FvH4_4g35980
MYB Family

Myb family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0013661
Physical Location & Seq
Forward (+)
33090503 .. 33094170
3668 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g35980.t1

Sequence Viewer

Length: 921 bp
ATGAGTACTAGTAGCAGCTGTGGAAGAAATGGTGCTGTTAGGCCTTATATAAGATCCAAGGTGCCTCGTCTGAGGTGGACTCCTGAGCTTCATCACTGCTTTGTTCAAGCCATCGAGAGGCTTGGAGGCCATAAAAAGGCTACACCAAAGCTTGTTCTTCAAATCATGGATGTCAAAGGACTCACCATTTCTCATGTCAAAAGCCATCTCCAGATGTTTAGAAGCATGAGGGGTGGTGACCTTAGTAGAGCACCAGATGAGAGTTTAACACATCAAAGAAAGCAAAGTTTTGAAGAGCATAGTGATGGATGTCTTGATCATGAAGTAAATGTTATGGGGTTTCTCTCGGCTTCAAAACCCATCCCGGAATCAGATCCTCAGGTAATCTACAGTGTTCCCCGCCGGTCAAAACCCATCACAGAATCAGATCCTCAGGCCATCTACACTGATCCCAGCCATTCAAAAAGAGCTAGAATCGAGACGACGAGCTGTTCAATCTCAGAGAGGCAGCAGCAATGGAGCCAAACAACACATGAAACGGCACCGTACTCTTATGATCATTATGGCCTGGTGCTGGCAAACGGTGTGTCTCTGTCACAGCCGCAGCATTATCTTTACAACTTCAACAACCCCTTCCTCAAATCTGCATTTCAAGAATCTGACTTCTTCAAGATTGATGAAAAGCATGAAGCGAAACTGCATAAACAGGAGAATACAGGAAGAGCACACAAAGAAGGTGGTGACTGTCAGTTATCCTTGTCTCTCTCGTTACATCATCCCTCTTCTAACACGAGCATTGCTTCTTCAAGTGAAGATATTGGTGGTGCAATATCAGGATTCAACTATAAAGATTGTTCCACCTTTTCTTCGGCAAATCGTGGTGTCGATTTGAATCTTTCCATTGCCCTCTGTGGTAACTGA

Protein Analysis

307

Amino Acids

34.1

Weight (kDa)

8.13

Isoelectric Point (pI)

53.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 23 - 72 2.1e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013661)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g35980
malus_domestica MD13G1013200.v1.1 MD16G1010100.v1.1
prunus_persica Prupe.1G340500_v2.0.a1 Prupe.1G340500_v2.0.a1
pyrus_communis pycom13g01120 pycom16g00990
rosa_chinensis RchiOBHm_Chr4g0445611
rosa_laevigata RLG00000005725
rosa_multiflora Rmu_ssc0000107.1_g000003
rosa_roxburghii Rroxscaffold_5G00386090
rosa_rugosa Rorug04G0363000
rosa_samantha Rh4AG424400 Rh4AG424800 Rh4BG436600 Rh4CG451200 Rh4DG433100
rosa_wichuraiana Rw4G036390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 61, 541
AciI CCGC 2 cut(s) 400, 602
AclWI GGATC 4 cut(s) 48, 368, 422, 443
AfaI GTAC 2 cut(s) 7, 548
AfiI CCNNNNNNNGG 3 cut(s) 117, 136, 574
AhlI ACTAGT 1 cut(s) 8
AjnI CCWGG 1 cut(s) 567
AluBI AGCT 5 cut(s) 18, 88, 151, 470, 489
AluI AGCT 5 cut(s) 18, 88, 151, 470, 489
Alw21I GWGCWC 2 cut(s) 253, 727
Alw26I GTCTC 3 cut(s) 473, 594, 765
AlwI GGATC 4 cut(s) 48, 368, 422, 443
AoxI GGCC 4 cut(s) 41, 127, 435, 565
ApeKI GCWGC 4 cut(s) 15, 508, 511, 604
ArsI GACNNNNNNTTYG 2 cut(s) 572, 604
AsuC2I CCSGG 1 cut(s) 365
AsuHPI GGTGA 3 cut(s) 175, 248, 752
AxyI CCTNAGG 2 cut(s) 378, 432
BanI GGYRCC 2 cut(s) 61, 541
BauI CACGAG 1 cut(s) 790
Bbv12I GWGCWC 2 cut(s) 253, 727
BbvI GCAGC 4 cut(s) 27, 520, 523, 616
BccI CCATC 6 cut(s) 119, 213, 299, 368, 422, 446
BceAI ACGGC 1 cut(s) 555
BciT130I CCWGG 1 cut(s) 569
BclI TGATCA 2 cut(s) 316, 556
BcnI CCSGG 1 cut(s) 365
BcoDI GTCTC 3 cut(s) 473, 594, 765
BcuI ACTAGT 1 cut(s) 8
BfaI CTAG 2 cut(s) 9, 471
BfmI CTRYAG 1 cut(s) 388
BisI GCNGC 5 cut(s) 16, 509, 512, 602, 605
BlsI GCNGC 5 cut(s) 17, 510, 513, 603, 606
BmcAI AGTACT 1 cut(s) 7
Bme1390I CCNGG 2 cut(s) 365, 569
BmiI GGNNCC 3 cut(s) 63, 521, 543
BmrFI CCNGG 2 cut(s) 365, 569
BplI GAGNNNNNCTC 2 cut(s) 64, 96
BpmI CTGGAG 1 cut(s) 194
Bpu10I CCTNAGC 1 cut(s) 84
BpuMI CCSGG 1 cut(s) 365
BsaBI GATNNNNATC 1 cut(s) 891
BsaJI CCNNGG 1 cut(s) 57
Bsc4I CCNNNNNNNGG 3 cut(s) 117, 136, 574
Bse118I RCCGGY 1 cut(s) 402
Bse21I CCTNAGG 2 cut(s) 378, 432
Bse3DI GCAATG 3 cut(s) 521, 795, 900
Bse8I GATNNNNATC 1 cut(s) 891
BseBI CCWGG 1 cut(s) 569
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 4 cut(s) 175, 314, 360, 775
BseJI GATNNNNATC 1 cut(s) 891
BseLI CCNNNNNNNGG 3 cut(s) 117, 136, 574
BseMI GCAATG 3 cut(s) 521, 795, 900
BseMII CTCAG 5 cut(s) 62, 75, 392, 446, 513
BseXI GCAGC 4 cut(s) 27, 520, 523, 616
BseYI CCCAGC 1 cut(s) 452
BshFI GGCC 4 cut(s) 43, 129, 437, 567
BshNI GGYRCC 2 cut(s) 61, 541
BsiHKAI GWGCWC 2 cut(s) 253, 727
BsiSI CCGG 2 cut(s) 365, 403
BslI CCNNNNNNNGG 3 cut(s) 117, 136, 574
BsmAI GTCTC 3 cut(s) 473, 594, 765
BsmBI CGTCTC 1 cut(s) 473
BsnI GGCC 4 cut(s) 43, 129, 437, 567
Bsp1286I GDGCHC 2 cut(s) 253, 727
Bsp143I GATC 6 cut(s) 53, 316, 373, 427, 448, 556
BspACI CCGC 2 cut(s) 400, 602
BspANI GGCC 4 cut(s) 43, 129, 437, 567
BspCNI CTCAG 5 cut(s) 63, 76, 391, 445, 512
BspHI TCATGA 1 cut(s) 319
BspLI GGNNCC 3 cut(s) 63, 521, 543
BspPI GGATC 4 cut(s) 48, 368, 422, 443
BspQI GCTCTTC 2 cut(s) 288, 715
BspT107I GGYRCC 2 cut(s) 61, 541
BsrDI GCAATG 3 cut(s) 521, 795, 900
BsrFI RCCGGY 1 cut(s) 402
BssAI RCCGGY 1 cut(s) 402
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 6 cut(s) 53, 316, 373, 427, 448, 556
BssSI CACGAG 1 cut(s) 790
BssT1I CCWWGG 1 cut(s) 57
Bst2BI CACGAG 1 cut(s) 790
Bst2UI CCWGG 1 cut(s) 569
Bst4CI ACNGT 4 cut(s) 392, 546, 584, 746
Bst6I CTCTTC 3 cut(s) 288, 715, 787
BstC8I GCNNGC 1 cut(s) 576
BstDEI CTNAG 6 cut(s) 71, 84, 242, 378, 432, 499
BstEII GGTNACC 1 cut(s) 236
BstF5I GGATG 4 cut(s) 175, 314, 360, 775
BstKTI GATC 6 cut(s) 56, 319, 376, 430, 451, 559
BstMAI GTCTC 3 cut(s) 473, 594, 765
BstMBI GATC 6 cut(s) 53, 316, 373, 427, 448, 556
BstNI CCWGG 1 cut(s) 569
BstPI GGTNACC 1 cut(s) 236
BstSCI CCNGG 2 cut(s) 363, 567
BstSFI CTRYAG 1 cut(s) 388
BstV1I GCAGC 4 cut(s) 27, 520, 523, 616
BstX2I RGATCY 3 cut(s) 53, 373, 427
BstYI RGATCY 3 cut(s) 53, 373, 427
Bsu36I CCTNAGG 2 cut(s) 378, 432
BsuRI GGCC 4 cut(s) 43, 129, 437, 567
BtsCI GGATG 4 cut(s) 175, 314, 360, 775
BtsI GCAGTG 1 cut(s) 94
BtsIMutI CAGTG 3 cut(s) 94, 397, 444
Cac8I GCNNGC 1 cut(s) 576
CciI TCATGA 1 cut(s) 319
Cfr10I RCCGGY 1 cut(s) 402
Csp6I GTAC 2 cut(s) 6, 547
CspCI CAANNNNNGTGG 2 cut(s) 718, 753
CviAII CATG 6 cut(s) 166, 194, 226, 320, 533, 686
CviQI GTAC 2 cut(s) 6, 547
DdeI CTNAG 6 cut(s) 71, 84, 242, 378, 432, 499
DpnI GATC 6 cut(s) 55, 318, 375, 429, 450, 558
DpnII GATC 6 cut(s) 53, 316, 373, 427, 448, 556
Eam1104I CTCTTC 3 cut(s) 288, 715, 787
EarI CTCTTC 3 cut(s) 288, 715, 787
Eco130I CCWWGG 1 cut(s) 57
Eco147I AGGCCT 1 cut(s) 43
Eco81I CCTNAGG 2 cut(s) 378, 432
Eco91I GGTNACC 1 cut(s) 236
EcoO65I GGTNACC 1 cut(s) 236
EcoRII CCWGG 1 cut(s) 567
EcoT14I CCWWGG 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 57
Esp3I CGTCTC 1 cut(s) 473
FaeI CATG 6 cut(s) 169, 197, 229, 323, 536, 689
FatI CATG 6 cut(s) 165, 193, 225, 319, 532, 685
FauI CCCGC 1 cut(s) 407
FbaI TGATCA 2 cut(s) 316, 556
Fnu4HI GCNGC 5 cut(s) 16, 509, 512, 602, 605
FokI GGATG 4 cut(s) 182, 321, 347, 762
Fsp4HI GCNGC 5 cut(s) 16, 509, 512, 602, 605
FspBI CTAG 2 cut(s) 9, 471
GluI GCNGC 5 cut(s) 16, 509, 512, 602, 605
GsaI CCCAGC 1 cut(s) 456
GsuI CTGGAG 1 cut(s) 194
HaeIII GGCC 4 cut(s) 43, 129, 437, 567
HapII CCGG 2 cut(s) 365, 403
Hin1II CATG 6 cut(s) 169, 197, 229, 323, 536, 689
HindIII AAGCTT 1 cut(s) 149
HinfI GANTC 8 cut(s) 79, 180, 368, 422, 474, 656, 837, 892
HpaII CCGG 2 cut(s) 365, 403
HphI GGTGA 3 cut(s) 175, 248, 752
Hpy166II GTNNAC 1 cut(s) 78
Hpy188I TCNGA 5 cut(s) 72, 373, 427, 502, 661
Hpy188III TCNNGA 9 cut(s) 83, 115, 211, 314, 320, 478, 653, 670, 834
Hpy8I GTNNAC 1 cut(s) 78
Hpy99I CGWCG 1 cut(s) 487
HpyAV CCTTC 2 cut(s) 643, 728
HpyCH4III ACNGT 4 cut(s) 392, 546, 584, 746
HpyCH4V TGCA 3 cut(s) 647, 700, 827
HpyF3I CTNAG 6 cut(s) 71, 84, 242, 378, 432, 499
Hsp92II CATG 6 cut(s) 169, 197, 229, 323, 536, 689
Ksp22I TGATCA 2 cut(s) 316, 556
Kzo9I GATC 6 cut(s) 53, 316, 373, 427, 448, 556
LguI GCTCTTC 2 cut(s) 288, 715
LmnI GCTCC 1 cut(s) 519
Lsp1109I GCAGC 4 cut(s) 27, 520, 523, 616
MaeI CTAG 2 cut(s) 9, 471
MaeIII GTNAC 5 cut(s) 236, 594, 740, 768, 914
MalI GATC 6 cut(s) 55, 318, 375, 429, 450, 558
MboI GATC 6 cut(s) 53, 316, 373, 427, 448, 556
MboII GAAGA 9 cut(s) 36, 149, 305, 658, 732, 774, 795, 824, 858
MflI RGATCY 3 cut(s) 53, 373, 427
MhlI GDGCHC 2 cut(s) 253, 727
MlyI GAGTC 2 cut(s) 73, 174
MseI TTAA 1 cut(s) 266
MslI CAYNNNNRTG 1 cut(s) 303
MspA1I CMGCKG 1 cut(s) 18
MspI CCGG 2 cut(s) 365, 403
MspR9I CCNGG 2 cut(s) 365, 569
MvaI CCWGG 1 cut(s) 569
NciI CCSGG 1 cut(s) 365
NdeII GATC 6 cut(s) 53, 316, 373, 427, 448, 556
NlaIII CATG 6 cut(s) 169, 197, 229, 323, 536, 689
NlaIV GGNNCC 3 cut(s) 63, 521, 543
NmeAIII GCCGAG 1 cut(s) 326
NmuCI GTSAC 3 cut(s) 236, 594, 740
PagI TCATGA 1 cut(s) 319
PceI AGGCCT 1 cut(s) 43
PciSI GCTCTTC 2 cut(s) 288, 715
PfeI GAWTC 6 cut(s) 368, 422, 474, 656, 837, 892
PfoI TCCNGGA 1 cut(s) 363
PkrI GCNGC 5 cut(s) 17, 510, 513, 603, 606
PleI GAGTC 2 cut(s) 73, 174
PpsI GAGTC 2 cut(s) 73, 174
Psp6I CCWGG 1 cut(s) 567
PspEI GGTNACC 1 cut(s) 236
PspFI CCCAGC 1 cut(s) 452
PspGI CCWGG 1 cut(s) 567
PspN4I GGNNCC 3 cut(s) 63, 521, 543
PsuI RGATCY 3 cut(s) 53, 373, 427
PvuII CAGCTG 1 cut(s) 18
RsaI GTAC 2 cut(s) 7, 548
RsaNI GTAC 2 cut(s) 6, 547
RseI CAYNNNNRTG 1 cut(s) 303
SapI GCTCTTC 2 cut(s) 288, 715
SaqAI TTAA 1 cut(s) 266
SatI GCNGC 5 cut(s) 16, 509, 512, 602, 605
Sau3AI GATC 6 cut(s) 53, 316, 373, 427, 448, 556
ScaI AGTACT 1 cut(s) 7
SchI GAGTC 2 cut(s) 73, 174
ScrFI CCNGG 2 cut(s) 365, 569
SduI GDGCHC 2 cut(s) 253, 727
SfcI CTRYAG 1 cut(s) 388
SmiMI CAYNNNNRTG 1 cut(s) 303
SpeI ACTAGT 1 cut(s) 8
SseBI AGGCCT 1 cut(s) 43
SsiI CCGC 2 cut(s) 400, 602
SspMI CTAG 2 cut(s) 9, 471
StuI AGGCCT 1 cut(s) 43
StyD4I CCNGG 2 cut(s) 363, 567
StyI CCWWGG 1 cut(s) 57
TaaI ACNGT 4 cut(s) 392, 546, 584, 746
TaqI TCGA 3 cut(s) 114, 477, 885
TatI WGTACW 1 cut(s) 5
TauI GCSGC 1 cut(s) 604
TfiI GAWTC 6 cut(s) 368, 422, 474, 656, 837, 892
Tru1I TTAA 1 cut(s) 266
Tru9I TTAA 1 cut(s) 266
TscAI CASTG 3 cut(s) 101, 397, 451
TseFI GTSAC 3 cut(s) 236, 594, 740
TseI GCWGC 4 cut(s) 15, 508, 511, 604
Tsp45I GTSAC 3 cut(s) 236, 594, 740
TspDTI ATGAA 5 cut(s) 80, 336, 549, 693, 702
TspRI CASTG 3 cut(s) 101, 397, 451
XspI CTAG 2 cut(s) 9, 471
ZrmI AGTACT 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.