621
BseNI	ACTGG	3 cut(s)	27, 414, 1021
BseSI	GKGCMC	2 cut(s)	38, 44
BseXI	GCAGC	3 cut(s)	438, 1020, 1072
BseYI	CCCAGC	1 cut(s)	949
BshFI	GGCC	7 cut(s)	42, 115, 484, 573, 661, 899, 1020
BsiHKAI	GWGCWC	4 cut(s)	38, 64, 123, 997
BsiSI	CCGG	1 cut(s)	12
BslFI	GGGAC	1 cut(s)	33
BslI	CCNNNNNNNGG	3 cut(s)	274, 838, 887
BsmAI	GTCTC	1 cut(s)	227
BsmBI	CGTCTC	1 cut(s)	227
BsmFI	GGGAC	1 cut(s)	33
BsmI	GAATGC	1 cut(s)	454
BsnI	GGCC	7 cut(s)	42, 115, 484, 573, 661, 899, 1020
Bsp120I	GGGCCC	1 cut(s)	40
Bsp1286I	GDGCHC	5 cut(s)	38, 44, 64, 123, 997
Bsp1407I	TGTACA	2 cut(s)	555, 772
Bsp143I	GATC	2 cut(s)	352, 693
BspACI	CCGC	6 cut(s)	135, 303, 449, 765, 816, 896
BspANI	GGCC	7 cut(s)	42, 115, 484, 573, 661, 899, 1020
BspCNI	CTCAG	3 cut(s)	109, 568, 620
BspHI	TCATGA	1 cut(s)	826
BspLI	GGNNCC	3 cut(s)	42, 73, 266
BspPI	GGATC	1 cut(s)	360
BsrDI	GCAATG	4 cut(s)	467, 715, 800, 873
BsrGI	TGTACA	2 cut(s)	555, 772
BsrI	ACTGG	3 cut(s)	27, 414, 1021
BssMI	GATC	2 cut(s)	352, 693
Bst4CI	ACNGT	4 cut(s)	211, 760, 833, 1082
Bst6I	CTCTTC	2 cut(s)	123, 608
BstAPI	GCANNNNNTGC	1 cut(s)	893
BstAUI	TGTACA	2 cut(s)	555, 772
BstC8I	GCNNGC	2 cut(s)	64, 618
BstDEI	CTNAG	6 cut(s)	117, 576, 607, 809, 849, 868
BstEII	GGTNACC	1 cut(s)	912
BstF5I	GGATG	4 cut(s)	444, 775, 945, 1131
BstHHI	GCGC	3 cut(s)	89, 109, 622
BstKTI	GATC	2 cut(s)	355, 696
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	2 cut(s)	352, 693
BstMWI	GCNNNNNNNGC	8 cut(s)	86, 592, 649, 658, 884, 893, 1008, 1017
BstNSI	RCATGY	1 cut(s)	620
BstPI	GGTNACC	1 cut(s)	912
BstSCI	CCNGG	1 cut(s)	11
BstSLI	GKGCMC	2 cut(s)	38, 44
BstV1I	GCAGC	3 cut(s)	438, 1020, 1072
BstV2I	GAAGAC	1 cut(s)	1083
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BsuRI	GGCC	7 cut(s)	42, 115, 484, 573, 661, 899, 1020
BtsCI	GGATG	4 cut(s)	444, 775, 945, 1131
BtsIMutI	CAGTG	1 cut(s)	1087
Cac8I	GCNNGC	2 cut(s)	64, 618
CciI	TCATGA	1 cut(s)	826
CfoI	GCGC	3 cut(s)	89, 109, 622
Cfr13I	GGNCC	6 cut(s)	40, 41, 265, 441, 572, 659
Csp6I	GTAC	5 cut(s)	27, 378, 427, 556, 773
CviAII	CATG	3 cut(s)	617, 827, 838
CviQI	GTAC	5 cut(s)	27, 378, 427, 556, 773
DdeI	CTNAG	6 cut(s)	117, 576, 607, 809, 849, 868
DpnI	GATC	2 cut(s)	354, 695
DpnII	GATC	2 cut(s)	352, 693
EaeI	YGGCCR	1 cut(s)	1018
Eam1104I	CTCTTC	2 cut(s)	123, 608
EarI	CTCTTC	2 cut(s)	123, 608
Ecl136II	GAGCTC	1 cut(s)	995
Eco24I	GRGCYC	2 cut(s)	44, 997
Eco32I	GATATC	1 cut(s)	399
Eco47I	GGWCC	2 cut(s)	265, 441
Eco53kI	GAGCTC	1 cut(s)	995
Eco57I	CTGAAG	3 cut(s)	372, 575, 774
Eco91I	GGTNACC	1 cut(s)	912
EcoICRI	GAGCTC	1 cut(s)	995
EcoO65I	GGTNACC	1 cut(s)	912
EcoRV	GATATC	1 cut(s)	399
EcoT38I	GRGCYC	2 cut(s)	44, 997
Esp3I	CGTCTC	1 cut(s)	227
FaeI	CATG	3 cut(s)	620, 830, 841
FalI	AAGNNNNNCTT	4 cut(s)	517, 549, 573, 605
FaqI	GGGAC	1 cut(s)	33
FatI	CATG	3 cut(s)	616, 826, 837
FauI	CCCGC	3 cut(s)	296, 456, 758
FauNDI	CATATG	2 cut(s)	153, 162
FbaI	TGATCA	1 cut(s)	693
Fnu4HI	GCNGC	5 cut(s)	452, 817, 897, 1009, 1061
FokI	GGATG	4 cut(s)	431, 782, 932, 1138
FriOI	GRGCYC	2 cut(s)	44, 997
Fsp4HI	GCNGC	5 cut(s)	452, 817, 897, 1009, 1061
FspBI	CTAG	1 cut(s)	780
FspI	TGCGCA	1 cut(s)	108
GlaI	GCGC	3 cut(s)	88, 108, 621
GluI	GCNGC	5 cut(s)	452, 817, 897, 1009, 1061
GsaI	CCCAGC	1 cut(s)	953
HaeIII	GGCC	7 cut(s)	42, 115, 484, 573, 661, 899, 1020
HapII	CCGG	1 cut(s)	12
HhaI	GCGC	3 cut(s)	89, 109, 622
Hin1II	CATG	3 cut(s)	620, 830, 841
Hin6I	GCGC	3 cut(s)	87, 107, 620
HinP1I	GCGC	3 cut(s)	87, 107, 620
HindIII	AAGCTT	1 cut(s)	978
HinfI	GANTC	4 cut(s)	308, 540, 667, 854
HpaII	CCGG	1 cut(s)	12
HphI	GGTGA	3 cut(s)	89, 450, 852
Hpy166II	GTNNAC	2 cut(s)	36, 785
Hpy188I	TCNGA	4 cut(s)	403, 610, 706, 964
Hpy188III	TCNNGA	4 cut(s)	200, 358, 537, 827
Hpy8I	GTNNAC	2 cut(s)	36, 785
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	5 cut(s)	10, 132, 396, 415, 798
HpyCH4III	ACNGT	4 cut(s)	211, 760, 833, 1082
HpyCH4IV	ACGT	1 cut(s)	639
HpyF10VI	GCNNNNNNNGC	8 cut(s)	86, 592, 649, 658, 884, 893, 1008, 1017
HpyF3I	CTNAG	6 cut(s)	117, 576, 607, 809, 849, 868
HpySE526I	ACGT	1 cut(s)	639
Hsp92II	CATG	3 cut(s)	620, 830, 841
HspAI	GCGC	3 cut(s)	87, 107, 620
Ksp22I	TGATCA	1 cut(s)	693
Kzo9I	GATC	2 cut(s)	352, 693
LmnI	GCTCC	3 cut(s)	71, 883, 992
Lsp1109I	GCAGC	3 cut(s)	438, 1020, 1072
MaeI	CTAG	1 cut(s)	780
MaeII	ACGT	1 cut(s)	639
MaeIII	GTNAC	3 cut(s)	796, 833, 912
MalI	GATC	2 cut(s)	354, 695
MboI	GATC	2 cut(s)	352, 693
MboII	GAAGA	5 cut(s)	140, 581, 595, 1085, 1088
MflI	RGATCY	1 cut(s)	352
MhlI	GDGCHC	5 cut(s)	38, 44, 64, 123, 997
MluCI	AATT	5 cut(s)	492, 551, 891, 1108, 1132
MmeI	TCCRAC	1 cut(s)	398
MnlI	CCTC	8 cut(s)	231, 254, 432, 495, 757, 873, 1035, 1127
MroXI	GAANNNNTTC	1 cut(s)	1112
MseI	TTAA	3 cut(s)	332, 410, 1046
MslI	CAYNNNNRTG	2 cut(s)	681, 780
MspA1I	CMGCKG	2 cut(s)	451, 765
MspI	CCGG	1 cut(s)	12
MspR9I	CCNGG	1 cut(s)	13
Mva1269I	GAATGC	1 cut(s)	454
MwoI	GCNNNNNNNGC	8 cut(s)	86, 592, 649, 658, 884, 893, 1008, 1017
NciI	CCSGG	1 cut(s)	13
NdeI	CATATG	2 cut(s)	153, 162
NdeII	GATC	2 cut(s)	352, 693
NlaIII	CATG	3 cut(s)	620, 830, 841
NlaIV	GGNNCC	3 cut(s)	42, 73, 266
NsbI	TGCGCA	1 cut(s)	108
NspI	RCATGY	1 cut(s)	620
PaeI	GCATGC	1 cut(s)	620
PagI	TCATGA	1 cut(s)	826
PctI	GAATGC	1 cut(s)	454
PdmI	GAANNNNTTC	1 cut(s)	1112
PfeI	GAWTC	4 cut(s)	308, 540, 667, 854
PflMI	CCANNNNNTGG	1 cut(s)	274
PkrI	GCNGC	5 cut(s)	453, 818, 898, 1010, 1062
Psp124BI	GAGCTC	1 cut(s)	997
PspEI	GGTNACC	1 cut(s)	912
PspFI	CCCAGC	1 cut(s)	949
PspN4I	GGNNCC	3 cut(s)	42, 73, 266
PspOMI	GGGCCC	1 cut(s)	40
PspPI	GGNCC	6 cut(s)	40, 41, 265, 441, 572, 659
PsuI	RGATCY	1 cut(s)	352
RsaI	GTAC	5 cut(s)	28, 379, 428, 557, 774
RsaNI	GTAC	5 cut(s)	27, 378, 427, 556, 773
RseI	CAYNNNNRTG	2 cut(s)	681, 780
SacI	GAGCTC	1 cut(s)	997
SaqAI	TTAA	3 cut(s)	332, 410, 1046
SatI	GCNGC	5 cut(s)	452, 817, 897, 1009, 1061
Sau3AI	GATC	2 cut(s)	352, 693
Sau96I	GGNCC	6 cut(s)	40, 41, 265, 441, 572, 659
ScaI	AGTACT	1 cut(s)	428
ScrFI	CCNGG	1 cut(s)	13
SduI	GDGCHC	5 cut(s)	38, 44, 64, 123, 997
SinI	GGWCC	2 cut(s)	265, 441
SmiMI	CAYNNNNRTG	2 cut(s)	681, 780
SmlI	CTYRAG	3 cut(s)	198, 507, 748
SmoI	CTYRAG	3 cut(s)	198, 507, 748
SpeI	ACTAGT	1 cut(s)	779
SphI	GCATGC	1 cut(s)	620
Sse9I	AATT	5 cut(s)	492, 551, 891, 1108, 1132
SsiI	CCGC	6 cut(s)	135, 303, 449, 765, 816, 896
SspMI	CTAG	1 cut(s)	780
SstI	GAGCTC	1 cut(s)	997
StyD4I	CCNGG	1 cut(s)	11
TaaI	ACNGT	4 cut(s)	211, 760, 833, 1082
TaiI	ACGT	1 cut(s)	642
TaqI	TCGA	2 cut(s)	359, 1106
TasI	AATT	5 cut(s)	492, 551, 891, 1108, 1132
TatI	WGTACW	4 cut(s)	377, 426, 555, 772
TauI	GCSGC	2 cut(s)	819, 899
TfiI	GAWTC	4 cut(s)	308, 540, 667, 854
Tru1I	TTAA	3 cut(s)	332, 410, 1046
Tru9I	TTAA	3 cut(s)	332, 410, 1046
TscAI	CASTG	1 cut(s)	1087
TseI	GCWGC	3 cut(s)	451, 1008, 1060
TspDTI	ATGAA	4 cut(s)	170, 306, 846, 956
TspGWI	ACGGA	1 cut(s)	1041
TspRI	CASTG	1 cut(s)	1087
Van91I	CCANNNNNTGG	1 cut(s)	274
VneI	GTGCAC	1 cut(s)	34
VpaK11BI	GGWCC	2 cut(s)	265, 441
XceI	RCATGY	1 cut(s)	620
XmnI	GAANNNNTTC	1 cut(s)	1112
XspI	CTAG	1 cut(s)	780
ZrmI	AGTACT	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.