Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0008086

Physical Location & Seq

Genomic Coordinates Reverse (-)

63083988 .. 63085113

Gene Structure 1126 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG424300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGAGGTGTGCCGGGAAAGGACTCGGGACTCGGTGCACTGGCCCACCAACACGGCGGTGCGGTCGTTGTGAAGCCGTTGCTTATTGCTCTTTATCTCATCAGATTTTGCATTGGCGTGATCATAAAGAAGAGTGTGAAAGGTTAGAAGAACAGATGGAGCAGATAGATATCTTGAACGAGTTTCCTTTCACTTTTTCTGAAGAAGCTACAGTTCAGGTTTGTGAAAAGCAGGAGACAAGGTGTTCATTCTTGAGAAAAAGAGGGGTCCATCAAACGGGAATGTGGTTGTATGAATGTTGTTGCGGGGAACCAGTTATGTCCTTTGATCATTCAAGGTTAAATAACACTTGGGATCTCTCAAACACCCTCTGCCCATGTAATGGTATCATCTTTTGCTTCTGGCTCTTTGTGATGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007276 GO:0007281 GO:0007283 GO:0007286 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0019899 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0042826 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044703 GO:0045892 GO:0045934 GO:0048232 GO:0048468 GO:0048515 GO:0048519 GO:0048523 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-MYND

Protein Analysis

139

Amino Acids

16.21

Weight (kDa)

5.73

Isoelectric Point (pI)

51.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-MYND	PF01753	11 - 45	2.7e-09	MYND finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0008086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70150
fragaria_vesca	FvH4_4g35220 FvH4_4g35220 FvH4_4g35220 FvH4_4g35220 FvH4_4g35220 FvH4_4g35220
malus_domestica	MD16G1084700.v1.1
prunus_persica	Prupe.1G261400_v2.0.a1 Prupe.1G261400_v2.0.a1 Prupe.1G261400_v2.0.a1
pyrus_communis	pycom13g07380
rosa_chinensis	RchiOBHm_Chr4g0444821
rosa_laevigata	RLG00000005799
rosa_multiflora	Rmu_sc0007130.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385310
rosa_rugosa	Rorug04G0355300
rosa_samantha	Rh4AG416700 Rh4BG428500 Rh4BG428600 Rh4CG443200 Rh4DG424200 Rh4DG424300
rosa_wichuraiana	Rw4G035720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	380
AciI	CCGC	3 cut(s)	55, 60, 303
AclWI	GGATC	1 cut(s)	360
AcuI	CTGAAG	1 cut(s)	219
AfiI	CCNNNNNNNGG	2 cut(s)	274, 380
AgsI	TTSAA	2 cut(s)	175, 333
AleI	CACNNNNGTG	1 cut(s)	55
AluBI	AGCT	1 cut(s)	206
AluI	AGCT	1 cut(s)	206
Alw21I	GWGCWC	1 cut(s)	38
Alw26I	GTCTC	1 cut(s)	227
Alw44I	GTGCAC	1 cut(s)	34
AlwI	GGATC	1 cut(s)	360
Ama87I	CYCGRG	1 cut(s)	23
AoxI	GGCC	1 cut(s)	40
ApaLI	GTGCAC	1 cut(s)	34
AspS9I	GGNCC	2 cut(s)	41, 265
AsuC2I	CCSGG	1 cut(s)	13
AvaI	CYCGRG	1 cut(s)	23
AvaII	GGWCC	1 cut(s)	265
BaeGI	GKGCMC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	38
BccI	CCATC	3 cut(s)	148, 276, 406
BceAI	ACGGC	2 cut(s)	59, 68
BclI	TGATCA	2 cut(s)	118, 325
BcnI	CCSGG	1 cut(s)	13
BcoDI	GTCTC	1 cut(s)	227
BfmI	CTRYAG	1 cut(s)	207
Bme1390I	CCNGG	1 cut(s)	13
Bme18I	GGWCC	1 cut(s)	265
BmeT110I	CYCGRG	1 cut(s)	23
BmgT120I	GGNCC	2 cut(s)	41, 265
BmiI	GGNNCC	2 cut(s)	266, 309
BmrFI	CCNGG	1 cut(s)	13
BpuEI	CTTGAG	1 cut(s)	271
BpuMI	CCSGG	1 cut(s)	13
BsaBI	GATNNNNATC	1 cut(s)	167
BsaXI	ACNNNNNCTCC	2 cut(s)	224, 254
Bsc4I	CCNNNNNNNGG	2 cut(s)	274, 380
Bse1I	ACTGG	2 cut(s)	43, 311
Bse8I	GATNNNNATC	1 cut(s)	167
BseJI	GATNNNNATC	1 cut(s)	167
BseLI	CCNNNNNNNGG	2 cut(s)	274, 380
BseNI	ACTGG	2 cut(s)	43, 311
BseSI	GKGCMC	1 cut(s)	38
Bsh1285I	CGRYCG	1 cut(s)	64
BshFI	GGCC	1 cut(s)	42
BsiEI	CGRYCG	1 cut(s)	64
BsiHKAI	GWGCWC	1 cut(s)	38
BsiHKCI	CYCGRG	1 cut(s)	23
BsiSI	CCGG	1 cut(s)	12
BslFI	GGGAC	1 cut(s)	40
BslI	CCNNNNNNNGG	2 cut(s)	274, 380
BsmAI	GTCTC	1 cut(s)	227
BsmFI	GGGAC	1 cut(s)	40
BsnI	GGCC	1 cut(s)	42
BsoBI	CYCGRG	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	3 cut(s)	118, 325, 352
BspACI	CCGC	3 cut(s)	55, 60, 303
BspANI	GGCC	1 cut(s)	42
BspLI	GGNNCC	2 cut(s)	266, 309
BspPI	GGATC	1 cut(s)	360
BsrI	ACTGG	2 cut(s)	43, 311
BssMI	GATC	3 cut(s)	118, 325, 352
Bst4CI	ACNGT	1 cut(s)	211
Bst6I	CTCTTC	1 cut(s)	123
BstKTI	GATC	3 cut(s)	121, 328, 355
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	3 cut(s)	118, 325, 352
BstMCI	CGRYCG	1 cut(s)	64
BstSCI	CCNGG	1 cut(s)	11
BstSFI	CTRYAG	1 cut(s)	207
BstSLI	GKGCMC	1 cut(s)	38
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BsuRI	GGCC	1 cut(s)	42
BtsIMutI	CAGTG	1 cut(s)	36
Cfr13I	GGNCC	2 cut(s)	41, 265
CviAII	CATG	1 cut(s)	375
CviJI	RGCY	4 cut(s)	42, 74, 206, 403
CviKI_1	RGCY	4 cut(s)	42, 74, 206, 403
DpnI	GATC	3 cut(s)	120, 327, 354
DpnII	GATC	3 cut(s)	118, 325, 352
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Eco32I	GATATC	1 cut(s)	169
Eco47I	GGWCC	1 cut(s)	265
Eco57I	CTGAAG	1 cut(s)	219
Eco88I	CYCGRG	1 cut(s)	23
EcoRV	GATATC	1 cut(s)	169
FaeI	CATG	1 cut(s)	378
FaiI	YATR	4 cut(s)	123, 291, 317, 376
FaqI	GGGAC	1 cut(s)	40
FatI	CATG	1 cut(s)	374
FauI	CCCGC	1 cut(s)	296
FbaI	TGATCA	2 cut(s)	118, 325
HaeIII	GGCC	1 cut(s)	42
HapII	CCGG	1 cut(s)	12
Hin1II	CATG	1 cut(s)	378
HinfI	GANTC	2 cut(s)	21, 28
HpaII	CCGG	1 cut(s)	12
Hpy166II	GTNNAC	1 cut(s)	36
Hpy188I	TCNGA	2 cut(s)	102, 199
Hpy188III	TCNNGA	3 cut(s)	25, 172, 250
Hpy8I	GTNNAC	1 cut(s)	36
HpyCH4III	ACNGT	1 cut(s)	211
HpyCH4V	TGCA	2 cut(s)	36, 109
Hsp92II	CATG	1 cut(s)	378
Ksp22I	TGATCA	2 cut(s)	118, 325
Kzo9I	GATC	3 cut(s)	118, 325, 352
LmnI	GCTCC	1 cut(s)	157
LpnPI	CCDG	6 cut(s)	24, 25, 200, 215, 324, 385
MalI	GATC	3 cut(s)	120, 327, 354
MboI	GATC	3 cut(s)	118, 325, 352
MboII	GAAGA	3 cut(s)	140, 158, 212
MflI	RGATCY	1 cut(s)	352
MhlI	GDGCHC	1 cut(s)	38
MlyI	GAGTC	2 cut(s)	15, 22
MnlI	CCTC	2 cut(s)	254, 377
MseI	TTAA	2 cut(s)	338, 418
MslI	CAYNNNNRTG	2 cut(s)	55, 114
MspI	CCGG	1 cut(s)	12
MspR9I	CCNGG	1 cut(s)	13
NciI	CCSGG	1 cut(s)	13
NdeII	GATC	3 cut(s)	118, 325, 352
NlaIII	CATG	1 cut(s)	378
NlaIV	GGNNCC	2 cut(s)	266, 309
OliI	CACNNNNGTG	1 cut(s)	55
PflMI	CCANNNNNTGG	1 cut(s)	380
PleI	GAGTC	2 cut(s)	15, 22
PpsI	GAGTC	2 cut(s)	15, 22
PspN4I	GGNNCC	2 cut(s)	266, 309
PspPI	GGNCC	2 cut(s)	41, 265
PsuI	RGATCY	1 cut(s)	352
RseI	CAYNNNNRTG	2 cut(s)	55, 114
SaqAI	TTAA	2 cut(s)	338, 418
Sau3AI	GATC	3 cut(s)	118, 325, 352
Sau96I	GGNCC	2 cut(s)	41, 265
SchI	GAGTC	2 cut(s)	15, 22
ScrFI	CCNGG	1 cut(s)	13
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	6 cut(s)	8, 143, 208, 219, 242, 338
SfcI	CTRYAG	1 cut(s)	207
SinI	GGWCC	1 cut(s)	265
SmiMI	CAYNNNNRTG	2 cut(s)	55, 114
SmlI	CTYRAG	1 cut(s)	250
SmoI	CTYRAG	1 cut(s)	250
SsiI	CCGC	3 cut(s)	55, 60, 303
StyD4I	CCNGG	1 cut(s)	11
TaaI	ACNGT	1 cut(s)	211
Tru1I	TTAA	2 cut(s)	338, 418
Tru9I	TTAA	2 cut(s)	338, 418
TscAI	CASTG	1 cut(s)	43
TspDTI	ATGAA	2 cut(s)	234, 306
TspRI	CASTG	1 cut(s)	43
Van91I	CCANNNNNTGG	1 cut(s)	380
VneI	GTGCAC	1 cut(s)	34
VpaK11BI	GGWCC	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.