MD16G1010100.v1.1
MYB Family

Myb family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0013661
Physical Location & Seq
Reverse (-)
783015 .. 786732
3718 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1010100.v1.1.491

Sequence Viewer

Length: 840 bp
ATGACTACAAGTAGTTGCAGTGCAAGAAACGGCGCCGTCAGGCAGTATGTGAGATCAAAGGTGCCTCGTTTGAGATGGACTCCTGAGCTTCATCGTTGCTTTCTTCAGGCCATTGAAAGGCTTGGAGGCCATAAAAAAGCTACTCCAAAACTTGTTCTTCAGTTGATGGATGTCAAAGGGCTCACCATTTCTCATGTCAAAAGCCATCTCCAGATGTATAGAAGCATGAGAGGCGATCCGATTATAAGACAAGATAGGGTGCAAACAAGAAAACTGCATTCGTTTGAAGAGGCTGAGGATGATGGGTGTGTTGAAGAAGTAAATGGTTTGAGCTTTTACCCATCTTCCAAACCCACCAGAGAATCGGATTCCCAGGTCATCTGCAATCCCCGCCGTTCAAAAAGAGCTAGAACCGAGACGATGGGTTCAAACATCTCAGAGGGTTTGCAGCAGCAGCAATGCAGCAAAGGTGGAATATATGAGACAGTGTCAAATCCGTACTCTTTTGATGATTACGTGCTGGCATTGGGAATAAAGGAGAACCCTCACCCATCAGCCTTCAAAATTGCTTTGCAAGAATCTGATTTCTTGAAGGTTGCCACCTTACCAGAGGCAGGAGGAGCACACGTCGAAGACCATCATGAAGCTGGCCAATGTGAACTATCACTGTCACTCTCGTTACATCAGCCCTCCTCCCACAAGAGTAATGCTTCTTCAAGTGACTTCAGTGGTGCAATCTCATCGTCATACTCTAGGCCTAACTCCAAAGACTGCTCCGCTTCTTCTTCCGGGAATCGGAATCTTAATCTGAATCTTTCGATTGCTCTCTGCGGTAACTGA

Protein Analysis

280

Amino Acids

30.75

Weight (kDa)

8.75

Isoelectric Point (pI)

50.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 23 - 74 1e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013661)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g35980
malus_domestica MD13G1013200.v1.1 MD16G1010100.v1.1
prunus_persica Prupe.1G340500_v2.0.a1 Prupe.1G340500_v2.0.a1
pyrus_communis pycom13g01120 pycom16g00990
rosa_chinensis RchiOBHm_Chr4g0445611
rosa_laevigata RLG00000005725
rosa_multiflora Rmu_ssc0000107.1_g000003
rosa_roxburghii Rroxscaffold_5G00386090
rosa_rugosa Rorug04G0363000
rosa_samantha Rh4AG424400 Rh4AG424800 Rh4BG436600 Rh4CG451200 Rh4DG433100
rosa_wichuraiana Rw4G036390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 245
AccB1I GGYRCC 2 cut(s) 32, 61
AciI CCGC 3 cut(s) 391, 777, 831
AclWI GGATC 1 cut(s) 230
AcoI YGGCCR 1 cut(s) 649
AcuI CTGAAG 3 cut(s) 89, 143, 709
AcyI GRCGYC 1 cut(s) 33
AfaI GTAC 1 cut(s) 500
AfiI CCNNNNNNNGG 3 cut(s) 117, 614, 795
AflIII ACRYGT 1 cut(s) 625
AgsI TTSAA 8 cut(s) 116, 287, 314, 399, 429, 562, 592, 717
AjiI CACGTC 1 cut(s) 628
AjnI CCWGG 1 cut(s) 372
AluBI AGCT 5 cut(s) 88, 140, 333, 407, 647
AluI AGCT 5 cut(s) 88, 140, 333, 407, 647
Alw21I GWGCWC 1 cut(s) 625
Alw26I GTCTC 2 cut(s) 410, 476
AlwI GGATC 1 cut(s) 230
AoxI GGCC 4 cut(s) 108, 127, 649, 755
ApeKI GCWGC 4 cut(s) 448, 451, 454, 462
AspLEI GCGC 1 cut(s) 35
AsuC2I CCSGG 1 cut(s) 790
AsuHPI GGTGA 2 cut(s) 175, 539
BalI TGGCCA 1 cut(s) 651
BanI GGYRCC 2 cut(s) 32, 61
BanII GRGCYC 1 cut(s) 183
BarI GAAGNNNNNNTAC 2 cut(s) 697, 729
BbsI GAAGAC 1 cut(s) 639
Bbv12I GWGCWC 1 cut(s) 625
BbvCI CCTCAGC 1 cut(s) 294
BbvI GCAGC 4 cut(s) 460, 463, 466, 474
BccI CCATC 8 cut(s) 69, 160, 213, 296, 349, 415, 559, 645
BceAI ACGGC 3 cut(s) 20, 46, 378
BcgI CGANNNNNNTGC 2 cut(s) 723, 757
BciT130I CCWGG 1 cut(s) 374
BcnI CCSGG 1 cut(s) 790
BcoDI GTCTC 2 cut(s) 410, 476
BfaI CTAG 2 cut(s) 408, 753
BfoI RGCGCY 1 cut(s) 36
BisI GCNGC 4 cut(s) 449, 452, 455, 463
BlsI GCNGC 4 cut(s) 450, 453, 456, 464
Bme1390I CCNGG 2 cut(s) 374, 790
BmgBI CACGTC 1 cut(s) 628
BmiI GGNNCC 2 cut(s) 34, 63
BmrFI CCNGG 2 cut(s) 374, 790
BpiI GAAGAC 1 cut(s) 639
BplI GAGNNNNNCTC 2 cut(s) 64, 96
BpmI CTGGAG 1 cut(s) 194
Bpu10I CCTNAGC 2 cut(s) 84, 294
BpuMI CCSGG 1 cut(s) 790
BsaAI YACGTR 1 cut(s) 517
BsaHI GRCGYC 1 cut(s) 33
BsaJI CCNNGG 1 cut(s) 372
BsaXI ACNNNNNCTCC 2 cut(s) 612, 642
Bsc4I CCNNNNNNNGG 3 cut(s) 117, 614, 795
Bse3DI GCAATG 1 cut(s) 464
BseBI CCWGG 1 cut(s) 374
BseDI CCNNGG 1 cut(s) 372
BseGI GGATG 2 cut(s) 175, 304
BseLI CCNNNNNNNGG 3 cut(s) 117, 614, 795
BseMI GCAATG 1 cut(s) 464
BseMII CTCAG 3 cut(s) 75, 285, 450
BseRI GAGGAG 2 cut(s) 633, 682
BseXI GCAGC 4 cut(s) 460, 463, 466, 474
BshFI GGCC 4 cut(s) 110, 129, 651, 757
BshNI GGYRCC 2 cut(s) 32, 61
BsiHKAI GWGCWC 1 cut(s) 625
BsiSI CCGG 1 cut(s) 789
BslI CCNNNNNNNGG 3 cut(s) 117, 614, 795
BsmAI GTCTC 2 cut(s) 410, 476
BsmBI CGTCTC 1 cut(s) 410
BsmI GAATGC 1 cut(s) 277
BsnI GGCC 4 cut(s) 110, 129, 651, 757
Bsp1286I GDGCHC 2 cut(s) 183, 625
Bsp143I GATC 2 cut(s) 53, 235
BspACI CCGC 3 cut(s) 391, 777, 831
BspANI GGCC 4 cut(s) 110, 129, 651, 757
BspCNI CTCAG 3 cut(s) 76, 286, 449
BspHI TCATGA 1 cut(s) 640
BspLI GGNNCC 2 cut(s) 34, 63
BspPI GGATC 1 cut(s) 230
BspT107I GGYRCC 2 cut(s) 32, 61
BsrDI GCAATG 1 cut(s) 464
BssECI CCNNGG 1 cut(s) 372
BssMI GATC 2 cut(s) 53, 235
BssNI GRCGYC 1 cut(s) 33
Bst2UI CCWGG 1 cut(s) 374
Bst4CI ACNGT 2 cut(s) 487, 669
Bst6I CTCTTC 1 cut(s) 282
BstACI GRCGYC 1 cut(s) 33
BstBAI YACGTR 1 cut(s) 517
BstC8I GCNNGC 2 cut(s) 522, 649
BstDEI CTNAG 3 cut(s) 84, 294, 436
BstF5I GGATG 2 cut(s) 175, 304
BstH2I RGCGCY 1 cut(s) 36
BstHHI GCGC 1 cut(s) 35
BstKTI GATC 2 cut(s) 56, 238
BstMAI GTCTC 2 cut(s) 410, 476
BstMBI GATC 2 cut(s) 53, 235
BstMWI GCNNNNNNNGC 4 cut(s) 231, 390, 454, 620
BstNI CCWGG 1 cut(s) 374
BstSCI CCNGG 2 cut(s) 372, 788
BstV1I GCAGC 4 cut(s) 460, 463, 466, 474
BstV2I GAAGAC 1 cut(s) 639
BsuRI GGCC 4 cut(s) 110, 129, 651, 757
BtrI CACGTC 1 cut(s) 628
BtsCI GGATG 2 cut(s) 175, 304
BtsI GCAGTG 1 cut(s) 25
BtsIMutI CAGTG 4 cut(s) 25, 492, 665, 733
Cac8I GCNNGC 2 cut(s) 522, 649
CciI TCATGA 1 cut(s) 640
CfoI GCGC 1 cut(s) 35
Csp6I GTAC 1 cut(s) 499
CviAII CATG 3 cut(s) 194, 226, 641
CviQI GTAC 1 cut(s) 499
DdeI CTNAG 3 cut(s) 84, 294, 436
DinI GGCGCC 1 cut(s) 34
DpnI GATC 2 cut(s) 55, 237
DpnII GATC 2 cut(s) 53, 235
EaeI YGGCCR 1 cut(s) 649
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
Eco147I AGGCCT 1 cut(s) 757
Eco24I GRGCYC 1 cut(s) 183
Eco57I CTGAAG 3 cut(s) 89, 143, 709
EcoRII CCWGG 1 cut(s) 372
EcoT38I GRGCYC 1 cut(s) 183
EgeI GGCGCC 1 cut(s) 34
EheI GGCGCC 1 cut(s) 34
Esp3I CGTCTC 1 cut(s) 410
FaeI CATG 3 cut(s) 197, 229, 644
FatI CATG 3 cut(s) 193, 225, 640
FauI CCCGC 1 cut(s) 398
Fnu4HI GCNGC 4 cut(s) 449, 452, 455, 463
FokI GGATG 2 cut(s) 182, 311
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 4 cut(s) 449, 452, 455, 463
FspBI CTAG 2 cut(s) 408, 753
GlaI GCGC 1 cut(s) 34
GluI GCNGC 4 cut(s) 449, 452, 455, 463
GsuI CTGGAG 1 cut(s) 194
HaeII RGCGCY 1 cut(s) 36
HaeIII GGCC 4 cut(s) 110, 129, 651, 757
HapII CCGG 1 cut(s) 789
HhaI GCGC 1 cut(s) 35
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 3 cut(s) 197, 229, 644
Hin6I GCGC 1 cut(s) 33
HinP1I GCGC 1 cut(s) 33
HinfI GANTC 7 cut(s) 79, 362, 368, 578, 793, 799, 811
HpaII CCGG 1 cut(s) 789
HphI GGTGA 2 cut(s) 175, 539
Hpy166II GTNNAC 1 cut(s) 659
Hpy188I TCNGA 6 cut(s) 240, 367, 439, 583, 798, 810
Hpy188III TCNNGA 4 cut(s) 83, 211, 589, 641
Hpy8I GTNNAC 1 cut(s) 659
Hpy99I CGWCG 1 cut(s) 632
HpyAV CCTTC 2 cut(s) 568, 586
HpyCH4III ACNGT 2 cut(s) 487, 669
HpyCH4IV ACGT 2 cut(s) 516, 627
HpyCH4V TGCA 9 cut(s) 18, 23, 262, 277, 384, 448, 462, 574, 734
HpyF10VI GCNNNNNNNGC 4 cut(s) 231, 390, 454, 620
HpyF3I CTNAG 3 cut(s) 84, 294, 436
HpySE526I ACGT 2 cut(s) 516, 627
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 3 cut(s) 197, 229, 644
HspAI GCGC 1 cut(s) 33
KasI GGCGCC 1 cut(s) 32
Kzo9I GATC 2 cut(s) 53, 235
LmnI GCTCC 2 cut(s) 620, 779
Lsp1109I GCAGC 4 cut(s) 460, 463, 466, 474
MaeI CTAG 2 cut(s) 408, 753
MaeII ACGT 2 cut(s) 516, 627
MaeIII GTNAC 4 cut(s) 669, 678, 719, 833
MalI GATC 2 cut(s) 55, 237
MboI GATC 2 cut(s) 53, 235
MboII GAAGA 9 cut(s) 95, 149, 299, 326, 336, 644, 705, 774, 777
MhlI GDGCHC 2 cut(s) 183, 625
MlsI TGGCCA 1 cut(s) 651
MluCI AATT 1 cut(s) 564
MluNI TGGCCA 1 cut(s) 651
Mly113I GGCGCC 1 cut(s) 33
MlyI GAGTC 1 cut(s) 73
Mox20I TGGCCA 1 cut(s) 651
MscI TGGCCA 1 cut(s) 651
MseI TTAA 1 cut(s) 804
Msp20I TGGCCA 1 cut(s) 651
MspI CCGG 1 cut(s) 789
MspR9I CCNGG 2 cut(s) 374, 790
Mva1269I GAATGC 1 cut(s) 277
MvaI CCWGG 1 cut(s) 374
MwoI GCNNNNNNNGC 4 cut(s) 231, 390, 454, 620
NarI GGCGCC 1 cut(s) 33
NciI CCSGG 1 cut(s) 790
NdeII GATC 2 cut(s) 53, 235
NlaIII CATG 3 cut(s) 197, 229, 644
NlaIV GGNNCC 2 cut(s) 34, 63
NmuCI GTSAC 2 cut(s) 669, 719
PagI TCATGA 1 cut(s) 640
PceI AGGCCT 1 cut(s) 757
PctI GAATGC 1 cut(s) 277
PfeI GAWTC 6 cut(s) 362, 368, 578, 793, 799, 811
PflFI GACNNNGTC 1 cut(s) 487
PfoI TCCNGGA 1 cut(s) 788
PkrI GCNGC 4 cut(s) 450, 453, 456, 464
PleI GAGTC 1 cut(s) 73
PluTI GGCGCC 1 cut(s) 36
PpsI GAGTC 1 cut(s) 73
Ppu21I YACGTR 1 cut(s) 517
PsiI TTATAA 1 cut(s) 245
Psp6I CCWGG 1 cut(s) 372
PspGI CCWGG 1 cut(s) 372
PspN4I GGNNCC 2 cut(s) 34, 63
PsyI GACNNNGTC 1 cut(s) 487
RsaI GTAC 1 cut(s) 500
RsaNI GTAC 1 cut(s) 499
SaqAI TTAA 1 cut(s) 804
SatI GCNGC 4 cut(s) 449, 452, 455, 463
Sau3AI GATC 2 cut(s) 53, 235
SchI GAGTC 1 cut(s) 73
ScrFI CCNGG 2 cut(s) 374, 790
SduI GDGCHC 2 cut(s) 183, 625
SfoI GGCGCC 1 cut(s) 34
Sse9I AATT 1 cut(s) 564
SseBI AGGCCT 1 cut(s) 757
SsiI CCGC 3 cut(s) 391, 777, 831
SspDI GGCGCC 1 cut(s) 32
SspMI CTAG 2 cut(s) 408, 753
StuI AGGCCT 1 cut(s) 757
StyD4I CCNGG 2 cut(s) 372, 788
TaaI ACNGT 2 cut(s) 487, 669
TaiI ACGT 2 cut(s) 519, 630
TaqI TCGA 2 cut(s) 630, 818
TasI AATT 1 cut(s) 564
TfiI GAWTC 6 cut(s) 362, 368, 578, 793, 799, 811
Tru1I TTAA 1 cut(s) 804
Tru9I TTAA 1 cut(s) 804
TscAI CASTG 4 cut(s) 25, 492, 672, 733
TseFI GTSAC 2 cut(s) 669, 719
TseI GCWGC 4 cut(s) 448, 451, 454, 462
Tsp45I GTSAC 2 cut(s) 669, 719
TspDTI ATGAA 2 cut(s) 80, 657
TspGWI ACGGA 1 cut(s) 486
TspRI CASTG 4 cut(s) 25, 492, 672, 733
Tth111I GACNNNGTC 1 cut(s) 487
XcmI CCANNNNNNNNNTGG 1 cut(s) 644
XspI CTAG 2 cut(s) 408, 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.