RLG00000005725
MYB Family

Myb family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0013661
Physical Location & Seq
Reverse (-)
1213268 .. 1215980
2713 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005725

Sequence Viewer

Length: 918 bp
ATGAGTACTAGTAGTAGCTGTGGAAGAAATGGTGCTGTTAGGCCTTATATAAGATCCAAAGTGCCTCGTCTGAGGTGGACTCCTGAGCTTCATCACTGTTTTGTTCAAGCCATTGAGAGGCTTGGAGGCCATAAAAAGGCTACTCCAAAACTTGTTCTTCAGATTATGGATGTCAAAGGACTCACCATTTCTCATGTCAAAAGCCATCTCCAGATGTTTAGAAGCATGAGGGGTGACCTTAGTAGAGCACCTGCAGATGGGAGTTTCACGCAGCAAAGAAAGCCAAGTTTTGAAGAGCATAGTGATGGGTGTCTTGATCATGAAGTAAATGTTATGGGTGTGGTCTCGGCTTCAAAACTCATCCCGGGATCAAATCCTCAGGTCATCTACAGTGTTCCACGCCGGTCAAAACCCATCAGAGAATCAGATCCTCAGGCCATCTACGCTAATCCCAGCAGTTCAAAAAGAGCTAGAATCGAGACGACGAGCTGTTCAGTCTCAGAGCAGCAGCAGCAATGGAGCCAAACAACACATGAAACGGCACCGTACACTTTTGATGATTATGGCCGGGTGCTGGCAAGTGGGGTGTCTCTGCCACAGCAGCATCATTTTCTTTACAACTTCAACCCCTTCTTCAAATCTGCATTGCAAGAATCTGATTTCTTCAAGATTGATGAAAAGCATGAACTGAAAATGCATAAACAGGAGAGTAGAGGAAGAGCACACACTGAAGGTGGAGACTGTCAGTTATCGTTGTCTCTCTCTTTGCCTCATCCCTCTTCTCACATGAGCAATGCTTCTTCAAGTGAAGAGATGGGTGGTGCAGTCTCATCATTAAACTATAAAGACTGTTCTGCCTTTTCTTCGGCAAATCGTGGTGTTGATTTGAATCTTTCCATTGCTCTCTGTGGTAACTGA

Protein Analysis

306

Amino Acids

33.82

Weight (kDa)

8.93

Isoelectric Point (pI)

57.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 23 - 72 2.1e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013661)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g35980
malus_domestica MD13G1013200.v1.1 MD16G1010100.v1.1
prunus_persica Prupe.1G340500_v2.0.a1 Prupe.1G340500_v2.0.a1
pyrus_communis pycom13g01120 pycom16g00990
rosa_chinensis RchiOBHm_Chr4g0445611
rosa_laevigata RLG00000005725
rosa_multiflora Rmu_ssc0000107.1_g000003
rosa_roxburghii Rroxscaffold_5G00386090
rosa_rugosa Rorug04G0363000
rosa_samantha Rh4AG424400 Rh4AG424800 Rh4BG436600 Rh4CG451200 Rh4DG433100
rosa_wichuraiana Rw4G036390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 259
Acc36I ACCTGC 1 cut(s) 259
AccB1I GGYRCC 1 cut(s) 541
AclWI GGATC 3 cut(s) 48, 376, 422
AcoI YGGCCR 1 cut(s) 565
AcuI CTGAAG 2 cut(s) 143, 750
AfaI GTAC 2 cut(s) 7, 548
AfiI CCNNNNNNNGG 4 cut(s) 117, 136, 257, 574
AgsI TTSAA 9 cut(s) 107, 293, 354, 462, 625, 637, 667, 804, 889
AhlI ACTAGT 1 cut(s) 8
AluBI AGCT 4 cut(s) 18, 88, 470, 489
AluI AGCT 4 cut(s) 18, 88, 470, 489
Alw21I GWGCWC 2 cut(s) 250, 724
Alw26I GTCTC 7 cut(s) 349, 473, 502, 594, 732, 762, 832
AlwI GGATC 3 cut(s) 48, 376, 422
Ama87I CYCGRG 1 cut(s) 364
AoxI GGCC 4 cut(s) 41, 127, 435, 565
ApeKI GCWGC 5 cut(s) 271, 505, 508, 511, 601
AsuC2I CCSGG 3 cut(s) 365, 366, 569
AsuHPI GGTGA 2 cut(s) 175, 245
AvaI CYCGRG 1 cut(s) 364
AxyI CCTNAGG 2 cut(s) 378, 432
BanI GGYRCC 1 cut(s) 541
Bbv12I GWGCWC 2 cut(s) 250, 724
BbvI GCAGC 5 cut(s) 283, 517, 520, 523, 613
BccI CCATC 6 cut(s) 213, 251, 299, 422, 446, 808
BceAI ACGGC 1 cut(s) 555
BclI TGATCA 1 cut(s) 316
BcnI CCSGG 3 cut(s) 365, 366, 569
BcoDI GTCTC 7 cut(s) 349, 473, 502, 594, 732, 762, 832
BcuI ACTAGT 1 cut(s) 8
BfaI CTAG 2 cut(s) 9, 471
BfmI CTRYAG 2 cut(s) 252, 388
BfuAI ACCTGC 1 cut(s) 259
BisI GCNGC 5 cut(s) 272, 506, 509, 512, 602
BlsI GCNGC 5 cut(s) 273, 507, 510, 513, 603
BmcAI AGTACT 1 cut(s) 7
Bme1390I CCNGG 3 cut(s) 365, 366, 569
BmeT110I CYCGRG 1 cut(s) 364
BmiI GGNNCC 2 cut(s) 521, 543
BmrFI CCNGG 3 cut(s) 365, 366, 569
BmsI GCATC 1 cut(s) 613
BplI GAGNNNNNCTC 2 cut(s) 64, 96
BpmI CTGGAG 1 cut(s) 194
Bpu10I CCTNAGC 1 cut(s) 84
BpuMI CCSGG 3 cut(s) 365, 366, 569
BsaBI GATNNNNATC 1 cut(s) 888
BsaI GGTCTC 1 cut(s) 349
BsaJI CCNNGG 1 cut(s) 364
Bsc4I CCNNNNNNNGG 4 cut(s) 117, 136, 257, 574
Bse118I RCCGGY 1 cut(s) 402
Bse21I CCTNAGG 2 cut(s) 378, 432
Bse3DI GCAATG 4 cut(s) 521, 644, 799, 897
Bse8I GATNNNNATC 1 cut(s) 888
BseDI CCNNGG 1 cut(s) 364
BseGI GGATG 3 cut(s) 175, 360, 772
BseJI GATNNNNATC 1 cut(s) 888
BseLI CCNNNNNNNGG 4 cut(s) 117, 136, 257, 574
BseMI GCAATG 4 cut(s) 521, 644, 799, 897
BseMII CTCAG 5 cut(s) 62, 75, 392, 446, 513
BseXI GCAGC 5 cut(s) 283, 517, 520, 523, 613
BseYI CCCAGC 1 cut(s) 452
BsgI GTGCAG 1 cut(s) 843
BshFI GGCC 4 cut(s) 43, 129, 437, 567
BshNI GGYRCC 1 cut(s) 541
BsiHKAI GWGCWC 2 cut(s) 250, 724
BsiHKCI CYCGRG 1 cut(s) 364
BsiSI CCGG 3 cut(s) 365, 403, 568
BslI CCNNNNNNNGG 4 cut(s) 117, 136, 257, 574
BsmAI GTCTC 7 cut(s) 349, 473, 502, 594, 732, 762, 832
BsmBI CGTCTC 1 cut(s) 473
BsnI GGCC 4 cut(s) 43, 129, 437, 567
Bso31I GGTCTC 1 cut(s) 349
BsoBI CYCGRG 1 cut(s) 364
Bsp1286I GDGCHC 2 cut(s) 250, 724
Bsp143I GATC 4 cut(s) 53, 316, 368, 427
BspANI GGCC 4 cut(s) 43, 129, 437, 567
BspCNI CTCAG 5 cut(s) 63, 76, 391, 445, 512
BspHI TCATGA 1 cut(s) 319
BspLI GGNNCC 2 cut(s) 521, 543
BspMAI CTGCAG 1 cut(s) 256
BspMI ACCTGC 1 cut(s) 259
BspPI GGATC 3 cut(s) 48, 376, 422
BspQI GCTCTTC 2 cut(s) 288, 712
BspT107I GGYRCC 1 cut(s) 541
BspTNI GGTCTC 1 cut(s) 349
BsrDI GCAATG 4 cut(s) 521, 644, 799, 897
BsrFI RCCGGY 1 cut(s) 402
BssAI RCCGGY 1 cut(s) 402
BssECI CCNNGG 1 cut(s) 364
BssMI GATC 4 cut(s) 53, 316, 368, 427
Bst4CI ACNGT 5 cut(s) 98, 392, 546, 743, 851
Bst6I CTCTTC 4 cut(s) 288, 712, 784, 804
BstC8I GCNNGC 1 cut(s) 576
BstDEI CTNAG 6 cut(s) 71, 84, 239, 378, 432, 499
BstEII GGTNACC 1 cut(s) 233
BstF5I GGATG 3 cut(s) 175, 360, 772
BstKTI GATC 4 cut(s) 56, 319, 371, 430
BstMAI GTCTC 7 cut(s) 349, 473, 502, 594, 732, 762, 832
BstMBI GATC 4 cut(s) 53, 316, 368, 427
BstMWI GCNNNNNNNGC 4 cut(s) 280, 443, 511, 601
BstPI GGTNACC 1 cut(s) 233
BstSCI CCNGG 3 cut(s) 363, 364, 567
BstSFI CTRYAG 2 cut(s) 252, 388
BstV1I GCAGC 5 cut(s) 283, 517, 520, 523, 613
BstX2I RGATCY 2 cut(s) 53, 427
BstYI RGATCY 2 cut(s) 53, 427
Bsu36I CCTNAGG 2 cut(s) 378, 432
BsuRI GGCC 4 cut(s) 43, 129, 437, 567
BtsCI GGATG 3 cut(s) 175, 360, 772
BtsIMutI CAGTG 3 cut(s) 94, 397, 726
BveI ACCTGC 1 cut(s) 259
Cac8I GCNNGC 1 cut(s) 576
CciI TCATGA 1 cut(s) 319
Cfr10I RCCGGY 1 cut(s) 402
Cfr9I CCCGGG 1 cut(s) 364
Csp6I GTAC 2 cut(s) 6, 547
CviAII CATG 6 cut(s) 194, 226, 320, 533, 683, 787
CviQI GTAC 2 cut(s) 6, 547
DdeI CTNAG 6 cut(s) 71, 84, 239, 378, 432, 499
DpnI GATC 4 cut(s) 55, 318, 370, 429
DpnII GATC 4 cut(s) 53, 316, 368, 427
EaeI YGGCCR 1 cut(s) 565
Eam1104I CTCTTC 4 cut(s) 288, 712, 784, 804
EarI CTCTTC 4 cut(s) 288, 712, 784, 804
Eco147I AGGCCT 1 cut(s) 43
Eco31I GGTCTC 1 cut(s) 349
Eco57I CTGAAG 2 cut(s) 143, 750
Eco81I CCTNAGG 2 cut(s) 378, 432
Eco88I CYCGRG 1 cut(s) 364
Eco91I GGTNACC 1 cut(s) 233
EcoO65I GGTNACC 1 cut(s) 233
EcoT22I ATGCAT 1 cut(s) 699
Esp3I CGTCTC 1 cut(s) 473
FaeI CATG 6 cut(s) 197, 229, 323, 536, 686, 790
FatI CATG 6 cut(s) 193, 225, 319, 532, 682, 786
FbaI TGATCA 1 cut(s) 316
Fnu4HI GCNGC 5 cut(s) 272, 506, 509, 512, 602
FokI GGATG 3 cut(s) 182, 347, 759
Fsp4HI GCNGC 5 cut(s) 272, 506, 509, 512, 602
FspBI CTAG 2 cut(s) 9, 471
GluI GCNGC 5 cut(s) 272, 506, 509, 512, 602
GsaI CCCAGC 1 cut(s) 456
GsuI CTGGAG 1 cut(s) 194
HaeIII GGCC 4 cut(s) 43, 129, 437, 567
HapII CCGG 3 cut(s) 365, 403, 568
Hin1II CATG 6 cut(s) 197, 229, 323, 536, 686, 790
HinfI GANTC 6 cut(s) 79, 180, 422, 474, 653, 889
HpaII CCGG 3 cut(s) 365, 403, 568
HphI GGTGA 2 cut(s) 175, 245
Hpy166II GTNNAC 2 cut(s) 78, 549
Hpy188I TCNGA 6 cut(s) 72, 162, 419, 427, 502, 658
Hpy188III TCNNGA 6 cut(s) 83, 211, 314, 320, 478, 667
Hpy8I GTNNAC 2 cut(s) 78, 549
Hpy99I CGWCG 1 cut(s) 487
HpyAV CCTTC 2 cut(s) 640, 725
HpyCH4III ACNGT 5 cut(s) 98, 392, 546, 743, 851
HpyCH4V TGCA 5 cut(s) 254, 644, 649, 697, 824
HpyF10VI GCNNNNNNNGC 4 cut(s) 280, 443, 511, 601
HpyF3I CTNAG 6 cut(s) 71, 84, 239, 378, 432, 499
Hsp92II CATG 6 cut(s) 197, 229, 323, 536, 686, 790
Ksp22I TGATCA 1 cut(s) 316
Kzo9I GATC 4 cut(s) 53, 316, 368, 427
LguI GCTCTTC 2 cut(s) 288, 712
LmnI GCTCC 1 cut(s) 519
Lsp1109I GCAGC 5 cut(s) 283, 517, 520, 523, 613
LweI GCATC 1 cut(s) 613
MaeI CTAG 2 cut(s) 9, 471
MaeIII GTNAC 2 cut(s) 233, 911
MalI GATC 4 cut(s) 55, 318, 370, 429
MboI GATC 4 cut(s) 53, 316, 368, 427
MflI RGATCY 2 cut(s) 53, 427
MhlI GDGCHC 2 cut(s) 250, 724
MlyI GAGTC 2 cut(s) 73, 174
Mph1103I ATGCAT 1 cut(s) 699
MseI TTAA 1 cut(s) 836
MslI CAYNNNNRTG 1 cut(s) 303
MspI CCGG 3 cut(s) 365, 403, 568
MspR9I CCNGG 3 cut(s) 365, 366, 569
MwoI GCNNNNNNNGC 4 cut(s) 280, 443, 511, 601
NciI CCSGG 3 cut(s) 365, 366, 569
NdeII GATC 4 cut(s) 53, 316, 368, 427
NlaIII CATG 6 cut(s) 197, 229, 323, 536, 686, 790
NlaIV GGNNCC 2 cut(s) 521, 543
NmeAIII GCCGAG 1 cut(s) 326
NmuCI GTSAC 1 cut(s) 233
NsiI ATGCAT 1 cut(s) 699
PagI TCATGA 1 cut(s) 319
PaqCI CACCTGC 1 cut(s) 259
PceI AGGCCT 1 cut(s) 43
PciSI GCTCTTC 2 cut(s) 288, 712
PfeI GAWTC 4 cut(s) 422, 474, 653, 889
PkrI GCNGC 5 cut(s) 273, 507, 510, 513, 603
PleI GAGTC 2 cut(s) 73, 174
PpsI GAGTC 2 cut(s) 73, 174
PspEI GGTNACC 1 cut(s) 233
PspFI CCCAGC 1 cut(s) 452
PspN4I GGNNCC 2 cut(s) 521, 543
PstI CTGCAG 1 cut(s) 256
PsuI RGATCY 2 cut(s) 53, 427
RsaI GTAC 2 cut(s) 7, 548
RsaNI GTAC 2 cut(s) 6, 547
RseI CAYNNNNRTG 1 cut(s) 303
SapI GCTCTTC 2 cut(s) 288, 712
SaqAI TTAA 1 cut(s) 836
SatI GCNGC 5 cut(s) 272, 506, 509, 512, 602
Sau3AI GATC 4 cut(s) 53, 316, 368, 427
ScaI AGTACT 1 cut(s) 7
SchI GAGTC 2 cut(s) 73, 174
ScrFI CCNGG 3 cut(s) 365, 366, 569
SduI GDGCHC 2 cut(s) 250, 724
SetI ASST 9 cut(s) 20, 77, 90, 240, 253, 384, 472, 491, 736
SfaNI GCATC 1 cut(s) 613
SfcI CTRYAG 2 cut(s) 252, 388
SmaI CCCGGG 1 cut(s) 366
SmiMI CAYNNNNRTG 1 cut(s) 303
SpeI ACTAGT 1 cut(s) 8
SseBI AGGCCT 1 cut(s) 43
SspMI CTAG 2 cut(s) 9, 471
StuI AGGCCT 1 cut(s) 43
StyD4I CCNGG 3 cut(s) 363, 364, 567
TaaI ACNGT 5 cut(s) 98, 392, 546, 743, 851
TaqI TCGA 1 cut(s) 477
TatI WGTACW 1 cut(s) 5
TfiI GAWTC 4 cut(s) 422, 474, 653, 889
Tru1I TTAA 1 cut(s) 836
Tru9I TTAA 1 cut(s) 836
TscAI CASTG 3 cut(s) 101, 397, 733
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 5 cut(s) 271, 505, 508, 511, 601
Tsp45I GTSAC 1 cut(s) 233
TspDTI ATGAA 5 cut(s) 80, 336, 549, 690, 699
TspMI CCCGGG 1 cut(s) 364
TspRI CASTG 3 cut(s) 101, 397, 733
XmaI CCCGGG 1 cut(s) 364
XspI CTAG 2 cut(s) 9, 471
ZrmI AGTACT 1 cut(s) 7
Zsp2I ATGCAT 1 cut(s) 699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.