Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013661

Physical Location & Seq

Genomic Coordinates Forward (+)

32013578 .. 32017593

Gene Structure 4016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G340500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGACTAGTTGTAGTGCAAGGAACGGTGCTGTGAGGCAGTATGTAAGATCAAAGGTGCCTCGTCTGAGATGGACCCCTGAGCTTCATCACTGCTTTCTTCATTCCATTGAGAGGCTCGGAGGCCATAAAAAGGCTACACCAAAACTTGTTCTTCAGTTGATGGATGTCAAAGGGCTCACCATTTCTCATGTCAAAAGCCATCTCCAGATGTACAGAAGCATGAGGGGCGACCTGGGTACTAGACAACAAGTGACAGATAGGAGTTGCACGCAACCAAGAAAACAATTGTTTGAAGAGCATGATGATGGGTGTCTTGATGAATTAAATGGTGTGAGTTTTTACCCATCTTCCAAATCTATCAGAGAATCAGATTCTCAGCTCATCTACAGTACTCCCCGCCGTTCAAAAAGAGCTAGAACCGAGACGACGAGTTCAATCTCAGAGGGCCTGCAGCAGCAATGCAGCCAAGGAATATATGAGACAGTCTCAAATCCGTACTCTTTTGATGATAATGTGTTGGCAATGGCTCAACAACAGCGTGGGGGATTTAAGGAGCCTAACCCCTCAGCCTTGTCTCTGCCACAACCTCATCTTCATTACAACTTCAACCACCCCTCCTCCCAATTTTCTCTGCAAGAATCTGACTTCTTCAAGGTTACCAAACCAGAGGCAAGAGCAGATGCTGATCAAGACAATGAAGACGGTGATTGTCAACTATCACTCTCTCTCTCATTACATCATCCTTCTTCCCACAAGAGTAAGAGTAATGCTTCTTCAAGTGAGTTCAGTGGTGCAATCTCATCATATTCCTCCTCGAGGTCCAACTATAAAGATTGCTCCACCTCTTCTTCTGGGAACCATCGCAGTATTAATTTAAATCTTTCCATTGCCCTCTGCGGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

302

Amino Acids

33.63

Weight (kDa)

8.86

Isoelectric Point (pI)

58.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013661)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35980
malus_domestica	MD13G1013200.v1.1 MD16G1010100.v1.1
prunus_persica	Prupe.1G340500_v2.0.a1 Prupe.1G340500_v2.0.a1
pyrus_communis	pycom13g01120 pycom16g00990
rosa_chinensis	RchiOBHm_Chr4g0445611
rosa_laevigata	RLG00000005725
rosa_multiflora	Rmu_ssc0000107.1_g000003
rosa_roxburghii	Rroxscaffold_5G00386090
rosa_rugosa	Rorug04G0363000
rosa_samantha	Rh4AG424400 Rh4AG424800 Rh4BG436600 Rh4CG451200 Rh4DG433100
rosa_wichuraiana	Rw4G036390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	814
AccB1I	GGYRCC	1 cut(s)	55
AciI	CCGC	2 cut(s)	397, 897
AcuI	CTGAAG	1 cut(s)	137
AfaI	GTAC	4 cut(s)	212, 238, 391, 497
AfiI	CCNNNNNNNGG	3 cut(s)	111, 130, 816
AgsI	TTSAA	6 cut(s)	293, 405, 435, 607, 652, 777
AhlI	ACTAGT	1 cut(s)	5
AjnI	CCWGG	1 cut(s)	231
AluBI	AGCT	3 cut(s)	82, 379, 413
AluI	AGCT	3 cut(s)	82, 379, 413
Alw26I	GTCTC	4 cut(s)	416, 473, 490, 579
AlwNI	CAGNNNCTG	1 cut(s)	683
Ama87I	CYCGRG	1 cut(s)	814
AoxI	GGCC	2 cut(s)	121, 445
ApeKI	GCWGC	3 cut(s)	451, 454, 462
AseI	ATTAAT	1 cut(s)	870
AspS9I	GGNCC	3 cut(s)	72, 445, 819
AsuHPI	GGTGA	2 cut(s)	169, 716
AvaI	CYCGRG	1 cut(s)	814
AvaII	GGWCC	2 cut(s)	72, 819
BanI	GGYRCC	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	177
BarI	GAAGNNNNNNTAC	2 cut(s)	757, 789
BbsI	GAAGAC	1 cut(s)	705
BbvCI	CCTCAGC	1 cut(s)	565
BbvI	GCAGC	3 cut(s)	463, 466, 474
BccI	CCATC	6 cut(s)	63, 154, 207, 299, 352, 867
BceAI	ACGGC	1 cut(s)	384
BciT130I	CCWGG	1 cut(s)	233
BclI	TGATCA	1 cut(s)	685
BcoDI	GTCTC	4 cut(s)	416, 473, 490, 579
BcuI	ACTAGT	1 cut(s)	5
BfaI	CTAG	3 cut(s)	6, 240, 414
BfmI	CTRYAG	2 cut(s)	385, 449
BisI	GCNGC	3 cut(s)	452, 455, 463
BlsI	GCNGC	3 cut(s)	453, 456, 464
BmcAI	AGTACT	1 cut(s)	391
Bme1390I	CCNGG	1 cut(s)	233
Bme18I	GGWCC	2 cut(s)	72, 819
BmeT110I	CYCGRG	1 cut(s)	814
BmgT120I	GGNCC	3 cut(s)	72, 445, 819
BmiI	GGNNCC	4 cut(s)	57, 74, 555, 857
BmrFI	CCNGG	1 cut(s)	233
BmsI	GCATC	1 cut(s)	670
BpiI	GAAGAC	1 cut(s)	705
BplI	GAGNNNNNCTC	2 cut(s)	470, 502
BpmI	CTGGAG	1 cut(s)	188
Bpu10I	CCTNAGC	2 cut(s)	78, 565
BsaBI	GATNNNNATC	1 cut(s)	684
BsaJI	CCNNGG	2 cut(s)	232, 466
BsaXI	ACNNNNNCTCC	4 cut(s)	599, 602, 629, 632
Bsc4I	CCNNNNNNNGG	3 cut(s)	111, 130, 816
Bse3DI	GCAATG	3 cut(s)	464, 528, 885
Bse8I	GATNNNNATC	1 cut(s)	684
BseBI	CCWGG	1 cut(s)	233
BseDI	CCNNGG	2 cut(s)	232, 466
BseGI	GGATG	2 cut(s)	169, 739
BseJI	GATNNNNATC	1 cut(s)	684
BseLI	CCNNNNNNNGG	3 cut(s)	111, 130, 816
BseMI	GCAATG	3 cut(s)	464, 528, 885
BseMII	CTCAG	5 cut(s)	56, 69, 389, 453, 579
BseRI	GAGGAG	2 cut(s)	607, 802
BseXI	GCAGC	3 cut(s)	463, 466, 474
BshFI	GGCC	2 cut(s)	123, 447
BshNI	GGYRCC	1 cut(s)	55
BsiHKCI	CYCGRG	1 cut(s)	814
BslI	CCNNNNNNNGG	3 cut(s)	111, 130, 816
BsmAI	GTCTC	4 cut(s)	416, 473, 490, 579
BsmBI	CGTCTC	1 cut(s)	416
BsnI	GGCC	2 cut(s)	123, 447
BsoBI	CYCGRG	1 cut(s)	814
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp1407I	TGTACA	1 cut(s)	210
Bsp143I	GATC	2 cut(s)	47, 685
BspACI	CCGC	2 cut(s)	397, 897
BspANI	GGCC	2 cut(s)	123, 447
BspCNI	CTCAG	5 cut(s)	57, 70, 388, 452, 578
BspLI	GGNNCC	4 cut(s)	57, 74, 555, 857
BspMAI	CTGCAG	1 cut(s)	453
BspQI	GCTCTTC	1 cut(s)	288
BspT107I	GGYRCC	1 cut(s)	55
BsrDI	GCAATG	3 cut(s)	464, 528, 885
BsrGI	TGTACA	1 cut(s)	210
BssECI	CCNNGG	2 cut(s)	232, 466
BssMI	GATC	2 cut(s)	47, 685
BssT1I	CCWWGG	1 cut(s)	466
Bst2UI	CCWGG	1 cut(s)	233
Bst4CI	ACNGT	4 cut(s)	26, 389, 484, 704
Bst6I	CTCTTC	2 cut(s)	288, 850
BstAUI	TGTACA	1 cut(s)	210
BstC8I	GCNNGC	2 cut(s)	269, 449
BstDEI	CTNAG	5 cut(s)	65, 78, 375, 439, 565
BstEII	GGTNACC	1 cut(s)	655
BstENI	CCTNNNNNAGG	1 cut(s)	814
BstF5I	GGATG	2 cut(s)	169, 739
BstKTI	GATC	2 cut(s)	50, 688
BstMAI	GTCTC	4 cut(s)	416, 473, 490, 579
BstMBI	GATC	2 cut(s)	47, 685
BstMWI	GCNNNNNNNGC	1 cut(s)	225
BstNI	CCWGG	1 cut(s)	233
BstPI	GGTNACC	1 cut(s)	655
BstSCI	CCNGG	1 cut(s)	231
BstSFI	CTRYAG	2 cut(s)	385, 449
BstV1I	GCAGC	3 cut(s)	463, 466, 474
BstV2I	GAAGAC	1 cut(s)	705
BsuRI	GGCC	2 cut(s)	123, 447
BtgZI	GCGATG	1 cut(s)	845
BtsCI	GGATG	2 cut(s)	169, 739
BtsI	GCAGTG	1 cut(s)	88
BtsIMutI	CAGTG	2 cut(s)	88, 793
Cac8I	GCNNGC	2 cut(s)	269, 449
CaiI	CAGNNNCTG	1 cut(s)	683
Cfr13I	GGNCC	3 cut(s)	72, 445, 819
Csp6I	GTAC	4 cut(s)	211, 237, 390, 496
CviAII	CATG	3 cut(s)	188, 220, 299
CviQI	GTAC	4 cut(s)	211, 237, 390, 496
DdeI	CTNAG	5 cut(s)	65, 78, 375, 439, 565
DpnI	GATC	2 cut(s)	49, 687
DpnII	GATC	2 cut(s)	47, 685
DraI	TTTAAA	1 cut(s)	876
Eam1104I	CTCTTC	2 cut(s)	288, 850
EarI	CTCTTC	2 cut(s)	288, 850
Eco130I	CCWWGG	1 cut(s)	466
Eco24I	GRGCYC	1 cut(s)	177
Eco47I	GGWCC	2 cut(s)	72, 819
Eco57I	CTGAAG	1 cut(s)	137
Eco88I	CYCGRG	1 cut(s)	814
Eco91I	GGTNACC	1 cut(s)	655
EcoNI	CCTNNNNNAGG	1 cut(s)	814
EcoO109I	RGGNCCY	1 cut(s)	445
EcoO65I	GGTNACC	1 cut(s)	655
EcoRII	CCWGG	1 cut(s)	231
EcoT14I	CCWWGG	1 cut(s)	466
EcoT38I	GRGCYC	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	466
Esp3I	CGTCTC	1 cut(s)	416
FaeI	CATG	3 cut(s)	191, 223, 302
FaiI	YATR	9 cut(s)	42, 126, 189, 221, 300, 475, 477, 805, 828
FatI	CATG	3 cut(s)	187, 219, 298
FauI	CCCGC	1 cut(s)	404
FbaI	TGATCA	1 cut(s)	685
Fnu4HI	GCNGC	3 cut(s)	452, 455, 463
FokI	GGATG	2 cut(s)	176, 726
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	3 cut(s)	452, 455, 463
FspBI	CTAG	3 cut(s)	6, 240, 414
GluI	GCNGC	3 cut(s)	452, 455, 463
GsuI	CTGGAG	1 cut(s)	188
HaeIII	GGCC	2 cut(s)	123, 447
Hin1II	CATG	3 cut(s)	191, 223, 302
HincII	GTYRAC	1 cut(s)	713
HindII	GTYRAC	1 cut(s)	713
HinfI	GANTC	3 cut(s)	365, 371, 638
HphI	GGTGA	2 cut(s)	169, 716
Hpy166II	GTNNAC	1 cut(s)	713
Hpy188I	TCNGA	6 cut(s)	66, 119, 362, 370, 442, 643
Hpy188III	TCNNGA	3 cut(s)	205, 314, 689
Hpy8I	GTNNAC	1 cut(s)	713
Hpy99I	CGWCG	1 cut(s)	430
HpyAV	CCTTC	1 cut(s)	753
HpyCH4III	ACNGT	4 cut(s)	26, 389, 484, 704
HpyCH4V	TGCA	6 cut(s)	17, 267, 451, 462, 634, 794
HpyF10VI	GCNNNNNNNGC	1 cut(s)	225
HpyF3I	CTNAG	5 cut(s)	65, 78, 375, 439, 565
Hsp92II	CATG	3 cut(s)	191, 223, 302
Ksp22I	TGATCA	1 cut(s)	685
Kzo9I	GATC	2 cut(s)	47, 685
LguI	GCTCTTC	1 cut(s)	288
LmnI	GCTCC	2 cut(s)	553, 842
LpnPI	CCDG	7 cut(s)	90, 218, 218, 245, 461, 678, 837
Lsp1109I	GCAGC	3 cut(s)	463, 466, 474
LweI	GCATC	1 cut(s)	670
MaeI	CTAG	3 cut(s)	6, 240, 414
MaeIII	GTNAC	2 cut(s)	250, 655
MalI	GATC	2 cut(s)	49, 687
MboI	GATC	2 cut(s)	47, 685
MfeI	CAATTG	1 cut(s)	284
MhlI	GDGCHC	1 cut(s)	177
MluCI	AATT	4 cut(s)	284, 320, 623, 871
MmeI	TCCRAC	1 cut(s)	846
MseI	TTAA	4 cut(s)	323, 549, 870, 875
MslI	CAYNNNNRTG	1 cut(s)	303
MspR9I	CCNGG	1 cut(s)	233
MunI	CAATTG	1 cut(s)	284
MvaI	CCWGG	1 cut(s)	233
MwoI	GCNNNNNNNGC	1 cut(s)	225
NdeII	GATC	2 cut(s)	47, 685
NlaIII	CATG	3 cut(s)	191, 223, 302
NlaIV	GGNNCC	4 cut(s)	57, 74, 555, 857
NmuCI	GTSAC	1 cut(s)	250
PaeR7I	CTCGAG	1 cut(s)	814
PciSI	GCTCTTC	1 cut(s)	288
PfeI	GAWTC	3 cut(s)	365, 371, 638
PkrI	GCNGC	3 cut(s)	453, 456, 464
PshBI	ATTAAT	1 cut(s)	870
Psp6I	CCWGG	1 cut(s)	231
PspEI	GGTNACC	1 cut(s)	655
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	4 cut(s)	57, 74, 555, 857
PspPI	GGNCC	3 cut(s)	72, 445, 819
PspXI	VCTCGAGB	1 cut(s)	814
PstI	CTGCAG	1 cut(s)	453
PstNI	CAGNNNCTG	1 cut(s)	683
RsaI	GTAC	4 cut(s)	212, 238, 391, 497
RsaNI	GTAC	4 cut(s)	211, 237, 390, 496
RseI	CAYNNNNRTG	1 cut(s)	303
SapI	GCTCTTC	1 cut(s)	288
SaqAI	TTAA	4 cut(s)	323, 549, 870, 875
SatI	GCNGC	3 cut(s)	452, 455, 463
Sau3AI	GATC	2 cut(s)	47, 685
Sau96I	GGNCC	3 cut(s)	72, 445, 819
ScaI	AGTACT	1 cut(s)	391
ScrFI	CCNGG	1 cut(s)	233
SduI	GDGCHC	1 cut(s)	177
SetI	ASST	9 cut(s)	57, 84, 234, 381, 415, 589, 657, 821, 845
SfaNI	GCATC	1 cut(s)	670
SfcI	CTRYAG	2 cut(s)	385, 449
Sfr274I	CTCGAG	1 cut(s)	814
SinI	GGWCC	2 cut(s)	72, 819
SlaI	CTCGAG	1 cut(s)	814
SmiI	ATTTAAAT	1 cut(s)	876
SmiMI	CAYNNNNRTG	1 cut(s)	303
SmlI	CTYRAG	1 cut(s)	814
SmoI	CTYRAG	1 cut(s)	814
SpeI	ACTAGT	1 cut(s)	5
Sse9I	AATT	4 cut(s)	284, 320, 623, 871
SsiI	CCGC	2 cut(s)	397, 897
SspMI	CTAG	3 cut(s)	6, 240, 414
StyD4I	CCNGG	1 cut(s)	231
StyI	CCWWGG	1 cut(s)	466
SwaI	ATTTAAAT	1 cut(s)	876
TaaI	ACNGT	4 cut(s)	26, 389, 484, 704
TaqI	TCGA	1 cut(s)	815
TasI	AATT	4 cut(s)	284, 320, 623, 871
TatI	WGTACW	2 cut(s)	210, 389
TfiI	GAWTC	3 cut(s)	365, 371, 638
Tru1I	TTAA	4 cut(s)	323, 549, 870, 875
Tru9I	TTAA	4 cut(s)	323, 549, 870, 875
TscAI	CASTG	2 cut(s)	95, 793
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	3 cut(s)	451, 454, 462
Tsp45I	GTSAC	1 cut(s)	250
TspDTI	ATGAA	5 cut(s)	74, 89, 333, 584, 711
TspGWI	ACGGA	1 cut(s)	483
TspRI	CASTG	2 cut(s)	95, 793
VpaK11BI	GGWCC	2 cut(s)	72, 819
VspI	ATTAAT	1 cut(s)	870
XagI	CCTNNNNNAGG	1 cut(s)	814
XhoI	CTCGAG	1 cut(s)	814
XspI	CTAG	3 cut(s)	6, 240, 414
ZrmI	AGTACT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.